Non-Coding RNA Search

Ss1.1-Pig4-TMW8036P06.5

Sequence:


               
               GGAATTTAGTGTCACCTGGTCCATATTCCCTCTATACCTCTACTGGCAGCTTCTGTTTAA
ACACTGTGAAGGGAAGGGAAACTTATAGAAGCATCTTATCTTTTACAAATTCCATCTTTT
TAATGGGTGTATACGAGTATGGTCCTCAGAGGCCCCTGAATTCTGTACAAAGAGCACAAA
TGTTGTTAGAGGGTGGGACTGGGGACTGGGGCTAGCAAATTGAAGTTAAAGCCAACATCA
TTTTATTTGAGGGGTACAGAGACCTACTGCAGGTGGCAGATGTTCCACCATCCGCATGCC
ACCCCTAACTACGCTGCTACTCTTCACAGCTTCGAAGTTACTGCACCTTTTAAAGTCATT
TATGGCAGTGATTCCTAAGCCTAATTGTGCCTCACTTGGTTACAAGGACTAGAATCCTAG
GGAGCTTATGAACATATGAGGCCCCATATCACACCTACTGAATCATCTCTAGAGACAGGA
CATGGAAACCTGTATTTTTTAAACTTCTTCAGATGATTCTGACACCTAATGAGATATAAG
ATCCTAAGGAGATTCAGGACCAACTGCAGTTTACTATAAATGTACCCTTAATCTGATGCT
GATGGTGTCTGGAGTTGAAGGAACCACACACCAAAAACCTGAACGTCTTCCCTTTATGCT
GAGAAAGATTCTAGCGTCTCAAATTGTAGTTTCAGCCCACCATAGATAGCTTCCAGCACA
GCTCCTACGGTGCAGGAGAGAACACCTGACCACAATTCAGAAGTTCTGGATTCTAGCTCC
CGTTCGGAAAAGGAGCAATTGTTGTGACATTGCTGTGCCATCTAGCCTCTCCAGACGTCA
ATGTCCGCTGTAGGTAATTAACATCTGCTATGTCTACCTAACAAGACAGTGATGCAAAAC
TCTGCCAAACAAGTTAATTATTCTTCCTTCTTTTTCCTCTGTACTAACCTACAAAATTTG
ATCTGCTCTAGCATTTTCCTATATGCACCTCTCTACCCCAGATGCCTGAGGAGTTGTTTC
GGAGCAAAGGTAGTGAGAAATTTCCCTTTCCTGCTACCTTCTAGCAAAGAAACAGAAGGT
TTCACTGTCACTGCTAACCATGATTACATGGAACTGATGGAACTATTAAAAGTGCAAGAA
AGAGTTCTGGCTATTAGGCAAGGCAGCTCTGCTGTTTATCCATGATTATGGAAACAAGGT
GTAAATAAAACTCAATAAAAAAGACACCTCGTTTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAATTTAGTGTCACCTGGTCCATATTCCCTCTATACCTCTACTGGCAGCTTCTGTTTAA
ACACTGTGAAGGGAAGGGAAACTTATAGAAGCATCTTATCTTTTACAAATTCCATCTTTT
TAATGGGTGTATACGAGTATGGTCCTCAGAGGCCCCTGAATTCTGTACAAAGAGCACAAA
TGTTGTTAGAGGGTGGGACTGGGGACTGGGGCTAGCAAATTGAAGTTAAAGCCAACATCA
TTTTATTTGAGGGGTACAGAGACCTACTGCAGGTGGCAGATGTTCCACCATCCGCATGCC
ACCCCTAACTACGCTGCTACTCTTCACAGCTTCGAAGTTACTGCACCTTTTAAAGTCATT
TATGGCAGTGATTCCTAAGCCTAATTGTGCCTCACTTGGTTACAAGGACTAGAATCCTAG
GGAGCTTATGAACATATGAGGCCCCATATCACACCTACTGAATCATCTCTAGAGACAGGA
CATGGAAACCTGTATTTTTTAAACTTCTTCAGATGATTCTGACACCTAATGAGATATAAG
ATCCTAAGGAGATTCAGGACCAACTGCAGTTTACTATAAATGTACCCTTAATCTGATGCT
GATGGTGTCTGGAGTTGAAGGAACCACACACCAAAAACCTGAACGTCTTCCCTTTATGCT
GAGAAAGATTCTAGCGTCTCAAATTGTAGTTTCAGCCCACCATAGATAGCTTCCAGCACA
GCTCCTACGGTGCAGGAGAGAACACCTGACCACAATTCAGAAGTTCTGGATTCTAGCTCC
CGTTCGGAAAAGGAGCAATTGTTGTGACATTGCTGTGCCATCTAGCCTCTCCAGACGTCA
ATGTCCGCTGTAGGTAATTAACATCTGCTATGTCTACCTAACAAGACAGTGATGCAAAAC
TCTGCCAAACAAGTTAATTATTCTTCCTTCTTTTTCCTCTGTACTAACCTACAAAATTTG
ATCTGCTCTAGCATTTTCCTATATGCACCTCTCTACCCCAGATGCCTGAGGAGTTGTTTC
GGAGCAAAGGTAGTGAGAAATTTCCCTTTCCTGCTACCTTCTAGCAAAGAAACAGAAGGT
TTCACTGTCACTGCTAACCATGATTACATGGAACTGATGGAACTATTAAAAGTGCAAGAA
AGAGTTCTGGCTATTAGGCAAGGCAGCTCTGCTGTTTATCCATGATTATGGAAACAAGGT
GTAAATAAAACTCAATAAAAAAGACACCTCGTTTTA

