Ss1.1-Pig4-TMW8037A10.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGACCTCGAGGCCTGTGGCCGGCGGACCCCCAGCGCTGCTGGAGAGACCCCGGATGAGTC CGAGGTCCTGGGTAGCTAGGAGAGAGAGGCCGGAGGAGACCTGGGCCGCAGGGGTTAGCC GCAGAGGGTGGCGGAGCCAGCCCTGCACGCGCCGGGAAAAGGGAGGGAGAGAGAGAGAGT TAAGGGAGGGAGCGCGGAGTAAGTGAGCTTGGGTCCGACTCAGGGAGGGGACTGGTGGGC CAGGCCCCCAAGACGGCGTTACACCCGGTCTGAAGAAGACAGGCGGACACATGGCCTCGC CATTCCTGCCTTCGGGGGCTACCACGGGCGACAGCGGCGGAGAGCTGAGCTCGGGGGACG ACTCCGGGGATGCGGAATCCCTCCAGAGCCCCGAGACCGAGGCGTCCAGGAGCCTGACCG AGCTGTTTGAGAAGGCGGCCGCGCACCTCCAAGGCCTGGTTCAGGTGGCCAGCAGGGAGC AGCTCTTGTACCTGTATGCCAGGTACAAGCAGGTCAAAGTTGGAAATTGCAATACTCCTA AACCAAGCTTCTTTGACTTCGAAGGAAAGCAAAAATGGGAAGCATGGAAAGCACTTGGTG ATTCAAGCCCCAGCCAAGCAATGCAGGAGTATATCGCCGTAGTTAAAAAATTAGATCCAG ATTGGAATCCTCAGTTACCAGAGAAGAAAGGAAAAGAAACGAATACTGGTTTTGGCGGGC CCGTTGTTAGTTCTCTGTATCACGAGGAAATCATCAGGGAAGAAGACAAAAACATATTTG ATTACTGCAGGGAAAACAACATTGACCATATAACCAAAGTCATCAAATCGAAAAATGTGG ATGTGAATATGAAAGATGAAGAGGGCAGAGCTCTACTCCATTGGGCTTGTGATCGAGGAC ATAAGGATCTAGTCACAGTCTTGCTGCAATATAGAGCTGATATTAACTCTCAGGACAATG AAGGTCAAACAGCTCTACATTATGCCGCCGCCTGTGAGTTTCTGGACATCGTGGAGCTGC TGCTCCAGGCCGGCGCAGATGCCACCCTCCGAGACCAGGACGGCTGCCTGCCCCAGGAGG TGACAGGGTGCAAAGCGGTCGCTTTGGTGTTACAGCAGCACATGGCTGGCATGGCTTAAT CAAAAGACTGGAAAAACCACAGTCTGTTAACAGCGCAGAGCTTCAGTGGTGCAAGAAAAC TGCAAAAATAATGCTGCTTCTGCCACCCACCTTTGGTATACATTGGCTAATAAAAATCAG TTGCGAGGAACT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGACCTCGAGGCCTGTGGCCGGCGGACCCCCAGCGCTGCTGGAGAGACCCCGGATGAGTC CGAGGTCCTGGGTAGCTAGGAGAGAGAGGCCGGAGGAGACCTGGGCCGCAGGGGTTAGCC GCAGAGGGTGGCGGAGCCAGCCCTGCACGCGCCGGGAAAAGGGAGGGAGAGAGAGAGAGT TAAGGGAGGGAGCGCGGAGTAAGTGAGCTTGGGTCCGACTCAGGGAGGGGACTGGTGGGC CAGGCCCCCAAGACGGCGTTACACCCGGTCTGAAGAAGACAGGCGGACACATGGCCTCGC CATTCCTGCCTTCGGGGGCTACCACGGGCGACAGCGGCGGAGAGCTGAGCTCGGGGGACG ACTCCGGGGATGCGGAATCCCTCCAGAGCCCCGAGACCGAGGCGTCCAGGAGCCTGACCG AGCTGTTTGAGAAGGCGGCCGCGCACCTCCAAGGCCTGGTTCAGGTGGCCAGCAGGGAGC AGCTCTTGTACCTGTATGCCAGGTACAAGCAGGTCAAAGTTGGAAATTGCAATACTCCTA AACCAAGCTTCTTTGACTTCGAAGGAAAGCAAAAATGGGAAGCATGGAAAGCACTTGGTG ATTCAAGCCCCAGCCAAGCAATGCAGGAGTATATCGCCGTAGTTAAAAAATTAGATCCAG ATTGGAATCCTCAGTTACCAGAGAAGAAAGGAAAAGAAACGAATACTGGTTTTGGCGGGC CCGTTGTTAGTTCTCTGTATCACGAGGAAATCATCAGGGAAGAAGACAAAAACATATTTG ATTACTGCAGGGAAAACAACATTGACCATATAACCAAAGTCATCAAATCGAAAAATGTGG ATGTGAATATGAAAGATGAAGAGGGCAGAGCTCTACTCCATTGGGCTTGTGATCGAGGAC ATAAGGATCTAGTCACAGTCTTGCTGCAATATAGAGCTGATATTAACTCTCAGGACAATG AAGGTCAAACAGCTCTACATTATGCCGCCGCCTGTGAGTTTCTGGACATCGTGGAGCTGC TGCTCCAGGCCGGCGCAGATGCCACCCTCCGAGACCAGGACGGCTGCCTGCCCCAGGAGG TGACAGGGTGCAAAGCGGTCGCTTTGGTGTTACAGCAGCACATGGCTGGCATGGCTTAAT