Ss1.1-Pig4-TMW8037A22.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCCATTTGAGTAGTTGAACCTTTGCTTCTCACTCATGGAAAAACAGGATGCATTTTTTGC AGGATCTAACACAATATGCTTAAAATTAGTATTGGACAACCATCAATATGATACATAGTA TCTGGAATAAACAAATTTTCTCCAACAAATTTTGCGCTCTGCTCTTCAAGGATTCCTTGA TATGTAGGAGGTACACCAGGACCAGTTTTTCCCTTGTGGTGGCGTTAAAAGCTGATTGTC ATTTGCACCATCGCCTGAAAATCTGTGGCAGCTAGTAGCGTGATCAACCATATGTTCTAA TGTCTTTTTGCAGATTTAAAGGTTTTACTGTAGCGTCAATATCCGCATGTGTGTGAACTA TCTGAATTCTGTGTAATTAAATCGATATGTGATGGTGATTAGCACTCACTTAAAATCCAG CGAAACAATTATTTCCCTCTTAACTGGAAATCATATTTGTGAGGTATAATACCCCTTATC AACAGTGTATTCATGATTCAAATTTGTATTTTGTGTATCTGGTGATAAATTTTACATAGC GTTTGATACTTAATATAAATCCATTTGATTTTAATATAGTGGGGTGTGTGGGGGGGTGTG TGTGTCTGTGTGTGTCTGTGTGTGTGGTATGTGCACACTATAGTCTCCTGAGCCTTGGGA AACTGATTCTACAAATATCATATATAGACCTAAATGTATAAGGCTTATTTTTTTCTGCAA AGCGATACATTTCCTTTACTTATTAAATCACTGGCTTTTGGTGTTATGTAGAGATATTTG TAGACTGATTTTGGAAGAGAAGTAAAAATTGTGAAAATTACAGCTTAATAAATGTTTATT TGTTGTATAGACCCTAAATATATTTCATTACTTCCAAAAAGCAAAAAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCCATTTGAGTAGTTGAACCTTTGCTTCTCACTCATGGAAAAACAGGATGCATTTTTTGC AGGATCTAACACAATATGCTTAAAATTAGTATTGGACAACCATCAATATGATACATAGTA TCTGGAATAAACAAATTTTCTCCAACAAATTTTGCGCTCTGCTCTTCAAGGATTCCTTGA TATGTAGGAGGTACACCAGGACCAGTTTTTCCCTTGTGGTGGCGTTAAAAGCTGATTGTC ATTTGCACCATCGCCTGAAAATCTGTGGCAGCTAGTAGCGTGATCAACCATATGTTCTAA TGTCTTTTTGCAGATTTAAAGGTTTTACTGTAGCGTCAATATCCGCATGTGTGTGAACTA TCTGAATTCTGTGTAATTAAATCGATATGTGATGGTGATTAGCACTCACTTAAAATCCAG CGAAACAATTATTTCCCTCTTAACTGGAAATCATATTTGTGAGGTATAATACCCCTTATC AACAGTGTATTCATGATTCAAATTTGTATTTTGTGTATCTGGTGATAAATTTTACATAGC GTTTGATACTTAATATAAATCCATTTGATTTTAATATAGTGGGGTGTGTGGGGGGGTGTG TGTGTCTGTGTGTGTCTGTGTGTGTGGTATGTGCACACTATAGTCTCCTGAGCCTTGGGA AACTGATTCTACAAATATCATATATAGACCTAAATGTATAAGGCTTATTTTTTTCTGCAA AGCGATACATTTCCTTTACTTATTAAATCACTGGCTTTTGGTGTTATGTAGAGATATTTG TAGACTGATTTTGGAAGAGAAGTAAAAATTGTGAAAATTACAGCTTAATAAATGTTTATT TGTTGTATAGACCCTAAATATATTTCATTACTTCCAAAAAGCAAAAAG |
| Aligned organism(s): 30 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
| 1-602, gnl|bosTau2|chr17 (26181206-26181824) | |
| 1-602, gnl|Hg17|chr12 (124039776-124040393) | |
| 1-602, gnl|Mm7|chr5 (124698995-124699565) | |
| 122-600, gnl|bosTau2|chr11 (65199324-65198838) | |
| 122-600, gnl|Hg17|chr12 (124039895-124040401) | |
| 607-877, gnl|bosTau2|chr17 (26181805-26182084) | |
| 607-877, gnl|canFam2|chr26 (7945652-7945281) | |
| 607-877, gnl|canFam2|chr26 (7945772-7945319) | |
| 607-877, gnl|dasNov1|scaffold_42663 (799-474) | |
| 607-877, gnl|dasNov1|scaffold_42663 (912-512) | |
| 607-877, gnl|echTel1|scaffold_275970 (11955-12307) | |
| 607-877, gnl|echTel1|scaffold_275970 (11839-12270) | |
| 607-877, gnl|hg17|chr12 (124040294-124040649) | |
| 607-877, gnl|Hg17|chr12 (124040373-124040652) | |
| 607-877, gnl|hg17|chr19 (21170500-21170950) | |
| 607-877, gnl|loxAfr1|scaffold_53702 (4877-4506) | |
| 607-877, gnl|loxAfr1|scaffold_8941 (56269-56722) | |
