Ss1.1-Pig4-TMW8037B02.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTGTGGCCCTCACCCGTCTCCCCAACTCGATATCCCACTGGCCTCAGGATGGGCGCGCGC GTCTCGGGCAGGCCCCGAGCCGGGACTGGGTTCCTGCTGCTGCTGCTGCTGCTCGGGCTG CTGGCCCCGGGGGCGCAGGGAGCGCGGGGCCGCGGCGGCACCGAGAAGAACAGCTACCGC CGCACAGTCAACACCTTCTCGCAGAGCGTCAGCAGCCTGTTCGGCGAGGACAACGTGCGC GCCGCTCAGAAGTTCTTGACCAGGCTGACGGAGAGATTCGTGCTGGGAGTGGATATGTTT GTGGAAACCCTGTGGAAAGTCTGGGCAGAGCTCTTGGAGGTTCTTGGACTTGACGTCTCC AACCTGTCCCAGTACTTCAGCCCAAGCTCGGTGGCCAGCAGCCCGGCCCGCGCCCTCCTG CTGGTTGGCGTCGTCCTCCTGGCCTACTGGTTCTTGTCCCTAACCCTGGGCTTCACCTTC AGCATCCTGCACCTGGTGTTCGGCCGCTTCTTCTGGGTCGTGCGGGTCATCCTGTTCTCC ATGTCCTGTGTGTACATCCTGCACAAGTACGAGGGGGAGCCTGAGAACGCCGTGCTGCCC CTGTGCTTCGTCGTGGCCATCTACTTCATGACCGGGCCCATGGGCTTCTACTGGCGCAGC AGCTCCGGTGGCCCCAGCGTGGAGGAGAAGCTGGAGTCAGACTCTTAGGACCCCTTCCTG CTCAACATCCGTCTCAACCGAGTTCTGGACAGCCTGGACCGCACCAACGGCAAGTGACAA CCAGCCAGCCGGCCGGGTCCCCTCATATGAGCTGTACAGGAAGAGAAGTTTATGGGCGCA TCAAGTACCAAGTTAATTTTTTTCAAGCGTTTAAATACATCTTTTGTAAGGTTTTTTAAT AAAGGCCGATGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTGTGGCCCTCACCCGTCTCCCCAACTCGATATCCCACTGGCCTCAGGATGGGCGCGCGC GTCTCGGGCAGGCCCCGAGCCGGGACTGGGTTCCTGCTGCTGCTGCTGCTGCTCGGGCTG CTGGCCCCGGGGGCGCAGGGAGCGCGGGGCCGCGGCGGCACCGAGAAGAACAGCTACCGC CGCACAGTCAACACCTTCTCGCAGAGCGTCAGCAGCCTGTTCGGCGAGGACAACGTGCGC GCCGCTCAGAAGTTCTTGACCAGGCTGACGGAGAGATTCGTGCTGGGAGTGGATATGTTT GTGGAAACCCTGTGGAAAGTCTGGGCAGAGCTCTTGGAGGTTCTTGGACTTGACGTCTCC AACCTGTCCCAGTACTTCAGCCCAAGCTCGGTGGCCAGCAGCCCGGCCCGCGCCCTCCTG CTGGTTGGCGTCGTCCTCCTGGCCTACTGGTTCTTGTCCCTAACCCTGGGCTTCACCTTC AGCATCCTGCACCTGGTGTTCGGCCGCTTCTTCTGGGTCGTGCGGGTCATCCTGTTCTCC ATGTCCTGTGTGTACATCCTGCACAAGTACGAGGGGGAGCCTGAGAACGCCGTGCTGCCC CTGTGCTTCGTCGTGGCCATCTACTTCATGACCGGGCCCATGGGCTTCTACTGGCGCAGC AGCTCCGGTGGCCCCAGCGTGGAGGAGAAGCTGGAGTCAGACTCTTAGGACCCCTTCCTG CTCAACATCCGTCTCAACCGAGTTCTGGACAGCCTGGACCGCACCAACGGCAAGTGACAA CCAGCCAGCCGGCCGGGTCCCCTCATATGAGCTGTACAGGAAGAGAAGTTTATGGGCGCA TCAAGTACCAAGTTAATTTTTTTCAAGCGTTTAAATACATCTTTTGTAAGGTTTTTTAAT AAAGGCCGATGG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 1-252, gnl|bosTau2|chr17 (26155700-26155951) | |
| 1-252, gnl|Hg17|chr12 (124003170-124003429) | |
| 1-252, gnl|Mm7|chr5 (124681019-124681304) | |
| 355-802, gnl|bosTau2|chr17 (26176224-26176671) | |
| 355-802, gnl|Hg17|chr12 (124034416-124034881) | |
| 355-802, gnl|Mm7|chr5 (124693737-124694190) | |
| 804-910, gnl|bosTau2|chr17 (26176907-26177012) | |
| 804-910, gnl|canFam2|chr26 (7949440-7949510) | |
| 804-910, gnl|canFam2|chr26 (7949549-7948563) | |
| 804-910, gnl|canFam2|chr26 (7949548-7949433) | |
| 804-910, gnl|dasNov1|scaffold_42663 (4692-4761) | |
| 804-910, gnl|dasNov1|scaffold_42663 (4803-3821) | |
| 804-910, gnl|dasNov1|scaffold_42663 (4802-4685) | |
| 804-910, gnl|galGal2|chr15 (4461378-4462305) | |
| 804-910, gnl|galGal2|chr15 (4461379-4461485) | |
| 804-910, gnl|hg17|chr12 (124035108-124036097) | |
| 804-910, gnl|Hg17|chr12 (124035112-124035218) | |
| 804-910, gnl|hg17|chr19 (21776712-21776822) | |
| 804-910, gnl|hg17|chrY (19855732-19855802) | |
| 804-910, gnl|loxAfr1|scaffold_53702 (8779-8849) | |
| 804-910, gnl|loxAfr1|scaffold_53702 (8890-7878) | |
| 804-910, gnl|loxAfr1|scaffold_53702 (8889-8772) | |
