Ss1.1-Pig4-TMW8037B12.3
|
CGCCGCCCGCGCCAGGAAACGGCAGTGAGTCCGAGGAGGACCGCAGTGTAGACAGCATGG
AGAACCAGGCCCTGCCCAGCACCCACCGGGTGCCTGACTCCAAACTCCACTCTGTCCACA
CCAAGATGGACGTGATCAAGAAAGGGCACGCCAAGGACAGCCAGCGCTACAAGGTCGACT
ACGAGTCTCAGAGCACGGACACCCAGAACTTCTCCTCTGAGTCCAAGCGCGAGACGGAAT
ACGGGCCTTGCCGCCGGGAAATGGAGGACACGCTGAACCACCTCAAGTTCCTGAACATGC
TCAGCCCCCGGGGCATCCACATCCCCAACTGCGACAAGAAGGGCTTCTACAAGAAAAAGC
AGTGCCGCCCTTCCAAAGGCAGGAAGCGGGGCTTCTGCTGGTGCGTGGATAAGTACGGGC
AGCCCCTCCCGGGCTTCGACGTGAAGGGGAAAGGGGACGTGCACTGCTACAGCATGGAGA
GCAAGTAGACGCTGCGCCCACTTCATGTGGAGCTCAAATATGCCTTATTTTGCACAAAAG
ACTGCCAAGGACACGATCAGCAGCTGGCTACAACCTCGATTTCTATGTCTCCTTGTGGCG
AATTGATTTTTTTTTTTTTTTAAACCAAAGTTTAGAAAGAGATGTTTGAAATGCCTGGTT
TTCTTCCAAACGGTGACTTTGGCAGGCATCTCTCCACTTTCCAGTAGTTGGTGAAATGCA
GTTTGATTTTTCGTATCGCTTCCTATAAAAGTACTTGTAAGCTCAAGCACAGTCCGGCCA
TAGCTCACCCCGCCCCGGAGCCGTCCCTGTCCGCTGACACCCCCCTGACCCTCCGCTTCA
CGCCTTAGCCACACTGTTGCTTACGCAGACGCAGGCTTTGTCCCCACTCTGTAAGATGAG
ACAGGCCTCATCCCAAAGAGGAAAAAGCCCTGTACCCGGGTGCTTGCACGTCCCAAAGCA
TCCACGGGGAGCTGCATCTTGGAAGCGAAGGCCCAGGGATCCCTAGAGCAAGAAGCTATT
TTGTCTGTCTAAGGGACCTGTACTGCTTGGCTACAATGAGAGACTAAGGTGGAATCTTAT
AGACGAACAAACAAAAAGACCAAGAATGTTCTGGAGAACGCTGGGAACCTGCAAGGGCAG
GGACTTCTGACCCTCCTTTGTCAGGTGGCTTCCTGAAGACGCAGCCTTTGCTGAGGCCCC
ACGGGGCAGGGGGCAGGGCGACAGCCAGAGCCGTCACACCTTGTAGCCTCTTCTCTGATG
GATGACTATGGAACGTAGTGTTTTCCCAGTCAGCAATGCAAGAGCAAGTTTATTCTGGAA
GATAAGCCTCTGAAAGGCCAAGGAGGTTTATTTTCATCTCTCACCTTTCGTCCTCCTTGG
CACCCTGTACAAAATAATTCCGTCTAAGCAAGAATGGTGAGTGGCTGGCTGGAGAGCCGG
TCAAGGACACTGGGAGCCCACGGACTGGCCCTTGCTTGCTGCCCTCCGAACCCCTCCTCT
TCCTGACTCCCAAGTACACACAGCGAGAATCCCCTCTTGACTGTTCACCTTGTATATGCA
TCGTCGTCCAAATAGGGCAGCCCCTGTACCGTAATCCTAGGTGAATCCTTAGCGATGCTA
GAGCATAGAAGCATGGCCGTGACCTGGGAGGGGGCTCGTGCTCGGTCCCCGGCCGCCCGG
CTGTGGCCTCTGGTTGGGCACCTGCTGCACACAGCCCTCCTCGAGAACACAAAGGGATCT
TCAGACGTTCTGCCTACCTATTAGCTTTCCTTTATTTTTTTAATTAAGTTTTTGAGAAAA
AGAAAGGTATTTTTGAAAAGTTTGTCTTGCAATGTATTTATAAATAGTAAATAAAGTTTT
TACCATAAAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CGCCGCCCGCGCCAGGAAACGGCAGTGAGTCCGAGGAGGACCGCAGTGTAGACAGCATGG
AGAACCAGGCCCTGCCCAGCACCCACCGGGTGCCTGACTCCAAACTCCACTCTGTCCACA
CCAAGATGGACGTGATCAAGAAAGGGCACGCCAAGGACAGCCAGCGCTACAAGGTCGACT
ACGAGTCTCAGAGCACGGACACCCAGAACTTCTCCTCTGAGTCCAAGCGCGAGACGGAAT
ACGGGCCTTGCCGCCGGGAAATGGAGGACACGCTGAACCACCTCAAGTTCCTGAACATGC
TCAGCCCCCGGGGCATCCACATCCCCAACTGCGACAAGAAGGGCTTCTACAAGAAAAAGC
AGTGCCGCCCTTCCAAAGGCAGGAAGCGGGGCTTCTGCTGGTGCGTGGATAAGTACGGGC
