Non-Coding RNA Search

Ss1.1-Pig4-TMW8036O24.5

Sequence:


               
               GGTCACAGGACCGAGTGGAAAACCAGGAAAACCTGGAGACCATGGCAGACCAGGCCCATC
TGGATTGAAAGGAGAGAAAGGTGACAGGGGAGACGTCGCTTCCCACAACATGATGCGAGC
AGTTGCAAGACAAGTCTGTGAACAATTGATAAGTGGTCAGATGAGCAGATTCAATCAGAT
GCTGAATCAGATTCCAAACGATTACCACTCCAGTCGCAACCAGCCAGGCCCACCAGGTCC
CCCAGGGCCCCCTGGCAGTGTGGGAGCCAGAGGAGAACCAGGCCCTGGGGGACGGCCAGG
ATTCCCCGGCACTTGATATCGTCTGTAGTCCAGTGTGGACCAGTAGAGACAGATGCTGTG
ATATTCCCTCCAGGAGAGATGAAGAGGACCTCGAGGCTCTTCCAAACGCTTGCACGTGTA
AGGAGAATCCAGAACCGGTCCACCGGGGTCCACAGGTTCAAGAGGTCCTCCTGGTCCCCC
TGGTCGTCCTGGAAACTCAGGTATCCGAGGCCCCCCAGGTCCTCCTGGATACTGCGACTC
GTCTCAGTGTGCCAGCGTCCCATACAACGGACAGGGCTATCCAGGTTCCGGCTAACAAAT
TTTCTAAGTCGCCAGTGCTGCTTACAGTTTGAATACCTGAAAATCCTGTTTCTGAGATGT
TTGCGCACGCGCTTATTAGGAAATGAGTCTGTATGGAAATCTCACCACAGATATGGTTAA
TGAACCGGGTCGACATCAAAAAGGAGGGTGGAGACTCTTTATACTAACTTGAATGAGACA
AAAGCAGTGGTGTTAGTTTATAAGCCTGATGCATTTTCGTAATAATGTATAAAAATGCTA
TTTAAAAAAAAAAGTTCAAACACAGCTCATGAGGCGCCTCGGTCATGAAGGAGGCGCATA
AACTACTAACCGAGGAGATGATGCCATTTTGATAAAAACGATTAACCTGGTTAAAGAGAA
ATATCTTATGTAAATAATAAACTAATTATGGCTTGTAAATGATTTGTATGGACCCTGTCC
ACTAAAAGCACTTACCAATTCTACCATCAGCTTCTGCATCAAAGCCTGCTGCTTGCTCTC
TGCTGGAATAACACCAAATAGAATCTCCTTCTCTCTTGCTTCATTTGTCCACGTCAGGCC
ACATGTTATTATTATTATTACCTTTTGTACATGTACTCTCATTTGGGTTTTGTGATGGCA
ATTTTCAAACCAAAGTTTTATAGTCACTTTTTTCCTTCCTGTGTTGCTCTGGTCCCTGGT
GGTTGTACCCACCAGCTGTGTAACTCAGTCTGTGGGACAGCCAGCCACAGACAGTGTCAT
GTACTGTATATGACCTGGTGGTAGTTGATTTTCACCTCCAGAGTTCAGTTTCCAGGAGCC
AATATAACTTCCCCTCACCTCCTCCTCTTTCCACATTGCTTTTGGAACTGAGGAATTTGC
AGTGACCAAGAGTTACTTGGGAATTTGTGAAAACCCTTCCTAGGTTGGTTGACAGTTCTC
TTTGGCCCAGTCTCTGACCTTTCCCAGGTTATTTGTGCAATGATTATATTTACTGCTGCA
TCTTTGAAGGTTAAAAAAATGAGGGCCATTTAGTTATTGGATCACCAAATTCTCTCCGCA
AATGGAAGTAATCAGAGCTTTCTAATTTATGGGTTTATAGTTATGACAGTAAGATGGAGC
ACCATCACCTTGGGTGGCGATTTAGGTTTGCTGTGTGTGTTCCTTCCCAATCATGCTGTA
ACTGTAATGTTGAATCGGACAGAGCCCTACGTGCCCGAGGGCGGGGCCTACCTGCCTGAG
