Non-Coding RNA Search

Ss1.1-Pig4-TMW8036O23.3

Sequence:


               
               ACGTGTTCCTGGTGCCGAACGTGTCACGCCCATTGCCATCCCAGTGGAAGTTGCTTCGCC
AGGAACTGTTGAAGTACCTCGAATGCTTCTTGCTGGCTGTCATTACTGGGTGTCAGATGT
CTGCCCCACCCAGTAGGACTCAAGCCATGTGGGAAGATTTTATAACCTGCTTGAAGGATC
AAGATCTGATAGCTAGTGCAGCACTCGAGGCCCAGTCTCAGTACCTCTTAACGAAGACTG
CTGTTTCTAGACCTTTGCTTTTGATTTTAGATGACAACTTTTATTATCAAAGTATGAGAT
ATGAAGTCTATCAGCTGGCTCGGAAATATTCGTTAGGCTTTTGCCAGCTCTTTTTCGATT
GTTCTCTCGAGACCTGCTTACAGAGGAATGGCCGGAGACCACAGCCACTGCCTGCCGAGA
CCATCCGCCTGATGGGAGGCAAGATAGAAAAGCCCAACCCTGAGAAAAATGCTTGGGAAC
ACAACAGCCTCACAATTCAGAGCCTGGCATGTGCTCCAGAGGCCAGCCTGAAGCTGACTG
ATTTATTGCTCACTGCTTTGGAAAATCCGATAAAATGCGTGGAGGATGATGTGGAACAAA
AGGAAACAGACAGAATCATCTGTTCAACCAGCGTTCTTCATCAGGCTGATCAGACACTCC
GAAGAATTGTCTCTCAGACAATGAAGGAAGCAAAAGATGAACAAGTGCTTCCTTACAACT
TGAAGCTTCTAGCAGAAGACCTTAACAAGCTCAAAGCAGAATTTTTGGAAGACTTAAGAC
AAGGAAACAAAAAATACCTGTGCTTTCAACAAACTGTTGACTTATCAGATGTTATTTCTT
TTTTTCATTTTAAGAAAGATAACATTGTACAGAAATATTTTTCAAAGCAGCATTAAAACT
TCTGAATTTCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACGTGTTCCTGGTGCCGAACGTGTCACGCCCATTGCCATCCCAGTGGAAGTTGCTTCGCC
AGGAACTGTTGAAGTACCTCGAATGCTTCTTGCTGGCTGTCATTACTGGGTGTCAGATGT
CTGCCCCACCCAGTAGGACTCAAGCCATGTGGGAAGATTTTATAACCTGCTTGAAGGATC
AAGATCTGATAGCTAGTGCAGCACTCGAGGCCCAGTCTCAGTACCTCTTAACGAAGACTG
CTGTTTCTAGACCTTTGCTTTTGATTTTAGATGACAACTTTTATTATCAAAGTATGAGAT
ATGAAGTCTATCAGCTGGCTCGGAAATATTCGTTAGGCTTTTGCCAGCTCTTTTTCGATT
GTTCTCTCGAGACCTGCTTACAGAGGAATGGCCGGAGACCACAGCCACTGCCTGCCGAGA
CCATCCGCCTGATGGGAGGCAAGATAGAAAAGCCCAACCCTGAGAAAAATGCTTGGGAAC
ACAACAGCCTCACAATTCAGAGCCTGGCATGTGCTCCAGAGGCCAGCCTGAAGCTGACTG
ATTTATTGCTCACTGCTTTGGAAAATCCGATAAAATGCGTGGAGGATGATGTGGAACAAA
AGGAAACAGACAGAATCATCTGTTCAACCAGCGTTCTTCATCAGGCTGATCAGACACTCC
GAAGAATTGTCTCTCAGACAATGAAGGAAGCAAAAGATGAACAAGTGCTTCCTTACAACT
TGAAGCTTCTAGCAGAAGACCTTAACAAGCTCAAAGCAGAATTTTTGGAAGACTTAAGAC
AAGGAAACAAAAAATACCTGTGCTTTCAACAAACTGTTGACTTATCAGATGTTATTTCTT
TTTTTCATTTTAAGAAAGATAACATTGTACAGAAATATTTTTCAAAGCAGCATTAAAACT
TCTGAATTTCCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61808591|ref|XP_588459.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61808591|ref|XP_588459.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               35-191, - strand, RNAz p=0.765557
               

               
               734-893, + strand, RNAz p=0.827589

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               35-191, - strand, RNAz p=0.765557
               

               
               734-893, + strand, RNAz p=0.827589

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AK127173, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AK127173, +

Aligned organism(s): 22 entry(ies)

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Aligned organism(s): 22 entry(ies)

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               35-327, gnl|bosTau2|chr26 (28001887-28001595)
               

               
               35-327, gnl|Hg17|chr10 (124732238-124732530)
               

               
               35-327, gnl|Mm7|chr7 (127728776-127729071)
               


               
               328-526, gnl|bosTau2|chr26 (28001139-28000941)
               

               
               328-526, gnl|Hg17|chr10 (124732778-124732976)
               

               
               328-526, gnl|Mm7|chr7 (127729306-127729504)
               


               
               695-912, gnl|bosTau2|chr26 (27991772-27991555)
               

