Non-Coding RNA Search

Ss1.1-Pig4-TMW8037B06.3

Sequence:


               
               TTGCTGGGTCTGGGACCAAATCCCAATCCTTGGTATCTAGCCAGAAGCCATTGGACAGGC
CACCTGCCCTGGCAGGACCAAGGTCCCAACTATCTGACAAACCCTCTCCAGTGACCAGTC
CAAGCTCCTCACCCTCAGTCAGGTCCCAACCACTGGAAAGGCCCCTGGGGACAGCTGACC
CAAGGCTGGATAAATCCATAGGTGCTGCCAGCCCAAGGCCCCAGTCACTAGAGAAAACCC
CAGTCCCTACTGGCCTGAGACTTCCACCGCCAGACAGACTGCTAGTCACCAGCGGTCCCA
AACCCCAGTCTTCAGACAGGCCCCCTGACAAATCCCATGCCTCTTTGTCCCAGAGACTCC
CACCTCCTGACAAAGTACTATCAGCTGTGGTCCAGACCCTGGTAGCAAAAGAAAAAGCAC
TAAGGCCTGTGGACCAGAATACTCAGTCAAAAAATAGAGCTGCTTTGGTGATGGATCTAA
TAGACCTAACTCCTCGCCAGAAGGAACGGGCAGCTTCTCCCCATGACATCATACCCCAGG
CCGATGAGAAGATGCCAGTGTTGGAGTCGACCTCGTGGCCTGCCAGCAAATGTCTGGGAC
AGATGCCACGAGCTGTTGAGAGAAGCAGTGTATCAGATCCTGTCCTTCTGCCACCAAGCA
AAGCAGCGGCCCCTCCGGAACACCCCTGGCAAGCTGTTAAATCACTCACCCAGGCCAGAC
TTCTTTCTCAGCCCCCTGCCAAGGCTTTTTTATATGAGCCAACAACTCAGGCCTCAGGAA
GAGCACCTGCAGGGGCTGAGCAGACCACAGGGCCTCCCAGCCAAGCACCAGGCCTAGTGA
AGCAGGTGAAGCAGTTGGTCGGAGGCCAGCAACTACCTGGACTTGCTGCCAAGAGTGGGC
AGTCCTTCAGGCCTCTTGGGAAAACTCCATCCTCCCTCTCCACTGAAGAGAAGAAATTGA
CAACCACGGAGCAGAATCCCTGGGCCCTGGGAAAGGCCTCACCAGGGCCAGGGCTTTGGC
CCATGGTGGCTGGACAGACACTGGCACAGTCTTGCTGGTCCTCTGGGAGCACACAGACAT
TGGCACAGACTTGCTGGTCCCTTGGAAGAGGGCAAGACCCTAAACCAGAGCAAAATACAC
TTCCAGCTCTTAACCAGGCTCCTTCCAGTCATAAGTGTGCAGAGTCAGAACAGAAATAAT
ACCAGTAAATGTCACATGACCAGACCAGCTGCCCCAGGGTTCTTGGGGAAGGGAAATGTT
TTTCCCTCTTAAAAAACAGACACCTCCCCCCCACAACACTTTTCCACTGTTATTCTTTAC
TTATATCCCAACACTCAGAACTCTTGTGATATTAGCAAGTGGGGGCTTGTGGTTGTATGA
ACCATGTATGAAAATCCAGTGGGCCCCAGCCGAGGAGACAGACAGACTCGGATCTCTTTC
CCCAAACCTTTACTCATGGTGAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGCTGGGTCTGGGACCAAATCCCAATCCTTGGTATCTAGCCAGAAGCCATTGGACAGGC
CACCTGCCCTGGCAGGACCAAGGTCCCAACTATCTGACAAACCCTCTCCAGTGACCAGTC
CAAGCTCCTCACCCTCAGTCAGGTCCCAACCACTGGAAAGGCCCCTGGGGACAGCTGACC
CAAGGCTGGATAAATCCATAGGTGCTGCCAGCCCAAGGCCCCAGTCACTAGAGAAAACCC
CAGTCCCTACTGGCCTGAGACTTCCACCGCCAGACAGACTGCTAGTCACCAGCGGTCCCA
AACCCCAGTCTTCAGACAGGCCCCCTGACAAATCCCATGCCTCTTTGTCCCAGAGACTCC
CACCTCCTGACAAAGTACTATCAGCTGTGGTCCAGACCCTGGTAGCAAAAGAAAAAGCAC
TAAGGCCTGTGGACCAGAATACTCAGTCAAAAAATAGAGCTGCTTTGGTGATGGATCTAA
TAGACCTAACTCCTCGCCAGAAGGAACGGGCAGCTTCTCCCCATGACATCATACCCCAGG
CCGATGAGAAGATGCCAGTGTTGGAGTCGACCTCGTGGCCTGCCAGCAAATGTCTGGGAC
AGATGCCACGAGCTGTTGAGAGAAGCAGTGTATCAGATCCTGTCCTTCTGCCACCAAGCA
AAGCAGCGGCCCCTCCGGAACACCCCTGGCAAGCTGTTAAATCACTCACCCAGGCCAGAC
TTCTTTCTCAGCCCCCTGCCAAGGCTTTTTTATATGAGCCAACAACTCAGGCCTCAGGAA
GAGCACCTGCAGGGGCTGAGCAGACCACAGGGCCTCCCAGCCAAGCACCAGGCCTAGTGA
AGCAGGTGAAGCAGTTGGTCGGAGGCCAGCAACTACCTGGACTTGCTGCCAAGAGTGGGC
AGTCCTTCAGGCCTCTTGGGAAAACTCCATCCTCCCTCTCCACTGAAGAGAAGAAATTGA
CAACCACGGAGCAGAATCCCTGGGCCCTGGGAAAGGCCTCACCAGGGCCAGGGCTTTGGC
CCATGGTGGCTGGACAGACACTGGCACAGTCTTGCTGGTCCTCTGGGAGCACACAGACAT
TGGCACAGACTTGCTGGTCCCTTGGAAGAGGGCAAGACCCTAAACCAGAGCAAAATACAC
TTCCAGCTCTTAACCAGGCTCCTTCCAGTCATAAGTGTGCAGAGTCAGAACAGAAATAAT
ACCAGTAAATGTCACATGACCAGACCAGCTGCCCCAGGGTTCTTGGGGAAGGGAAATGTT
TTTCCCTCTTAAAAAACAGACACCTCCCCCCCACAACACTTTTCCACTGTTATTCTTTAC
TTATATCCCAACACTCAGAACTCTTGTGATATTAGCAAGTGGGGGCTTGTGGTTGTATGA
ACCATGTATGAAAATCCAGTGGGCCCCAGCCGAGGAGACAGACAGACTCGGATCTCTTTC
CCCAAACCTTTACTCATGGTGAAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8C480_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8C480_MOUSE