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               5-1221, gnl|bosTau2|chr3 (28535699-28536895)
               

               
               5-1221, gnl|Hg17|chr1 (111441290-111440120)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-1221, gnl|bosTau2|chr3 (28535699-28536895)
               

               
               5-1221, gnl|Hg17|chr1 (111441290-111440120)

Expressed library(ies): 18 entry(ies)

More info

Expressed library(ies): 18 entry(ies)

Help | Less info


               
               pro (1.02407)
               

               
               sin (0.349895)
               

               
               jej (0.296765)
               

               
               spl (0.286369)
               

               
               thg (0.253582)
               

               
               bla (0.248694)
               

               
               mgp (0.230681)
               

               
               cty (0.20816)
               

               
               col (0.195008)
               

               
               sto (0.179824)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               csk (0.140746)
               

               
               lyg (0.133103)
               

               
               ute (0.132784)
               

               
               ret (0.128733)
               

               
               pgl (0.118483)
               

               
               cbl (0.114797)

Expressed library(ies): 18 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (1.02407)
               

               
               sin (0.349895)
               

               
               jej (0.296765)
               

               
               spl (0.286369)
               

               
               thg (0.253582)
               

               
               bla (0.248694)
               

               
               mgp (0.230681)
               

               
               cty (0.20816)
               

               
               col (0.195008)
               

               
               sto (0.179824)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               csk (0.140746)
               

               
               lyg (0.133103)
               

               
               ute (0.132784)
               

               
               ret (0.128733)
               

               
               pgl (0.118483)
               

               
               cbl (0.114797)

	5-1221, gnl\|bosTau2\|chr3 (28535699-28536895)
	5-1221, gnl\|Hg17\|chr1 (111441290-111440120)

	pro (1.02407)
	sin (0.349895)
	jej (0.296765)
	spl (0.286369)
	thg (0.253582)
	bla (0.248694)
	mgp (0.230681)
	cty (0.20816)
	col (0.195008)
	sto (0.179824)
	ski (0.146735)
	lin (0.145603)
	csk (0.140746)
	lyg (0.133103)
	ute (0.132784)
	ret (0.128733)
	pgl (0.118483)
	cbl (0.114797)