               
               695-912, gnl|canFam2|chr28 (35547317-35547553)
               

               
               695-912, gnl|echTel1|scaffold_284527 (986-1188)
               

               
               695-912, gnl|fr1|chrUn (231209376-231209594)
               

               
               695-912, gnl|galGal2|chr6 (30498424-30498666)
               

               
               695-912, gnl|hg17|chr10 (124739636-124739874)
               

               
               695-912, gnl|Hg17|chr10 (124739678-124739895)
               

               
               695-912, gnl|loxAfr1|scaffold_17888 (10367-10130)
               

               
               695-912, gnl|mm7|chr7 (127743443-127743666)
               

               
               695-912, gnl|Mm7|chr7 (127743470-127743687)
               

               
               695-912, gnl|monDom2|scaffold_14 (36006649-36006411)
               

               
               695-912, gnl|oryCun1|scaffold_185220 (41027-40789)
               

               
               695-912, gnl|panTro1|chr8 (127043687-127043925)
               

               
               695-912, gnl|rheMac2|chr9 (122584607-122584843)
               

               
               695-912, gnl|rn3|chr1 (191116394-191116621)
               

               
               695-912, gnl|xenTro1|scaffold_97 (1765750-1765989)

Aligned organism(s): 22 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               35-327, gnl|bosTau2|chr26 (28001887-28001595)
               

               
               35-327, gnl|Hg17|chr10 (124732238-124732530)
               

               
               35-327, gnl|Mm7|chr7 (127728776-127729071)
               


               
               328-526, gnl|bosTau2|chr26 (28001139-28000941)
               

               
               328-526, gnl|Hg17|chr10 (124732778-124732976)
               

               
               328-526, gnl|Mm7|chr7 (127729306-127729504)
               


               
               695-912, gnl|bosTau2|chr26 (27991772-27991555)
               

               
               695-912, gnl|canFam2|chr28 (35547317-35547553)
               

               
               695-912, gnl|echTel1|scaffold_284527 (986-1188)
               

               
               695-912, gnl|fr1|chrUn (231209376-231209594)
               

               
               695-912, gnl|galGal2|chr6 (30498424-30498666)
               

               
               695-912, gnl|hg17|chr10 (124739636-124739874)
               

               
               695-912, gnl|Hg17|chr10 (124739678-124739895)
               

               
               695-912, gnl|loxAfr1|scaffold_17888 (10367-10130)
               

               
               695-912, gnl|mm7|chr7 (127743443-127743666)
               

               
               695-912, gnl|Mm7|chr7 (127743470-127743687)
               

               
               695-912, gnl|monDom2|scaffold_14 (36006649-36006411)
               

               
               695-912, gnl|oryCun1|scaffold_185220 (41027-40789)
               

               
               695-912, gnl|panTro1|chr8 (127043687-127043925)
               

               
               695-912, gnl|rheMac2|chr9 (122584607-122584843)
               

               
               695-912, gnl|rn3|chr1 (191116394-191116621)
               

               
               695-912, gnl|xenTro1|scaffold_97 (1765750-1765989)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               sin (0.349895)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               isp (0.150376)
               

               
               lyg (0.133103)
               

               
               eje (0.0988338)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sin (0.349895)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               isp (0.150376)
               

               
               lyg (0.133103)
               

               
               eje (0.0988338)

	35-191, - strand, RNAz p=0.765557
	734-893, + strand, RNAz p=0.827589

	35-327, gnl\|bosTau2\|chr26 (28001887-28001595)
	35-327, gnl\|Hg17\|chr10 (124732238-124732530)
	35-327, gnl\|Mm7\|chr7 (127728776-127729071)

	328-526, gnl\|bosTau2\|chr26 (28001139-28000941)
	328-526, gnl\|Hg17\|chr10 (124732778-124732976)
	328-526, gnl\|Mm7\|chr7 (127729306-127729504)

	695-912, gnl\|bosTau2\|chr26 (27991772-27991555)
	695-912, gnl\|canFam2\|chr28 (35547317-35547553)
	695-912, gnl\|echTel1\|scaffold_284527 (986-1188)
	695-912, gnl\|fr1\|chrUn (231209376-231209594)
	695-912, gnl\|galGal2\|chr6 (30498424-30498666)
	695-912, gnl\|hg17\|chr10 (124739636-124739874)
	695-912, gnl\|Hg17\|chr10 (124739678-124739895)
	695-912, gnl\|loxAfr1\|scaffold_17888 (10367-10130)
	695-912, gnl\|mm7\|chr7 (127743443-127743666)
	695-912, gnl\|Mm7\|chr7 (127743470-127743687)
	695-912, gnl\|monDom2\|scaffold_14 (36006649-36006411)
	695-912, gnl\|oryCun1\|scaffold_185220 (41027-40789)
	695-912, gnl\|panTro1\|chr8 (127043687-127043925)
	695-912, gnl\|rheMac2\|chr9 (122584607-122584843)
	695-912, gnl\|rn3\|chr1 (191116394-191116621)
	695-912, gnl\|xenTro1\|scaffold_97 (1765750-1765989)

	sin (0.349895)
	cut (0.169924)
	fhi (0.169578)
	mga (0.160205)
	isp (0.150376)
	lyg (0.133103)
	eje (0.0988338)