Ss1.1-Pig4-TMW8037B15.3
|
TGGCGCGCAGAGCTGCAGCTACCGGCGGGAACGTGAGCGGCGGCGGCGGCGGAAGTAGCC
CACGAGCCTAGTCCCCGCCGACACCATGCTTCCCTTGTCGCTGCTGAAAACAGCTCAGAA
TCACCCAATGTTGGTAGAGCTCAAAAACGGGGAGACGTATAATGGGCATCTGGTGAGCTG
TGACAACTGGATGAACATCAACTTGCGTGAGGTGATCTGCACATCCAGGGATGGGGACAA
ATTCTGGCGGATGCCCGAGTGTTACATCCGTGGCAGCACCATCAAGTACCTCCGCATCCC
TGACGAGATCATCGACATGGTCAAGGAGGAGGTGGTGGCCAAGGGCCGTGGCCGCGGTGG
CCTGCAGCAGCAGAAGCAGCAAAAGGGCCGTGGTATGGGGGGTGCTGGAAGAGGTGTGTT
TGGTGGCCGGGGCCGAGGTGGCATCCCAGGCACTGGCAGAGGTCAGCCAGAAAAGAAGCC
GGGCAGACAGGCGGGGAAACAGTGAGCACCCCCTCTGCTCCCCAGAGACTGAGCCGAAAT
CACCAGGCATCTGCTCCCACTCCCAAGGCCGCTTTTCTACTCTCCAGTTCATAAGTCTTT
TCAGCACAAAAAGAAGAGGCAGGTATCTGGGGGAGGACCCCCTGCCTGTCATCTTGCGAT
CCTCCCCCCTTTTTTTAGCTAGTGGTTCTACAGTTGGAAATGTTATTCTGTGCTTCTGGG
TTTGTGACGTCACAGCCCACTTGATTCCTGGAAGATTCTGTTTAATGCATCTTTACAGCA
CTCACTCTTCTTTTAAGGGCAGGCATTTTCCCAACAGGTTTGTTCTGCATTTTGTGTTAG
ATCCCCGTGTGGTGAGCAGACGGGAGGTCTTTATTTTAAGCTCTTTGCACTGAGATTGAC
AGCCTGGAGAGTTTCCTAAAACACAGACCCCGAAATTGCCTTGTCAAAACGTATGCTCTA
GAAGCTGTTCTGGGATGACGCTGGGCCCCATCCCTTCGCCTCCTCTCTCCCTCTTTGTAT
TACAAAAATAAAAACAAATACAACAAAAAAAAAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TGGCGCGCAGAGCTGCAGCTACCGGCGGGAACGTGAGCGGCGGCGGCGGCGGAAGTAGCC
CACGAGCCTAGTCCCCGCCGACACCATGCTTCCCTTGTCGCTGCTGAAAACAGCTCAGAA
TCACCCAATGTTGGTAGAGCTCAAAAACGGGGAGACGTATAATGGGCATCTGGTGAGCTG
TGACAACTGGATGAACATCAACTTGCGTGAGGTGATCTGCACATCCAGGGATGGGGACAA
ATTCTGGCGGATGCCCGAGTGTTACATCCGTGGCAGCACCATCAAGTACCTCCGCATCCC
TGACGAGATCATCGACATGGTCAAGGAGGAGGTGGTGGCCAAGGGCCGTGGCCGCGGTGG
CCTGCAGCAGCAGAAGCAGCAAAAGGGCCGTGGTATGGGGGGTGCTGGAAGAGGTGTGTT
TGGTGGCCGGGGCCGAGGTGGCATCCCAGGCACTGGCAGAGGTCAGCCAGAAAAGAAGCC
GGGCAGACAGGCGGGGAAACAGTGAGCACCCCCTCTGCTCCCCAGAGACTGAGCCGAAAT
CACCAGGCATCTGCTCCCACTCCCAAGGCCGCTTTTCTACTCTCCAGTTCATAAGTCTTT
TCAGCACAAAAAGAAGAGGCAGGTATCTGGGGGAGGACCCCCTGCCTGTCATCTTGCGAT
CCTCCCCCCTTTTTTTAGCTAGTGGTTCTACAGTTGGAAATGTTATTCTGTGCTTCTGGG
TTTGTGACGTCACAGCCCACTTGATTCCTGGAAGATTCTGTTTAATGCATCTTTACAGCA
CTCACTCTTCTTTTAAGGGCAGGCATTTTCCCAACAGGTTTGTTCTGCATTTTGTGTTAG
ATCCCCGTGTGGTGAGCAGACGGGAGGTCTTTATTTTAAGCTCTTTGCACTGAGATTGAC
AGCCTGGAGAGTTTCCTAAAACACAGACCCCGAAATTGCCTTGTCAAAACGTATGCTCTA
GAAGCTGTTCTGGGATGACGCTGGGCCCCATCCCTTCGCCTCCTCTCTCCCTCTTTGTAT
TACAAAAATAAAAACAAATACAACAAAAAAAAAAAAAAAAAAAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
130-230, gnl|bosTau2|chr19 (51032324-51032424) |
|
130-230, gnl|canFam2|chr20 (47716808-47716718) |
|
130-230, gnl|danRer3|chr20 (3398814-3398904) |
|
130-230, gnl|echTel1|scaffold_208629 (2663-2583) |
|
130-230, gnl|fr1|chrUn (191857410-191857495) |
|
130-230, gnl|galGal2|chr28 (3296579-3296489) |
|
130-230, gnl|hg17|chr19 (18284408-18284498) |
|
130-230, gnl|Hg17|chr19 (18284513-18284413) |
|
130-230, gnl|loxAfr1|scaffold_71734 (6741-6651) |
|
130-230, gnl|mm7|chr8 (69133023-69132933) |
|
130-230, gnl|Mm7|chr8 (69132916-69133016) |
|
130-230, gnl|monDom2|scaffold_987 (1316-1227) |