| 804-910, gnl|mm7|chr5 (124694380-124695252) | |
| 804-910, gnl|mm7|chr5 (124694381-124694504) | |
| 804-910, gnl|Mm7|chr5 (124694385-124694494) | |
| 804-910, gnl|monDom2|scaffold_54 (12659515-12659583) | |
| 804-910, gnl|monDom2|scaffold_54 (12659623-12658671) | |
| 804-910, gnl|oryCun1|scaffold_88496 (1245-2084) | |
| 804-910, gnl|oryCun1|scaffold_88496 (1246-1364) | |
| 804-910, gnl|panTro1|chr10 (127128707-127129699) | |
| 804-910, gnl|panTro1|chr10 (127128708-127128825) | |
| 804-910, gnl|panTro1|chrY (20597028-20597098) | |
| 804-910, gnl|rheMac2|chr11 (126338702-126338632) | |
| 804-910, gnl|rheMac2|chr11 (126338591-126339590) | |
| 804-910, gnl|rheMac2|chr19 (21007921-21008027) | |
| 804-910, gnl|rn3|chr12 (32134429-32133538) | |
| 804-910, gnl|rn3|chr12 (32134428-32134306) | |
| 804-910, gnl|xenTro1|scaffold_450 (98138-98249) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-252, gnl|bosTau2|chr17 (26155700-26155951) | |
| 1-252, gnl|Hg17|chr12 (124003170-124003429) | |
| 1-252, gnl|Mm7|chr5 (124681019-124681304) | |
| 355-802, gnl|bosTau2|chr17 (26176224-26176671) | |
| 355-802, gnl|Hg17|chr12 (124034416-124034881) | |
| 355-802, gnl|Mm7|chr5 (124693737-124694190) | |
| 804-910, gnl|bosTau2|chr17 (26176907-26177012) | |
| 804-910, gnl|canFam2|chr26 (7949440-7949510) | |
| 804-910, gnl|canFam2|chr26 (7949549-7948563) | |
| 804-910, gnl|canFam2|chr26 (7949548-7949433) | |
| 804-910, gnl|dasNov1|scaffold_42663 (4692-4761) | |
| 804-910, gnl|dasNov1|scaffold_42663 (4803-3821) | |
| 804-910, gnl|dasNov1|scaffold_42663 (4802-4685) | |
| 804-910, gnl|galGal2|chr15 (4461378-4462305) | |
| 804-910, gnl|galGal2|chr15 (4461379-4461485) | |
| 804-910, gnl|hg17|chr12 (124035108-124036097) | |
| 804-910, gnl|Hg17|chr12 (124035112-124035218) | |
| 804-910, gnl|hg17|chr19 (21776712-21776822) | |
| 804-910, gnl|hg17|chrY (19855732-19855802) | |
| 804-910, gnl|loxAfr1|scaffold_53702 (8779-8849) | |
| 804-910, gnl|loxAfr1|scaffold_53702 (8890-7878) | |
| 804-910, gnl|loxAfr1|scaffold_53702 (8889-8772) | |
| 804-910, gnl|mm7|chr5 (124694380-124695252) | |
| 804-910, gnl|mm7|chr5 (124694381-124694504) | |
| 804-910, gnl|Mm7|chr5 (124694385-124694494) | |
| 804-910, gnl|monDom2|scaffold_54 (12659515-12659583) | |
| 804-910, gnl|monDom2|scaffold_54 (12659623-12658671) | |
| 804-910, gnl|oryCun1|scaffold_88496 (1245-2084) | |
| 804-910, gnl|oryCun1|scaffold_88496 (1246-1364) | |
| 804-910, gnl|panTro1|chr10 (127128707-127129699) | |
| 804-910, gnl|panTro1|chr10 (127128708-127128825) | |
| 804-910, gnl|panTro1|chrY (20597028-20597098) | |
| 804-910, gnl|rheMac2|chr11 (126338702-126338632) | |
| 804-910, gnl|rheMac2|chr11 (126338591-126339590) | |
| 804-910, gnl|rheMac2|chr19 (21007921-21008027) | |
| 804-910, gnl|rn3|chr12 (32134429-32133538) | |
| 804-910, gnl|rn3|chr12 (32134428-32134306) | |
| 804-910, gnl|xenTro1|scaffold_450 (98138-98249) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| nje (0.16592) | |
| cje (0.165235) | |
| ute (0.132784) | |
| sug (0.127291) | |
| eje (0.0988338) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nje (0.16592) | |
| cje (0.165235) | |
| ute (0.132784) | |
| sug (0.127291) | |
| eje (0.0988338) |