CAAAAGACTGGAAAAACCACAGTCTGTTAACAGCGCAGAGCTTCAGTGGTGCAAGAAAAC TGCAAAAATAATGCTGCTTCTGCCACCCACCTTTGGTATACATTGGCTAATAAAAATCAG TTGCGAGGAACT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 403-520, + strand, RNAz p=0.962946 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 403-520, + strand, RNAz p=0.962946 |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 25-520, gnl|bosTau2|chr16 (42291170-42290678) | |
| 25-520, gnl|Hg17|chr1 (177203359-177202830) | |
| 25-520, gnl|Mm7|chr1 (155520308-155520755) | |
| 577-677, gnl|bosTau2|chr16 (42280377-42280277) | |
| 577-677, gnl|canFam2|chr7 (16993597-16993836) | |
| 577-677, gnl|echTel1|scaffold_267013 (2904-2669) | |
| 577-677, gnl|hg17|chr1 (177193052-177193285) | |
| 577-677, gnl|Hg17|chr1 (177193158-177193058) | |
| 577-677, gnl|loxAfr1|scaffold_1169 (14046-14280) | |
| 577-677, gnl|mm7|chr1 (155529583-155529282) | |
| 577-677, gnl|Mm7|chr1 (155529475-155529575) | |
| 577-677, gnl|monDom2|scaffold_16 (33427848-33428071) | |
| 577-677, gnl|oryCun1|scaffold_106179 (3984-4228) | |
| 577-677, gnl|panTro1|chr1 (159563700-159563933) | |
| 577-677, gnl|rheMac2|chr1 (190243652-190243415) | |
| 577-677, gnl|rn3|chr13 (70543205-70542926) | |
| 753-864, gnl|bosTau2|chr16 (42150872-42150761) | |
| 753-864, gnl|canFam2|chr7 (16907613-16907787) | |
| 753-864, gnl|danRer3|chrNA (171821112-171821256) | |
| 753-864, gnl|dasNov1|scaffold_111861 (4064-3877) | |
| 753-864, gnl|echTel1|scaffold_44478 (35-208) | |
| 753-864, gnl|fr1|chrUn (101023187-101023007) | |
| 753-864, gnl|galGal2|chr8 (5957500-5957342) | |
| 753-864, gnl|hg17|chr1 (177114149-177114324) | |
| 753-864, gnl|Hg17|chr1 (177114266-177114157) | |
| 753-864, gnl|loxAfr1|scaffold_28194 (7413-7233) | |
| 753-864, gnl|mm7|chr1 (155577874-155577689) | |
| 753-864, gnl|Mm7|chr1 (155577753-155577864) | |
| 753-864, gnl|monDom2|scaffold_16 (33350047-33350226) | |
| 753-864, gnl|oryCun1|scaffold_170971 (5699-5877) | |
| 753-864, gnl|panTro1|chr1 (159483615-159483790) | |
| 753-864, gnl|rheMac2|chr1 (190324994-190324818) | |
| 753-864, gnl|rn3|chr13 (70592698-70592513) | |
| 753-864, gnl|tetNig1|chr1 (11244084-11244215) | |
| 984-1272, gnl|bosTau2|chr16 (42041166-42040881) | |
| 984-1272, gnl|Hg17|chr1 (176989310-176989026) | |
| 984-1272, gnl|Mm7|chr1 (155648839-155649120) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 25-520, gnl|bosTau2|chr16 (42291170-42290678) | |
| 25-520, gnl|Hg17|chr1 (177203359-177202830) | |
| 25-520, gnl|Mm7|chr1 (155520308-155520755) | |
| 577-677, gnl|bosTau2|chr16 (42280377-42280277) | |
| 577-677, gnl|canFam2|chr7 (16993597-16993836) | |
