Non-Coding RNA Search

Ss1.1-Pig4-TMW8037B09.5

Sequence:


               
               CAGAGAGCGCCTCCGAGGAATGCTTGTGAAGTAAGTAATGGCTGCGCCTGTGCTTCCGTG
GGTTCCCACACAGAGATGCCAGTATTGAGAAATATTACAAATGAAGTTGTTCAGCCAAAA
GCAACACAGCAGTGGAACGAAAAACCTGCCTTCTTGTTAAAGAACTTTAAACCGAGTCCT
GCAGTGAACCTCCGAACTGGAAAAGCAGAGTTTACCCAACATCCTGAGAAAGAAAATGTA
AGGGATACTCCAGTTTTTCCTGAAAGTTTGAAACCTCCTGAAACTCTAAAACAAATGAAC
AGTATGAATTCAGTAGGGACCTTCTTAGACGTGAAGCGTCTCAGACAGTTGCCAAAATTG
TTTTAACCCTGTAACTCTCTGCCCTCCTGATAGGAGGATGGGATGTCTCCTGAAGATACT
TAGGAAAACCAGAGCCTTTTGATAAATTTTGGAATTCTCAATCCTTTAGGGACCATTCCA
TTTCTTGGTAGCAGCTGATGGCAAAGAGCTGAACAAGTGACCTGATTGTCTATGAGATGG
CTGGCTAGTAGGAGGGCTAAGTGCTGTTTTTTCAAATAGGACTGTTCAGCTTCACAGGAC
GTTTTAAAAAAAAAAATTCCTGACATCAGTTATTTCAACAAATTTGGATAAGCAGATACT
ATCCAGCTCTGAATCTGAATTGATCTTTTATACTGTACATTTTGAAAAGTCTGTCTGTTC
TCCTAGCATTTTGTATCTCTGCATCTACCCAGTATCACCTAAAAGAACATAAAAGTTATC
ATGACTCTGACTAAATTAGCTAAATCAACCCTTATTGAATTTAAGGGGAAAGTTTTTTTT
TTTTAAATAACTTAAGATCTTTTATACATGGAGTATGTATGTCCTCTTAATTAAGATGTG
TATTTGTTAAATTCTGTGGAAGTAAAACATTTGCACTCTGGTGGGTTGATGTTACTGTAG
CATTTTCAACATAGAGCACTGGCTCTCACAGAATAAGCAAACTATGGTGTGTGAGTGTGT
TTTATAAACTTTGTTTTTCAAATGTTTTGATATTTTTTAATGGAACTTAATAAAAATGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGAGAGCGCCTCCGAGGAATGCTTGTGAAGTAAGTAATGGCTGCGCCTGTGCTTCCGTG
GGTTCCCACACAGAGATGCCAGTATTGAGAAATATTACAAATGAAGTTGTTCAGCCAAAA
GCAACACAGCAGTGGAACGAAAAACCTGCCTTCTTGTTAAAGAACTTTAAACCGAGTCCT
GCAGTGAACCTCCGAACTGGAAAAGCAGAGTTTACCCAACATCCTGAGAAAGAAAATGTA
AGGGATACTCCAGTTTTTCCTGAAAGTTTGAAACCTCCTGAAACTCTAAAACAAATGAAC
AGTATGAATTCAGTAGGGACCTTCTTAGACGTGAAGCGTCTCAGACAGTTGCCAAAATTG
TTTTAACCCTGTAACTCTCTGCCCTCCTGATAGGAGGATGGGATGTCTCCTGAAGATACT
TAGGAAAACCAGAGCCTTTTGATAAATTTTGGAATTCTCAATCCTTTAGGGACCATTCCA
TTTCTTGGTAGCAGCTGATGGCAAAGAGCTGAACAAGTGACCTGATTGTCTATGAGATGG
CTGGCTAGTAGGAGGGCTAAGTGCTGTTTTTTCAAATAGGACTGTTCAGCTTCACAGGAC
GTTTTAAAAAAAAAAATTCCTGACATCAGTTATTTCAACAAATTTGGATAAGCAGATACT
ATCCAGCTCTGAATCTGAATTGATCTTTTATACTGTACATTTTGAAAAGTCTGTCTGTTC
TCCTAGCATTTTGTATCTCTGCATCTACCCAGTATCACCTAAAAGAACATAAAAGTTATC
ATGACTCTGACTAAATTAGCTAAATCAACCCTTATTGAATTTAAGGGGAAAGTTTTTTTT
TTTTAAATAACTTAAGATCTTTTATACATGGAGTATGTATGTCCTCTTAATTAAGATGTG
TATTTGTTAAATTCTGTGGAAGTAAAACATTTGCACTCTGGTGGGTTGATGTTACTGTAG
CATTTTCAACATAGAGCACTGGCTCTCACAGAATAAGCAAACTATGGTGTGTGAGTGTGT
TTTATAAACTTTGTTTTTCAAATGTTTTGATATTTTTTAATGGAACTTAATAAAAATGTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61831986|ref|XP_602664.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61831986|ref|XP_602664.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               321-479, + strand, RNAz p=0.851421

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               321-479, + strand, RNAz p=0.851421

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_003035, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_003035, +

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-1006, gnl|bosTau2|chr27 (16702325-16701350)
               

               
               1-1006, gnl|Hg17|chr1 (47429193-47427925)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1006, gnl|bosTau2|chr27 (16702325-16701350)
               

               
               1-1006, gnl|Hg17|chr1 (47429193-47427925)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               amn (0.417711)
               

               
               spl (0.143184)
               

               
               kid (0.129735)
               

               
               ebs (0.118301)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               spl (0.143184)
               

               
               kid (0.129735)
               

               
               ebs (0.118301)

	1-1006, gnl\|bosTau2\|chr27 (16702325-16701350)
	1-1006, gnl\|Hg17\|chr1 (47429193-47427925)