Predicted RNA structure(s): 4 entry(ies)

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Predicted RNA structure(s): 4 entry(ies)

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               1-599, - strand, RNAz p=0.921574
               

               
               680-839, - strand, RNAz p=0.945128
               

               
               920-1079, - strand, RNAz p=0.993647
               

               
               1200-1308, + strand, RNAz p=0.521981

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-599, - strand, RNAz p=0.921574
               

               
               680-839, - strand, RNAz p=0.945128
               

               
               920-1079, - strand, RNAz p=0.993647
               

               
               1200-1308, + strand, RNAz p=0.521981

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_172349, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_172349, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1464, gnl|bosTau2|chr7 (21492092-21493548)
               

               
               1-1464, gnl|Hg17|chr5 (176653871-176655340)
               

               
               1-1464, gnl|Mm7|chr13 (54392692-54394128)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1464, gnl|bosTau2|chr7 (21492092-21493548)
               

               
               1-1464, gnl|Hg17|chr5 (176653871-176655340)
               

               
               1-1464, gnl|Mm7|chr13 (54392692-54394128)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               elu (0.385356)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)

	1-599, - strand, RNAz p=0.921574
	680-839, - strand, RNAz p=0.945128
	920-1079, - strand, RNAz p=0.993647
	1200-1308, + strand, RNAz p=0.521981

	1-1464, gnl\|bosTau2\|chr7 (21492092-21493548)
	1-1464, gnl\|Hg17\|chr5 (176653871-176655340)
	1-1464, gnl\|Mm7\|chr13 (54392692-54394128)