| 577-677, gnl|echTel1|scaffold_267013 (2904-2669) | |
| 577-677, gnl|hg17|chr1 (177193052-177193285) | |
| 577-677, gnl|Hg17|chr1 (177193158-177193058) | |
| 577-677, gnl|loxAfr1|scaffold_1169 (14046-14280) | |
| 577-677, gnl|mm7|chr1 (155529583-155529282) | |
| 577-677, gnl|Mm7|chr1 (155529475-155529575) | |
| 577-677, gnl|monDom2|scaffold_16 (33427848-33428071) | |
| 577-677, gnl|oryCun1|scaffold_106179 (3984-4228) | |
| 577-677, gnl|panTro1|chr1 (159563700-159563933) | |
| 577-677, gnl|rheMac2|chr1 (190243652-190243415) | |
| 577-677, gnl|rn3|chr13 (70543205-70542926) | |
| 753-864, gnl|bosTau2|chr16 (42150872-42150761) | |
| 753-864, gnl|canFam2|chr7 (16907613-16907787) | |
| 753-864, gnl|danRer3|chrNA (171821112-171821256) | |
| 753-864, gnl|dasNov1|scaffold_111861 (4064-3877) | |
| 753-864, gnl|echTel1|scaffold_44478 (35-208) | |
| 753-864, gnl|fr1|chrUn (101023187-101023007) | |
| 753-864, gnl|galGal2|chr8 (5957500-5957342) | |
| 753-864, gnl|hg17|chr1 (177114149-177114324) | |
| 753-864, gnl|Hg17|chr1 (177114266-177114157) | |
| 753-864, gnl|loxAfr1|scaffold_28194 (7413-7233) | |
| 753-864, gnl|mm7|chr1 (155577874-155577689) | |
| 753-864, gnl|Mm7|chr1 (155577753-155577864) | |
| 753-864, gnl|monDom2|scaffold_16 (33350047-33350226) | |
| 753-864, gnl|oryCun1|scaffold_170971 (5699-5877) | |
| 753-864, gnl|panTro1|chr1 (159483615-159483790) | |
| 753-864, gnl|rheMac2|chr1 (190324994-190324818) | |
| 753-864, gnl|rn3|chr13 (70592698-70592513) | |
| 753-864, gnl|tetNig1|chr1 (11244084-11244215) | |
| 984-1272, gnl|bosTau2|chr16 (42041166-42040881) | |
| 984-1272, gnl|Hg17|chr1 (176989310-176989026) | |
| 984-1272, gnl|Mm7|chr1 (155648839-155649120) |
| Expressed library(ies): 17 entry(ies) | More info |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
| jca (0.34188) | |
| tes (0.207814) | |
| fli (0.202881) | |
| fty (0.17584) | |
| eye (0.170503) | |
| cje (0.165235) | |
| csp (0.161186) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| nca (0.136874) | |
| cov (0.132153) | |
| ese (0.126502) | |
| bla (0.124347) | |
| eru (0.120048) | |
| med (0.116252) | |
| cty (0.10408) | |
| nbm (0.0993246) |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| jca (0.34188) | |
| tes (0.207814) | |
| fli (0.202881) | |
| fty (0.17584) | |
| eye (0.170503) | |
| cje (0.165235) | |
| csp (0.161186) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| nca (0.136874) | |
| cov (0.132153) | |
| ese (0.126502) | |
| bla (0.124347) | |
| eru (0.120048) | |
| med (0.116252) | |
| cty (0.10408) | |
| nbm (0.0993246) |