Ss1.1-Pig4-TMW8036P17.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGGAGGGCGGGCGGTGTAGGCAACCGCGCGGCGGGAGTGCGGCCAGTGGAGCGGACGGGC AGAGCAGGAGCGCGGCCAGGAGACGGGGCAGCGGGAGCATCTGCACGATCCCCGCGCCCA GACTTCGCAGGAACCCACAACGCGCGCCGGGCCGAGCCCGCCCATGAAGCCGCCCGCGGC ACAGGGCAGCCCCGCGGCCGCCGCGGCCGCAGCCCCGGCCTTGGACTCGGCTGCCGCCGG GGACCTGACGGACGCGCTGTGCGAGTTTGACGCGGTGCTGGCCGACTTCGCGTCCCCGTT CCACGAGCGCCACTTCCACTACGAGGAGCACCTGGAGCGCATGAAACGGCGGAGCAGCGC CAGTGTCAGCGACAGCAGTGGCTTCAGCGACTCGGAGAGTGCAGATTCGCTTTATAGGAA CAGCTTCAGCTTCAGTGATGAGAAACTGAATTCTCCCACAGACAGGACTCCGGCGCTTCT CTCTCCCACGGTCCCTCCTCGGAAAGCCAAACTCGGAGACACGAAAGAGCTGGAAGACTT TATTGCTGATCTTGACAGAACATTAGCAAGTATGTGAAACAAGAAGGTCTGGGTCTTTTC ATCATAAAAGAGAAGCTTCCGAGAGCTCTGAGAACCTGATAAAATCAGCTACAGAATTCA CAGCTGGAAGGGACAGAGAGGCTGCACACCCACCACCAGGCCATTCTCAGGCCGAAAAAT GCCTTTGGGCTCCTCTCCGGGCAAGTTAGAAACTGTGTTGCCCTGCTTGCAGCGTATTAG AACAGACGACTCATGCTAATATTGTATTTTCTCTTAAAACGTAGCATTCTGTAATTTAAA ATGCTTTGATGAAAATATTTGTAATTAATTATATATAGTTGAAAACAGTAATATGCTTTT CCCATTATAATATATTTTTGTATGCAAATAAAATTTGAACTGGAAAAAAAAAAAAAAAAA GCTTTCTTTTCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGGAGGGCGGGCGGTGTAGGCAACCGCGCGGCGGGAGTGCGGCCAGTGGAGCGGACGGGC AGAGCAGGAGCGCGGCCAGGAGACGGGGCAGCGGGAGCATCTGCACGATCCCCGCGCCCA GACTTCGCAGGAACCCACAACGCGCGCCGGGCCGAGCCCGCCCATGAAGCCGCCCGCGGC ACAGGGCAGCCCCGCGGCCGCCGCGGCCGCAGCCCCGGCCTTGGACTCGGCTGCCGCCGG GGACCTGACGGACGCGCTGTGCGAGTTTGACGCGGTGCTGGCCGACTTCGCGTCCCCGTT CCACGAGCGCCACTTCCACTACGAGGAGCACCTGGAGCGCATGAAACGGCGGAGCAGCGC CAGTGTCAGCGACAGCAGTGGCTTCAGCGACTCGGAGAGTGCAGATTCGCTTTATAGGAA CAGCTTCAGCTTCAGTGATGAGAAACTGAATTCTCCCACAGACAGGACTCCGGCGCTTCT CTCTCCCACGGTCCCTCCTCGGAAAGCCAAACTCGGAGACACGAAAGAGCTGGAAGACTT TATTGCTGATCTTGACAGAACATTAGCAAGTATGTGAAACAAGAAGGTCTGGGTCTTTTC ATCATAAAAGAGAAGCTTCCGAGAGCTCTGAGAACCTGATAAAATCAGCTACAGAATTCA CAGCTGGAAGGGACAGAGAGGCTGCACACCCACCACCAGGCCATTCTCAGGCCGAAAAAT GCCTTTGGGCTCCTCTCCGGGCAAGTTAGAAACTGTGTTGCCCTGCTTGCAGCGTATTAG AACAGACGACTCATGCTAATATTGTATTTTCTCTTAAAACGTAGCATTCTGTAATTTAAA ATGCTTTGATGAAAATATTTGTAATTAATTATATATAGTTGAAAACAGTAATATGCTTTT CCCATTATAATATATTTTTGTATGCAAATAAAATTTGAACTGGAAAAAAAAAAAAAAAAA GCTTTCTTTTCA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
| 1-212, gnl|bosTau2|chr12 (4765432-4765658) | |
| 1-212, gnl|Hg17|chr13 (40929691-40929892) | |
| 399-506, gnl|bosTau2|chr12 (4775100-4775207) | |
| 399-506, gnl|canFam2|chr22 (12149303-12149123) | |
| 399-506, gnl|danRer3|chr7 (47795324-47795493) | |
| 399-506, gnl|dasNov1|scaffold_28771 (6229-6060) | |
| 399-506, gnl|echTel1|scaffold_293153 (2383-2215) | |
| 399-506, gnl|galGal2|chr1 (158138356-158138541) | |
| 399-506, gnl|hg17|chr13 (40938928-40939105) | |
| 399-506, gnl|Hg17|chr13 (40938959-40939066) | |
| 399-506, gnl|loxAfr1|scaffold_156462 (4213-4036) | |
| 399-506, gnl|mm7|chr14 (73972500-73972334) | |
| 399-506, gnl|Mm7|chr14 (73972467-73972360) | |
| 399-506, gnl|monDom2|scaffold_64 (3042479-3042641) | |
| 399-506, gnl|oryCun1|scaffold_205240 (40094-40270) | |
| 399-506, gnl|panTro1|chr14 (40613379-40613556) | |
| 399-506, gnl|rheMac2|chr17 (20448756-20448933) | |
| 562-944, gnl|bosTau2|chr12 (4779580-4779961) | |
| 562-944, gnl|canFam2|chr22 (12144932-12144430) | |
| 562-944, gnl|dasNov1|scaffold_28771 (2722-2233) | |
| 562-944, gnl|hg17|chr13 (40942581-40943068) | |
| 562-944, gnl|Hg17|chr13 (40942606-40943007) | |
| 562-944, gnl|loxAfr1|scaffold_5344 (83825-84321) | |
| 562-944, gnl|mm7|chr14 (73969844-73969389) | |