|
130-230, gnl|oryCun1|scaffold_215417 (105033-105114) |
|
130-230, gnl|rheMac2|chr19 (17903863-17903953) |
|
130-230, gnl|rn3|chr16 (19261970-19262060) |
|
130-230, gnl|tetNig1|chr1 (14867029-14867114) |
|
130-230, gnl|xenTro1|scaffold_296 (1082763-1082674) |
| |
|
412-1050, gnl|bosTau2|chr19 (51036999-51037634) |
|
412-1050, gnl|Hg17|chr19 (18279367-18278724) |
| |
|
804-950, gnl|bosTau2|chr10 (30921580-30921724) |
|
804-950, gnl|Hg17|chr19 (18278974-18278831) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
130-230, gnl|bosTau2|chr19 (51032324-51032424) |
|
130-230, gnl|canFam2|chr20 (47716808-47716718) |
|
130-230, gnl|danRer3|chr20 (3398814-3398904) |
|
130-230, gnl|echTel1|scaffold_208629 (2663-2583) |
|
130-230, gnl|fr1|chrUn (191857410-191857495) |
|
130-230, gnl|galGal2|chr28 (3296579-3296489) |
|
130-230, gnl|hg17|chr19 (18284408-18284498) |
|
130-230, gnl|Hg17|chr19 (18284513-18284413) |
|
130-230, gnl|loxAfr1|scaffold_71734 (6741-6651) |
|
130-230, gnl|mm7|chr8 (69133023-69132933) |
|
130-230, gnl|Mm7|chr8 (69132916-69133016) |
|
130-230, gnl|monDom2|scaffold_987 (1316-1227) |
|
130-230, gnl|oryCun1|scaffold_215417 (105033-105114) |
|
130-230, gnl|rheMac2|chr19 (17903863-17903953) |
|
130-230, gnl|rn3|chr16 (19261970-19262060) |
|
130-230, gnl|tetNig1|chr1 (14867029-14867114) |
|
130-230, gnl|xenTro1|scaffold_296 (1082763-1082674) |
| |
|
412-1050, gnl|bosTau2|chr19 (51036999-51037634) |
|
412-1050, gnl|Hg17|chr19 (18279367-18278724) |
| |
|
804-950, gnl|bosTau2|chr10 (30921580-30921724) |
|
804-950, gnl|Hg17|chr19 (18278974-18278831) |
|
eje (0.494169) |
|
nlu (0.383362) |
|
cly (0.361925) |
|
med (0.348756) |
|
mcp (0.341297) |
|
cli (0.305623) |
|
cag (0.302389) |
|
hyp (0.285673) |
|
lnt (0.284616) |
|
nca (0.273748) |
|
mas (0.210305) |
|
nbm (0.198649) |
|
jej (0.197844) |
|
col (0.195008) |
|
nep (0.183925) |
|
ill (0.175593) |
|
sin (0.174948) |
|
rec (0.17307) |
|
duo (0.172801) |
|
eye (0.170503) |
|
fhi (0.169578) |
|
nje (0.16592) |
|
csp (0.161186) |
|
mga (0.160205) |
|
eli (0.151814) |
|
lun (0.150489) |
|
pty (0.142714) |
|
hlv (0.139256) |
|
pla (0.133672) |
|
ute (0.132784) |
|
eep (0.122564) |
|
eru (0.120048) |
|
cty (0.10408) |
|
eje (0.494169) |
|
nlu (0.383362) |
|
cly (0.361925) |
|
med (0.348756) |
|
mcp (0.341297) |
|
cli (0.305623) |
|
cag (0.302389) |
|
hyp (0.285673) |
|
lnt (0.284616) |
|
nca (0.273748) |
|
mas (0.210305) |
|
nbm (0.198649) |
|
jej (0.197844) |
|
col (0.195008) |
|
nep (0.183925) |
|
ill (0.175593) |
|
sin (0.174948) |
|
rec (0.17307) |
|
duo (0.172801) |
|
eye (0.170503) |
|
fhi (0.169578) |
|
nje (0.16592) |
|
csp (0.161186) |
|
mga (0.160205) |
|
eli (0.151814) |
|
lun (0.150489) |
|
pty (0.142714) |
|
hlv (0.139256) |
|
pla (0.133672) |
|
ute (0.132784) |
|
eep (0.122564) |
|
eru (0.120048) |
|
cty (0.10408) |