AGCCCCTCCCGGGCTTCGACGTGAAGGGGAAAGGGGACGTGCACTGCTACAGCATGGAGA
GCAAGTAGACGCTGCGCCCACTTCATGTGGAGCTCAAATATGCCTTATTTTGCACAAAAG
ACTGCCAAGGACACGATCAGCAGCTGGCTACAACCTCGATTTCTATGTCTCCTTGTGGCG
AATTGATTTTTTTTTTTTTTTAAACCAAAGTTTAGAAAGAGATGTTTGAAATGCCTGGTT
TTCTTCCAAACGGTGACTTTGGCAGGCATCTCTCCACTTTCCAGTAGTTGGTGAAATGCA
GTTTGATTTTTCGTATCGCTTCCTATAAAAGTACTTGTAAGCTCAAGCACAGTCCGGCCA
TAGCTCACCCCGCCCCGGAGCCGTCCCTGTCCGCTGACACCCCCCTGACCCTCCGCTTCA
CGCCTTAGCCACACTGTTGCTTACGCAGACGCAGGCTTTGTCCCCACTCTGTAAGATGAG
ACAGGCCTCATCCCAAAGAGGAAAAAGCCCTGTACCCGGGTGCTTGCACGTCCCAAAGCA
TCCACGGGGAGCTGCATCTTGGAAGCGAAGGCCCAGGGATCCCTAGAGCAAGAAGCTATT
TTGTCTGTCTAAGGGACCTGTACTGCTTGGCTACAATGAGAGACTAAGGTGGAATCTTAT
AGACGAACAAACAAAAAGACCAAGAATGTTCTGGAGAACGCTGGGAACCTGCAAGGGCAG
GGACTTCTGACCCTCCTTTGTCAGGTGGCTTCCTGAAGACGCAGCCTTTGCTGAGGCCCC
ACGGGGCAGGGGGCAGGGCGACAGCCAGAGCCGTCACACCTTGTAGCCTCTTCTCTGATG
GATGACTATGGAACGTAGTGTTTTCCCAGTCAGCAATGCAAGAGCAAGTTTATTCTGGAA
GATAAGCCTCTGAAAGGCCAAGGAGGTTTATTTTCATCTCTCACCTTTCGTCCTCCTTGG
CACCCTGTACAAAATAATTCCGTCTAAGCAAGAATGGTGAGTGGCTGGCTGGAGAGCCGG
TCAAGGACACTGGGAGCCCACGGACTGGCCCTTGCTTGCTGCCCTCCGAACCCCTCCTCT
TCCTGACTCCCAAGTACACACAGCGAGAATCCCCTCTTGACTGTTCACCTTGTATATGCA
TCGTCGTCCAAATAGGGCAGCCCCTGTACCGTAATCCTAGGTGAATCCTTAGCGATGCTA
GAGCATAGAAGCATGGCCGTGACCTGGGAGGGGGCTCGTGCTCGGTCCCCGGCCGCCCGG
CTGTGGCCTCTGGTTGGGCACCTGCTGCACACAGCCCTCCTCGAGAACACAAAGGGATCT
TCAGACGTTCTGCCTACCTATTAGCTTTCCTTTATTTTTTTAATTAAGTTTTTGAGAAAA
AGAAAGGTATTTTTGAAAAGTTTGTCTTGCAATGTATTTATAAATAGTAAATAAAGTTTT
TACCATAAAAAAAAAAAAAAAAAA
|
|
gi|37678179|gb|AAQ97624.1| |
Protein identifier
|
gi|37678179|gb|AAQ97624.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
3' of BC064987, + |
|
5' of NM_000598, + |
Human gene identifier and UTR site,
human gene reading direction
|
3' of BC064987, + |
|
5' of NM_000598, + |
|
14-243, gnl|bosTau2|chr4 (43681569-43681340) |
|
14-243, gnl|Hg17|chr7 (45730280-45730051) |
|
14-243, gnl|Mm7|chr11 (7162255-7162026) |
| |
|
359-490, gnl|bosTau2|chr4 (43679971-43679840) |
|
359-490, gnl|Hg17|chr7 (45727788-45727657) |
|
359-490, gnl|Mm7|chr11 (7160519-7160385) |
| |
|
502-1176, gnl|bosTau2|chr4 (43678284-43677632) |
|
502-1176, gnl|canFam2|chr16 (4018267-4017775) |
|
502-1176, gnl|dasNov1|scaffold_297061 (861-329) |
|
502-1176, gnl|echTel1|scaffold_297078 (55204-54662) |
|
502-1176, gnl|hg17|chr7 (45725989-45726532) |
|
502-1176, gnl|Hg17|chr7 (45726673-45725988) |
|
502-1176, gnl|loxAfr1|scaffold_146585 (4453-4986) |
