Non-Coding RNA Search

Ss1.1-Pig4-TMW8037A20.5

Sequence:


               
               GTACCTCTACAAAAACAGTATACACTTCTCAAATACTGTCTTGAGAATCCCCCAAGTAGA
ATCATGTGCAACTCGGCAAGAGTTTTTGCTCAAAACATTACTGACTGAAGCAAATTTCCT
TTCTGTTTCCTCTTGCTACTAAGGACCAGCAGGGAGAAATGTCTTCTCCCCAGCAGTGAA
CACTGTTATGCAATTTACACTTGATGCTCAGGCCTGCTGATGCTGAGGCTTACCTGTAAT
CACCACCTCCAAAGGGAATGAATTCTTCAGTTCATGTAATAGTATGCTAATGAGTGTAAA
ATCAATGGAGGCATTTTATTAATAAAATCTTGGTTCCTTTATAAAAACTGTAAATCATTA
TCCTCATTCTATAAAGCCACTATTACTACTACTCTCAAATTGCACTTTCTGGTAAAAAAA
ATTAACATTTTTAAGAAAAAAAAGATACAAATTTCAGTGGTTGAGGTTTTTTTGTTATGT
TCATAGACCATTTTTTTTCAATGTATTTTGCAGGAAAATCTTTGAATAAGACTTTAACCA
CAACCAAAACAAATAACCTTCTTCTCCCTCCCTCCTACTACAAAAATGTTTGGCAACTTC
TGTGTTTACATTTAAAGATCATTTGCACCTTTACAAGGAAAAAAACAAGTATTTGGTAAA
CAGTTGTTTACATGTATCATTTATGCTTTTTTCTAGCATGTATAACTTTTATAAATAAAG
GTAGTACTTACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTACCTCTACAAAAACAGTATACACTTCTCAAATACTGTCTTGAGAATCCCCCAAGTAGA
ATCATGTGCAACTCGGCAAGAGTTTTTGCTCAAAACATTACTGACTGAAGCAAATTTCCT
TTCTGTTTCCTCTTGCTACTAAGGACCAGCAGGGAGAAATGTCTTCTCCCCAGCAGTGAA
CACTGTTATGCAATTTACACTTGATGCTCAGGCCTGCTGATGCTGAGGCTTACCTGTAAT
CACCACCTCCAAAGGGAATGAATTCTTCAGTTCATGTAATAGTATGCTAATGAGTGTAAA
ATCAATGGAGGCATTTTATTAATAAAATCTTGGTTCCTTTATAAAAACTGTAAATCATTA
TCCTCATTCTATAAAGCCACTATTACTACTACTCTCAAATTGCACTTTCTGGTAAAAAAA
ATTAACATTTTTAAGAAAAAAAAGATACAAATTTCAGTGGTTGAGGTTTTTTTGTTATGT
TCATAGACCATTTTTTTTCAATGTATTTTGCAGGAAAATCTTTGAATAAGACTTTAACCA
CAACCAAAACAAATAACCTTCTTCTCCCTCCCTCCTACTACAAAAATGTTTGGCAACTTC
TGTGTTTACATTTAAAGATCATTTGCACCTTTACAAGGAAAAAAACAAGTATTTGGTAAA
CAGTTGTTTACATGTATCATTTATGCTTTTTTCTAGCATGTATAACTTTTATAAATAAAG
GTAGTACTTACC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               444-550, - strand, RNAz p=0.886661

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               444-550, - strand, RNAz p=0.886661

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               533-630, + strand, RNAmicro p=0.999099

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               533-630, + strand, RNAmicro p=0.999099

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-732, gnl|bosTau2|chr16 (41813282-41814009)
               

               
               1-732, gnl|Hg17|chr1 (170486756-170487477)
               

               
               1-732, gnl|Mm7|chr1 (161051547-161050768)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-732, gnl|bosTau2|chr16 (41813282-41814009)
               

               
               1-732, gnl|Hg17|chr1 (170486756-170487477)
               

               
               1-732, gnl|Mm7|chr1 (161051547-161050768)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               fce (0.271592)
               

               
               fbs (0.175346)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               bla (0.124347)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               fbs (0.175346)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               bla (0.124347)

	1-732, gnl\|bosTau2\|chr16 (41813282-41814009)
	1-732, gnl\|Hg17\|chr1 (170486756-170487477)
	1-732, gnl\|Mm7\|chr1 (161051547-161050768)

	fce (0.271592)
	fbs (0.175346)
	ski (0.146735)
	liv (0.146284)
	kid (0.129735)
	ret (0.128733)
	sug (0.127291)
	bla (0.124347)