| 607-877, gnl|mm7|chr5 (124699461-124699808) | |
| 607-877, gnl|Mm7|chr5 (124699548-124699807) | |
| 607-877, gnl|monDom2|scaffold_54 (12655915-12655524) | |
| 607-877, gnl|monDom2|scaffold_54 (12656038-12655542) | |
| 607-877, gnl|oryCun1|scaffold_88496 (4321-4661) | |
| 607-877, gnl|panTro1|chr10 (127133886-127134239) | |
| 607-877, gnl|panTro1|chr20 (22149956-22150405) | |
| 607-877, gnl|rheMac2|chr11 (126343804-126344156) | |
| 607-877, gnl|rheMac2|chr19 (20475622-20476062) | |
| 607-877, gnl|rn3|chr12 (32129381-32129044) | |
| 607-877, gnl|rn3|chr7 (5592055-5591628) | |
| 612-832, gnl|bosTau2|chr11 (65198857-65198634) | |
| 612-832, gnl|Hg17|chr12 (124040376-124040596) |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-602, gnl|bosTau2|chr17 (26181206-26181824) | |
| 1-602, gnl|Hg17|chr12 (124039776-124040393) | |
| 1-602, gnl|Mm7|chr5 (124698995-124699565) | |
| 122-600, gnl|bosTau2|chr11 (65199324-65198838) | |
| 122-600, gnl|Hg17|chr12 (124039895-124040401) | |
| 607-877, gnl|bosTau2|chr17 (26181805-26182084) | |
| 607-877, gnl|canFam2|chr26 (7945652-7945281) | |
| 607-877, gnl|canFam2|chr26 (7945772-7945319) | |
| 607-877, gnl|dasNov1|scaffold_42663 (799-474) | |
| 607-877, gnl|dasNov1|scaffold_42663 (912-512) | |
| 607-877, gnl|echTel1|scaffold_275970 (11955-12307) | |
| 607-877, gnl|echTel1|scaffold_275970 (11839-12270) | |
| 607-877, gnl|hg17|chr12 (124040294-124040649) | |
| 607-877, gnl|Hg17|chr12 (124040373-124040652) | |
| 607-877, gnl|hg17|chr19 (21170500-21170950) | |
| 607-877, gnl|loxAfr1|scaffold_53702 (4877-4506) | |
| 607-877, gnl|loxAfr1|scaffold_8941 (56269-56722) | |
| 607-877, gnl|mm7|chr5 (124699461-124699808) | |
| 607-877, gnl|Mm7|chr5 (124699548-124699807) | |
| 607-877, gnl|monDom2|scaffold_54 (12655915-12655524) | |
| 607-877, gnl|monDom2|scaffold_54 (12656038-12655542) | |
| 607-877, gnl|oryCun1|scaffold_88496 (4321-4661) | |
| 607-877, gnl|panTro1|chr10 (127133886-127134239) | |
| 607-877, gnl|panTro1|chr20 (22149956-22150405) | |
| 607-877, gnl|rheMac2|chr11 (126343804-126344156) | |
| 607-877, gnl|rheMac2|chr19 (20475622-20476062) | |
| 607-877, gnl|rn3|chr12 (32129381-32129044) | |
| 607-877, gnl|rn3|chr7 (5592055-5591628) | |
| 612-832, gnl|bosTau2|chr11 (65198857-65198634) | |
| 612-832, gnl|Hg17|chr12 (124040376-124040596) |
| Expressed library(ies): 11 entry(ies) | More info |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
| col (0.195008) | |
| ill (0.175593) | |
| rec (0.17307) | |
| fco (0.157208) | |
| lin (0.145603) | |
| spl (0.143184) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| ret (0.128733) | |
| thg (0.126791) | |
| jej (0.0989218) |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| col (0.195008) | |
| ill (0.175593) | |
| rec (0.17307) | |
| fco (0.157208) | |
| lin (0.145603) | |
| spl (0.143184) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| ret (0.128733) | |
| thg (0.126791) | |
| jej (0.0989218) |