CGCGAGCCCTTCATCGTGCCGGTGGAGCCTGAGCGGACCGCGGAAGAGTACGAGGACTAC
GGCGCAGATGAGCCAGCCCACGAGCGCCCTCCACACGCGCGCTGGAGGCGCGCCCTGCCC
CGCGGCCCCTGGCAGTGAACCTGACCCCGCGCAGGACAACACGGAGGGGTGGGGGGAGGT
GTCGGATTCTCCTTTGTAGGTCCTGTTTCTTCACTTTCTGACTGTAGAGAACCTTGTTTT
TGCAGGAAGCCTAGCTCGCTGCATGCAGTCGGTAGAAATCTTTGCCTTTTCCCTTGAAAT
GCTTGCAAAATCCTTTGTTTACAAAAGCTGCAGGGAGAGAACGTGCCTTGTGCGTTTAGT
TAGCACAGCGGGCAGCCTCAGTGAAACTCTTAGGTTAAGCAGTAAGTCCTGGAGCCCAGA
ACTACTGTGTATGTTGAGAGGGCAGTTTTTGTCTTTTTTCCAATACTTATTTGCAATTCA
GTTACATCAGGATTCAAGCAATCCCTCTCCTAAAACCAAAGAGGAGGGGAAAGTCAACTC
CTTTGCAATTATTTATCTTCCTCTTTTATCTTCTGTAATACATTAGGGCATAGAGTGCTC
TTATACATCTCCTGTAACAGCCACAAACCTTAAGCCATGTAGCTGAAAGTATTGTATCAA
CTGGATACAGTTCCATATTGCCTTAAACCTCCTTGTTTTAGACACACTAACATTTATGCC
AAATCGCAGATTATTCTGCAGAGATGGAATTGCATGTTTGTGTTGTATATTTAGTATGAA
CTTTTTTTTTTAGAACATAATGTTTCTTAGTTATCAAAAGCAGTTGGAAAATGTTTGCAA
GACTATGAACATAGAATTGCTGCTTTTATATTTTAACTGCAGATTGTGAATTTCACTGCC
TTATATTATTTATTTCTGAAACAAAAGAGGCATTTTTCAATAAAACTACTGAAAATTGGA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTCACAGGACCGAGTGGAAAACCAGGAAAACCTGGAGACCATGGCAGACCAGGCCCATC
TGGATTGAAAGGAGAGAAAGGTGACAGGGGAGACGTCGCTTCCCACAACATGATGCGAGC
AGTTGCAAGACAAGTCTGTGAACAATTGATAAGTGGTCAGATGAGCAGATTCAATCAGAT
GCTGAATCAGATTCCAAACGATTACCACTCCAGTCGCAACCAGCCAGGCCCACCAGGTCC
CCCAGGGCCCCCTGGCAGTGTGGGAGCCAGAGGAGAACCAGGCCCTGGGGGACGGCCAGG
ATTCCCCGGCACTTGATATCGTCTGTAGTCCAGTGTGGACCAGTAGAGACAGATGCTGTG
ATATTCCCTCCAGGAGAGATGAAGAGGACCTCGAGGCTCTTCCAAACGCTTGCACGTGTA
AGGAGAATCCAGAACCGGTCCACCGGGGTCCACAGGTTCAAGAGGTCCTCCTGGTCCCCC
TGGTCGTCCTGGAAACTCAGGTATCCGAGGCCCCCCAGGTCCTCCTGGATACTGCGACTC
GTCTCAGTGTGCCAGCGTCCCATACAACGGACAGGGCTATCCAGGTTCCGGCTAACAAAT
TTTCTAAGTCGCCAGTGCTGCTTACAGTTTGAATACCTGAAAATCCTGTTTCTGAGATGT
TTGCGCACGCGCTTATTAGGAAATGAGTCTGTATGGAAATCTCACCACAGATATGGTTAA
TGAACCGGGTCGACATCAAAAAGGAGGGTGGAGACTCTTTATACTAACTTGAATGAGACA
AAAGCAGTGGTGTTAGTTTATAAGCCTGATGCATTTTCGTAATAATGTATAAAAATGCTA
TTTAAAAAAAAAAGTTCAAACACAGCTCATGAGGCGCCTCGGTCATGAAGGAGGCGCATA