|
502-1176, gnl|mm7|chr11 (7158827-7159334) |
|
502-1176, gnl|Mm7|chr11 (7159514-7158826) |
|
502-1176, gnl|monDom2|scaffold_5 (67376191-67375652) |
|
502-1176, gnl|panTro1|chr6 (47202838-47203381) |
|
502-1176, gnl|rheMac2|chr3 (80581931-80581388) |
|
502-1176, gnl|rn3|chr14 (87978980-87979488) |
| |
|
1664-1880, gnl|bosTau2|chr10 (25962158-25961949) |
|
1664-1880, gnl|Mm7|chr11 (7158306-7158094) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
14-243, gnl|bosTau2|chr4 (43681569-43681340) |
|
14-243, gnl|Hg17|chr7 (45730280-45730051) |
|
14-243, gnl|Mm7|chr11 (7162255-7162026) |
| |
|
359-490, gnl|bosTau2|chr4 (43679971-43679840) |
|
359-490, gnl|Hg17|chr7 (45727788-45727657) |
|
359-490, gnl|Mm7|chr11 (7160519-7160385) |
| |
|
502-1176, gnl|bosTau2|chr4 (43678284-43677632) |
|
502-1176, gnl|canFam2|chr16 (4018267-4017775) |
|
502-1176, gnl|dasNov1|scaffold_297061 (861-329) |
|
502-1176, gnl|echTel1|scaffold_297078 (55204-54662) |
|
502-1176, gnl|hg17|chr7 (45725989-45726532) |
|
502-1176, gnl|Hg17|chr7 (45726673-45725988) |
|
502-1176, gnl|loxAfr1|scaffold_146585 (4453-4986) |
|
502-1176, gnl|mm7|chr11 (7158827-7159334) |
|
502-1176, gnl|Mm7|chr11 (7159514-7158826) |
|
502-1176, gnl|monDom2|scaffold_5 (67376191-67375652) |
|
502-1176, gnl|panTro1|chr6 (47202838-47203381) |
|
502-1176, gnl|rheMac2|chr3 (80581931-80581388) |
|
502-1176, gnl|rn3|chr14 (87978980-87979488) |
| |
|
1664-1880, gnl|bosTau2|chr10 (25962158-25961949) |
|
1664-1880, gnl|Mm7|chr11 (7158306-7158094) |
|
pla (0.935704) |
|
amn (0.835422) |
|
cly (0.723851) |
|
cki (0.660939) |
|
cut (0.509771) |
|
ece (0.45861) |
|
lnt (0.426925) |
|
ute (0.398353) |
|
elu (0.385356) |
|
ese (0.379507) |
|
sme (0.305437) |
|
cag (0.302389) |
|
lun (0.300978) |
|
eru (0.240096) |
|
jca (0.22792) |
|
cty (0.20816) |
|
fcc (0.197785) |
|
nep (0.183925) |
|
fhi (0.169578) |
|
hyp (0.142837) |
|
cst (0.140036) |
|
nmm (0.132802) |
|
bla (0.124347) |
|
eep (0.122564) |
|
pla (0.935704) |
|
amn (0.835422) |
|
cly (0.723851) |
|
cki (0.660939) |
|
cut (0.509771) |
|
ece (0.45861) |
|
lnt (0.426925) |
|
ute (0.398353) |
|
elu (0.385356) |
|
ese (0.379507) |
|
sme (0.305437) |
|
cag (0.302389) |
|
lun (0.300978) |
|
eru (0.240096) |
|
jca (0.22792) |
|
cty (0.20816) |
|
fcc (0.197785) |
|
nep (0.183925) |
|
fhi (0.169578) |
|
hyp (0.142837) |
|
cst (0.140036) |
|
nmm (0.132802) |
|
bla (0.124347) |
|
eep (0.122564) |
