Non-Coding RNA Search

Ss1.1-Pig4-TMW8037B17.3

Sequence:


               
               GTAACGTGGAAGATGAACGTCCCTAGTCTCCTCTTGGCGGGAGGGAGGTGGAGATGTTGT
CCAGTTCCATTAGGGTCATTCTTTTTCCAGGCCCTACATAATTCTTGCTGTCGGAAAAAA
TCCACTGCACCAAAGAAAATTATTCCCTATGTCGATTTTTTTGATGAAAATACAAAGGAA
TCTGAAAAGGCACTTGACAAGCTCTTCTCTTCAGAACAGCAGGCTTCCATCTTGCACGTG
TTGAACACAGCATCTAATAAAGAACTTGAAGCTTTCAGACTGCTTCGTGGAAGAAAATCC
ATCAATATTGTAGAGCACAGAGAAAAGTTTGGGCCATTTCAGAACTTGGAGAGTTTAATG
CATGTGCCCTTGTTCCAGTATAAAACCACCGTTCAAGTTTGTAACTCCATTCTTAATCCA
CAGACTGGAGGGAAGAAAAAGTCACAGGAAAACCGGCTCTTGAGAAAGCTCATCAAACCA
GAAATAGGAAGAGAGAGACTTCAGGCAGTTAAGAGTATCGTATCCATTGTTTCTGGTACT
CGAAGAATTGCATGGGCTCACCTGGATCGTAAACTGGCAGTGCTGGACTGGCAGCAAAGT
GAATGTTGCCGATTGGTGAAAGGAACGTACCTATCATCTGTTTATTTAGAAGAGATTTCT
TCTGTCATTTCAAAGATGCCTAAAGCTGACCTCTATGTTCTGGAAAAAACAGGACCGTCA
TTTCAGAACTCATCTCTGTTTCCTATCCTGTTACATTTTCATATCATGGAAGCCATGCTG
TTTGCCTTACTGAATAAAACGTTTGCCCAGGATGGCCATCACCAGGTGCTGAGCATGAAT
CGAAATGCAGTGGGGAAGCACTTTGAACTGATGATTGGTGATACACGGACTAGTGGGAAA
GAGGTAGTGAAGCAGCTCCTCTCAGAGTCGGTGCTGAAAGAAGAGCCTCGGGTTTTCTTC
CCACCGGACAAGATCGTCCGCTACAGACAGCTCTTTTCATCTACTGAGCAAAAGAGAGTA
GAAGAGTTGTATGATTCATTACTACAAGCGATAGCCTTCTATGAATTAGCAGTTTTTAAA
ACTGAATCTTAAAATTCTGAGGTTTGTATGTTACATTTTCAAATATTGTATTTATTAGCT
CCGCAGTTGTAAAGCCAACTGTTTGAACATCCGTGTGAATGGAGAAGAAAACTTAAGTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTAACGTGGAAGATGAACGTCCCTAGTCTCCTCTTGGCGGGAGGGAGGTGGAGATGTTGT
CCAGTTCCATTAGGGTCATTCTTTTTCCAGGCCCTACATAATTCTTGCTGTCGGAAAAAA
TCCACTGCACCAAAGAAAATTATTCCCTATGTCGATTTTTTTGATGAAAATACAAAGGAA
TCTGAAAAGGCACTTGACAAGCTCTTCTCTTCAGAACAGCAGGCTTCCATCTTGCACGTG
TTGAACACAGCATCTAATAAAGAACTTGAAGCTTTCAGACTGCTTCGTGGAAGAAAATCC
ATCAATATTGTAGAGCACAGAGAAAAGTTTGGGCCATTTCAGAACTTGGAGAGTTTAATG
CATGTGCCCTTGTTCCAGTATAAAACCACCGTTCAAGTTTGTAACTCCATTCTTAATCCA
CAGACTGGAGGGAAGAAAAAGTCACAGGAAAACCGGCTCTTGAGAAAGCTCATCAAACCA
GAAATAGGAAGAGAGAGACTTCAGGCAGTTAAGAGTATCGTATCCATTGTTTCTGGTACT
CGAAGAATTGCATGGGCTCACCTGGATCGTAAACTGGCAGTGCTGGACTGGCAGCAAAGT
GAATGTTGCCGATTGGTGAAAGGAACGTACCTATCATCTGTTTATTTAGAAGAGATTTCT
TCTGTCATTTCAAAGATGCCTAAAGCTGACCTCTATGTTCTGGAAAAAACAGGACCGTCA
TTTCAGAACTCATCTCTGTTTCCTATCCTGTTACATTTTCATATCATGGAAGCCATGCTG
TTTGCCTTACTGAATAAAACGTTTGCCCAGGATGGCCATCACCAGGTGCTGAGCATGAAT
CGAAATGCAGTGGGGAAGCACTTTGAACTGATGATTGGTGATACACGGACTAGTGGGAAA
GAGGTAGTGAAGCAGCTCCTCTCAGAGTCGGTGCTGAAAGAAGAGCCTCGGGTTTTCTTC
CCACCGGACAAGATCGTCCGCTACAGACAGCTCTTTTCATCTACTGAGCAAAAGAGAGTA
GAAGAGTTGTATGATTCATTACTACAAGCGATAGCCTTCTATGAATTAGCAGTTTTTAAA
ACTGAATCTTAAAATTCTGAGGTTTGTATGTTACATTTTCAAATATTGTATTTATTAGCT
CCGCAGTTGTAAAGCCAACTGTTTGAACATCCGTGTGAATGGAGAAGAAAACTTAAGTTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61873106|ref|XP_608770.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61873106|ref|XP_608770.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               2-121, + strand, RNAz p=0.662008

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-121, + strand, RNAz p=0.662008

Aligned organism(s): 1 entry(ies)

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Aligned organism(s): 1 entry(ies)

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               2-189, gnl|bosTau2|chr15 (25555483-25555296)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-189, gnl|bosTau2|chr15 (25555483-25555296)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               vin (0.665115)
               

               
               sme (0.305437)
               

               
               spl (0.286369)
               

               
               cli (0.152812)
               

               
               isp (0.150376)
               

               
               lin (0.145603)
               

               
               ste (0.135208)
               

               
               ldo (0.0970026)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (0.665115)
               

               
               sme (0.305437)
               

               
               spl (0.286369)
               

               
               cli (0.152812)
               

               
               isp (0.150376)
               

               
               lin (0.145603)
               

               
               ste (0.135208)
               

               
               ldo (0.0970026)

	vin (0.665115)
	sme (0.305437)
	spl (0.286369)
	cli (0.152812)
	isp (0.150376)
	lin (0.145603)
	ste (0.135208)
	ldo (0.0970026)