AACTACTAACCGAGGAGATGATGCCATTTTGATAAAAACGATTAACCTGGTTAAAGAGAA
ATATCTTATGTAAATAATAAACTAATTATGGCTTGTAAATGATTTGTATGGACCCTGTCC
ACTAAAAGCACTTACCAATTCTACCATCAGCTTCTGCATCAAAGCCTGCTGCTTGCTCTC
TGCTGGAATAACACCAAATAGAATCTCCTTCTCTCTTGCTTCATTTGTCCACGTCAGGCC
ACATGTTATTATTATTATTACCTTTTGTACATGTACTCTCATTTGGGTTTTGTGATGGCA
ATTTTCAAACCAAAGTTTTATAGTCACTTTTTTCCTTCCTGTGTTGCTCTGGTCCCTGGT
GGTTGTACCCACCAGCTGTGTAACTCAGTCTGTGGGACAGCCAGCCACAGACAGTGTCAT
GTACTGTATATGACCTGGTGGTAGTTGATTTTCACCTCCAGAGTTCAGTTTCCAGGAGCC
AATATAACTTCCCCTCACCTCCTCCTCTTTCCACATTGCTTTTGGAACTGAGGAATTTGC
AGTGACCAAGAGTTACTTGGGAATTTGTGAAAACCCTTCCTAGGTTGGTTGACAGTTCTC
TTTGGCCCAGTCTCTGACCTTTCCCAGGTTATTTGTGCAATGATTATATTTACTGCTGCA
TCTTTGAAGGTTAAAAAAATGAGGGCCATTTAGTTATTGGATCACCAAATTCTCTCCGCA
AATGGAAGTAATCAGAGCTTTCTAATTTATGGGTTTATAGTTATGACAGTAAGATGGAGC
ACCATCACCTTGGGTGGCGATTTAGGTTTGCTGTGTGTGTTCCTTCCCAATCATGCTGTA
ACTGTAATGTTGAATCGGACAGAGCCCTACGTGCCCGAGGGCGGGGCCTACCTGCCTGAG
CGCGAGCCCTTCATCGTGCCGGTGGAGCCTGAGCGGACCGCGGAAGAGTACGAGGACTAC
GGCGCAGATGAGCCAGCCCACGAGCGCCCTCCACACGCGCGCTGGAGGCGCGCCCTGCCC
CGCGGCCCCTGGCAGTGAACCTGACCCCGCGCAGGACAACACGGAGGGGTGGGGGGAGGT
GTCGGATTCTCCTTTGTAGGTCCTGTTTCTTCACTTTCTGACTGTAGAGAACCTTGTTTT
TGCAGGAAGCCTAGCTCGCTGCATGCAGTCGGTAGAAATCTTTGCCTTTTCCCTTGAAAT
GCTTGCAAAATCCTTTGTTTACAAAAGCTGCAGGGAGAGAACGTGCCTTGTGCGTTTAGT
TAGCACAGCGGGCAGCCTCAGTGAAACTCTTAGGTTAAGCAGTAAGTCCTGGAGCCCAGA
ACTACTGTGTATGTTGAGAGGGCAGTTTTTGTCTTTTTTCCAATACTTATTTGCAATTCA
GTTACATCAGGATTCAAGCAATCCCTCTCCTAAAACCAAAGAGGAGGGGAAAGTCAACTC
CTTTGCAATTATTTATCTTCCTCTTTTATCTTCTGTAATACATTAGGGCATAGAGTGCTC
TTATACATCTCCTGTAACAGCCACAAACCTTAAGCCATGTAGCTGAAAGTATTGTATCAA
CTGGATACAGTTCCATATTGCCTTAAACCTCCTTGTTTTAGACACACTAACATTTATGCC
AAATCGCAGATTATTCTGCAGAGATGGAATTGCATGTTTGTGTTGTATATTTAGTATGAA
CTTTTTTTTTTAGAACATAATGTTTCTTAGTTATCAAAAGCAGTTGGAAAATGTTTGCAA
GACTATGAACATAGAATTGCTGCTTTTATATTTTAACTGCAGATTGTGAATTTCACTGCC
TTATATTATTTATTTCTGAAACAAAAGAGGCATTTTTCAATAAAACTACTGAAAATTGGA
AAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               COCA1_RAT