| 562-944, gnl|Mm7|chr14 (73969816-73969446) | |
| 562-944, gnl|monDom2|scaffold_64 (3046662-3047148) | |
| 562-944, gnl|oryCun1|scaffold_205240 (42981-43456) | |
| 562-944, gnl|panTro1|chr14 (40624861-40625348) | |
| 562-944, gnl|rheMac2|chr17 (20452384-20452869) | |
| 562-944, gnl|rn3|chr15 (60468037-60467564) |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-212, gnl|bosTau2|chr12 (4765432-4765658) | |
| 1-212, gnl|Hg17|chr13 (40929691-40929892) | |
| 399-506, gnl|bosTau2|chr12 (4775100-4775207) | |
| 399-506, gnl|canFam2|chr22 (12149303-12149123) | |
| 399-506, gnl|danRer3|chr7 (47795324-47795493) | |
| 399-506, gnl|dasNov1|scaffold_28771 (6229-6060) | |
| 399-506, gnl|echTel1|scaffold_293153 (2383-2215) | |
| 399-506, gnl|galGal2|chr1 (158138356-158138541) | |
| 399-506, gnl|hg17|chr13 (40938928-40939105) | |
| 399-506, gnl|Hg17|chr13 (40938959-40939066) | |
| 399-506, gnl|loxAfr1|scaffold_156462 (4213-4036) | |
| 399-506, gnl|mm7|chr14 (73972500-73972334) | |
| 399-506, gnl|Mm7|chr14 (73972467-73972360) | |
| 399-506, gnl|monDom2|scaffold_64 (3042479-3042641) | |
| 399-506, gnl|oryCun1|scaffold_205240 (40094-40270) | |
| 399-506, gnl|panTro1|chr14 (40613379-40613556) | |
| 399-506, gnl|rheMac2|chr17 (20448756-20448933) | |
| 562-944, gnl|bosTau2|chr12 (4779580-4779961) | |
| 562-944, gnl|canFam2|chr22 (12144932-12144430) | |
| 562-944, gnl|dasNov1|scaffold_28771 (2722-2233) | |
| 562-944, gnl|hg17|chr13 (40942581-40943068) | |
| 562-944, gnl|Hg17|chr13 (40942606-40943007) | |
| 562-944, gnl|loxAfr1|scaffold_5344 (83825-84321) | |
| 562-944, gnl|mm7|chr14 (73969844-73969389) | |
| 562-944, gnl|Mm7|chr14 (73969816-73969446) | |
| 562-944, gnl|monDom2|scaffold_64 (3046662-3047148) | |
| 562-944, gnl|oryCun1|scaffold_205240 (42981-43456) | |
| 562-944, gnl|panTro1|chr14 (40624861-40625348) | |
| 562-944, gnl|rheMac2|chr17 (20452384-20452869) | |
| 562-944, gnl|rn3|chr15 (60468037-60467564) |
| Expressed library(ies): 32 entry(ies) | More info |
| Expressed library(ies): 32 entry(ies) | Help | Less info |
| fty (1.05504) | |
| che (0.954198) | |
| elu (0.770713) | |
| nlu (0.766724) | |
| thg (0.633955) | |
| fat (0.58971) | |
| cki (0.495704) | |
| med (0.465008) | |
| jca (0.34188) | |
| fhi (0.339155) | |
| sme (0.305437) | |
| cte (0.29274) | |
| csk (0.281492) | |
| cst (0.280073) | |
| sug (0.254582) | |
| spc (0.226732) | |
| hea (0.204499) | |
| sto (0.179824) | |
| rec (0.17307) | |
| cje (0.165235) | |
| nco (0.161734) | |
| lun (0.150489) | |
| liv (0.146284) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| ute (0.132784) | |
| cov (0.132153) | |
| eep (0.122564) | |
| pgl (0.118483) | |
| nbm (0.0993246) |
| Expressed library(ies): 32 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fty (1.05504) | |
| che (0.954198) | |
| elu (0.770713) | |
| nlu (0.766724) | |
| thg (0.633955) | |
| fat (0.58971) | |
| cki (0.495704) | |
| med (0.465008) | |
| jca (0.34188) | |
| fhi (0.339155) | |
| sme (0.305437) | |
| cte (0.29274) | |
| csk (0.281492) | |
| cst (0.280073) | |
| sug (0.254582) | |
| spc (0.226732) | |
| hea (0.204499) | |
| sto (0.179824) | |
| rec (0.17307) | |
| cje (0.165235) | |
| nco (0.161734) | |
| lun (0.150489) | |
| liv (0.146284) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| ute (0.132784) | |
| cov (0.132153) | |
| eep (0.122564) | |
| pgl (0.118483) | |
| nbm (0.0993246) |