Coded protein: 1 entry(ies)

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Protein identifier


               
               COCA1_RAT

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               194-312, - strand, RNAz p=0.888146
               

               
               1200-2755, - strand, RNAz p=0.88114
               

               
               2244-2403, - strand, RNAz p=0.947363

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               194-312, - strand, RNAz p=0.888146
               

               
               1200-2755, - strand, RNAz p=0.88114
               

               
               2244-2403, - strand, RNAz p=0.947363

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               155-312, gnl|bosTau2|chr9 (8076151-8076308)
               

               
               155-312, gnl|Hg17|chr6 (75856735-75856578)
               

               
               155-312, gnl|Mm7|chr9 (79680966-79680809)
               


               
               582-2002, gnl|bosTau2|chr9 (8079304-8080683)
               

               
               582-2002, gnl|Hg17|chr6 (75852996-75851563)
               

               
               582-2002, gnl|Mm7|chr9 (79677566-79676160)
               


               
               2014-2760, gnl|bosTau2|chr9 (8080747-8081495)
               

               
               2014-2760, gnl|Hg17|chr6 (75851500-75850762)
               

               
               2014-2760, gnl|Mm7|chr9 (79676093-79675375)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               155-312, gnl|bosTau2|chr9 (8076151-8076308)
               

               
               155-312, gnl|Hg17|chr6 (75856735-75856578)
               

               
               155-312, gnl|Mm7|chr9 (79680966-79680809)
               


               
               582-2002, gnl|bosTau2|chr9 (8079304-8080683)
               

               
               582-2002, gnl|Hg17|chr6 (75852996-75851563)
               

               
               582-2002, gnl|Mm7|chr9 (79677566-79676160)
               


               
               2014-2760, gnl|bosTau2|chr9 (8080747-8081495)
               

               
               2014-2760, gnl|Hg17|chr6 (75851500-75850762)
               

               
               2014-2760, gnl|Mm7|chr9 (79676093-79675375)

Expressed library(ies): 33 entry(ies)

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Expressed library(ies): 33 entry(ies)

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               eru (2.04082)
               

               
               ski (1.02715)
               

               
               ese (1.01202)
               

               
               rec (0.865351)
               

               
               amn (0.835422)
               

               
               fat (0.737137)
               

               
               eep (0.735384)
               

               
               eye (0.682012)
               

               
               ova (0.516529)
               

               
               pro (0.512033)
               

               
               jca (0.45584)
               

               
               nca (0.410621)
               

               
               mga (0.32041)
               

               
               pla (0.267344)
               

               
               lyg (0.266205)
               

               
               nmm (0.265604)
               

               
               kid (0.259471)
               

               
               tra (0.246184)
               

               
               cly (0.241284)
               

               
               spc (0.226732)
               

               
               aor (0.195274)
               

               
               nlu (0.191681)
               

               
               cmu (0.186393)
               

               
               nep (0.183925)
               

               
               fty (0.17584)
               

               
               isp (0.150376)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               bla (0.124347)
               

               
               clu (0.119646)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

Expressed library(ies): 33 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eru (2.04082)
               

               
               ski (1.02715)
               

               
               ese (1.01202)
               

               
               rec (0.865351)
               

               
               amn (0.835422)
               

               
               fat (0.737137)
               

               
               eep (0.735384)
               

               
               eye (0.682012)
               

               
               ova (0.516529)
               

               
               pro (0.512033)
               

               
               jca (0.45584)
               

               
               nca (0.410621)
               

               
               mga (0.32041)
               

               
               pla (0.267344)
               

               
               lyg (0.266205)
               

               
               nmm (0.265604)
               

               
               kid (0.259471)
               

               
               tra (0.246184)
               

               
               cly (0.241284)
               

               
               spc (0.226732)
               

               
               aor (0.195274)
               

               
               nlu (0.191681)
               

               
               cmu (0.186393)
               

               
               nep (0.183925)
               

               
               fty (0.17584)
               

               
               isp (0.150376)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               bla (0.124347)
               

               
               clu (0.119646)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

	194-312, - strand, RNAz p=0.888146
	1200-2755, - strand, RNAz p=0.88114
	2244-2403, - strand, RNAz p=0.947363

	155-312, gnl\|bosTau2\|chr9 (8076151-8076308)
	155-312, gnl\|Hg17\|chr6 (75856735-75856578)
	155-312, gnl\|Mm7\|chr9 (79680966-79680809)

	582-2002, gnl\|bosTau2\|chr9 (8079304-8080683)
	582-2002, gnl\|Hg17\|chr6 (75852996-75851563)
	582-2002, gnl\|Mm7\|chr9 (79677566-79676160)

	2014-2760, gnl\|bosTau2\|chr9 (8080747-8081495)
	2014-2760, gnl\|Hg17\|chr6 (75851500-75850762)
	2014-2760, gnl\|Mm7\|chr9 (79676093-79675375)

	eru (2.04082)
	ski (1.02715)
	ese (1.01202)
	rec (0.865351)
	amn (0.835422)
	fat (0.737137)
	eep (0.735384)
	eye (0.682012)
	ova (0.516529)
	pro (0.512033)
	jca (0.45584)
	nca (0.410621)
	mga (0.32041)
	pla (0.267344)
	lyg (0.266205)
	nmm (0.265604)
	kid (0.259471)
	tra (0.246184)
	cly (0.241284)
	spc (0.226732)
	aor (0.195274)
	nlu (0.191681)
	cmu (0.186393)
	nep (0.183925)
	fty (0.17584)
	isp (0.150376)
	lin (0.145603)
	lnt (0.142308)
	csk (0.140746)
	bla (0.124347)
	clu (0.119646)
	eje (0.0988338)
	ldo (0.0970026)