Non-Coding RNA Search

Ss1.1-Pig4-TMW8037B18.3

Sequence:


               
               GAGCTGACCCTGCGAAGGGCAGTGTTGGCTCCGCAGCGCTGCGGAGACCTCCACCTAGGA
CGGTTTCCCCTCCCCGGGCCTCTCCCCTCTTTCCCGCGATTCTCCTCGCCTCGTAGGCTT
CTCGGATCTAATATCGTGGGGTGAGGTGAGAGCAGGCCCGGGGAGGGTGGTTACCGCTGA
GGAGCTGCAGTCGCGATCAAGATGATAGAAGTACCAACAACAACTGACTCTCAGAAACTG
CTACACCAGCTGAATGCCCTGTTGGAACAGGAGTCGAGATGTCAGCCAAAGGTCTGCGGC
TTGAGACTAATTGAGTCTGCACACGATAATGGCCTTAGGATGACTGCAAGACTGAGGGAC
TTTGAAGTAAAAGATCTTCTTAGTTTAACTCAGTTCTTTGGCTTTGACACCGAGACATTT
TCTCTAGCTGTGAATTTACTGGACAGATTCCTGTCCAAAATGAAGGTACAGCCCAAGCAC
CTTGGGTGTGTTGGACTGAGCTGCTTCTATTTGGCTGTAAAATCATTAGAGGAGGAAAGG
AATGTCCCACTGGCAACTGATTTGATCCGAATAAGCCAGTATAGATTCACGGTTTCAGAC
TTGATGAGAATGGAAAAGATTGTGTTGGAGAAGGTGTGTTGGAAAGTCAAAGCTACTACT
GCCTTTCAATTTCTACAACTCTATTATTCACTCCTTCAAGAGAGCTTGCCATATGAAAGG
AGGAACAGCCTTAATTTTGAAAGACTGGAAGCTCAACTTAAGGCATGCTACTGCAGGATC
ATATTTTCTAAAGCAAAGCCGTCTGTGTTGGCATTGTCTATCATTGCATTGGAGATCCAA
GCACTGAAGTGTGTAGAGTTAGCAGAAGGAGCAGAATGTCTTCAGAAACATTCCAAGATA
AATGGCAGAGATTTGACTTTCTGGCAAGAGCTTGTATCCAAGTGTTTAACTGAATATTCA
TCAAACAAGTGTTCCAAACCAAATGTTCAGAAGTTGAAATGGATTGTTTCTGGGCGTACT
GCACGGCAACTGAAGCACAGTTACTACAGAATAACTCACCTTCCAACAATTCCTGAAATG
GTCCCTTAATTGGATTAATACAGCAACAACAAAACTCTTCTTTGAAGCCTTTCTCCACAA
TCCTGAGCTGTGGATTTCATCATGTTGTAATGGATTTAAGCTGTGAAGCCTCAAAACATC
ACAACTAGATTAACATTGGTGTTTTCAGATTTGGGGAAATTGCCTAATTAACATTACCCT
ATAGTGGGATTATCCACATTTGAATTCACCTGTGAAGCATACAAATCAAAGCTAACAGCA
TAAATGTGAAAAGCTAATTGACAAACCTGGGAAGTTAAACTGTGAATGTCATTTCTAACA
TTGATCCAGCTTTCTACATCGGGTCATTATATTGTATTTAGGTGGTGTTAAAAATGGTAA
CCTACTTAACTTAAAATTTAAATAATGAGGTTTACATCAAAACCAACATTTCATAAATGC
ACTTTTAAGGCATAACAAGGGTCATTATTCTAGGCAGTGAAAATAGTTTCTTGGCACCTA
TAATGCAAATAACAGATAATCCAGAGATGTGGACTTTATTGCTACATGAGAATTACATTT
AAATTTCAGGGCATTTTACATAAAGCAAACTACATACCTAGTAATTTTGGCATATTTAAT
CTTCTAGAAAACAGGTGATGTTTGTACCCATGATTAAAAAATTTTATATAAAATTGACTG
CCTCAATGCAGTCCCATCAAGAAAATTATTATAGTAGTAACTCAAAATAACATCACTCTG
AAAACTTTCTGAAAAATTTGCACTCCAGAAGTTTTTACTAGGGACTGTTTTTATAAAACC
ATCATTGCTTCTAATTTAGAATTTTGCTTAGAAAGAAGCAAAATACACTTTCACTAATTA
CCCCTACTGTGCCAAAAAAGTGTTAAGTAGACATCTTCATAATTATAAGGTTGCTGAAGT
AGTATTCAGGACGTTGGTGAATCTAAGGAGATGTGCAGTGTTAAAGTTCTATAAACAGTT
CTTCAGTGCAATGTATGGCCTGAATATATCCAGGATGGCTGTACCCAACTTGGGCATATT
ATACGTAGATATGCATTGGAAAATAAACCAAAGAGCCACAGTATATCTTATGCTTTTGTA
AACCATGTTTTATGGATAACTTTCCAGTTTGCTCAAAAGATTGATAAATTTCAATATTTT
GAATACATCAGTGTTAATTTTGAGTTGACAGAGGTAACATAACCAACTACCATTATGTTT
TGGTACTAAGGGATACCTTTCAATAAAGTTACTGAAATGCAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGCTGACCCTGCGAAGGGCAGTGTTGGCTCCGCAGCGCTGCGGAGACCTCCACCTAGGA
CGGTTTCCCCTCCCCGGGCCTCTCCCCTCTTTCCCGCGATTCTCCTCGCCTCGTAGGCTT
CTCGGATCTAATATCGTGGGGTGAGGTGAGAGCAGGCCCGGGGAGGGTGGTTACCGCTGA
GGAGCTGCAGTCGCGATCAAGATGATAGAAGTACCAACAACAACTGACTCTCAGAAACTG
CTACACCAGCTGAATGCCCTGTTGGAACAGGAGTCGAGATGTCAGCCAAAGGTCTGCGGC
TTGAGACTAATTGAGTCTGCACACGATAATGGCCTTAGGATGACTGCAAGACTGAGGGAC
TTTGAAGTAAAAGATCTTCTTAGTTTAACTCAGTTCTTTGGCTTTGACACCGAGACATTT
TCTCTAGCTGTGAATTTACTGGACAGATTCCTGTCCAAAATGAAGGTACAGCCCAAGCAC
CTTGGGTGTGTTGGACTGAGCTGCTTCTATTTGGCTGTAAAATCATTAGAGGAGGAAAGG
AATGTCCCACTGGCAACTGATTTGATCCGAATAAGCCAGTATAGATTCACGGTTTCAGAC
TTGATGAGAATGGAAAAGATTGTGTTGGAGAAGGTGTGTTGGAAAGTCAAAGCTACTACT
GCCTTTCAATTTCTACAACTCTATTATTCACTCCTTCAAGAGAGCTTGCCATATGAAAGG
AGGAACAGCCTTAATTTTGAAAGACTGGAAGCTCAACTTAAGGCATGCTACTGCAGGATC
ATATTTTCTAAAGCAAAGCCGTCTGTGTTGGCATTGTCTATCATTGCATTGGAGATCCAA
GCACTGAAGTGTGTAGAGTTAGCAGAAGGAGCAGAATGTCTTCAGAAACATTCCAAGATA
AATGGCAGAGATTTGACTTTCTGGCAAGAGCTTGTATCCAAGTGTTTAACTGAATATTCA
TCAAACAAGTGTTCCAAACCAAATGTTCAGAAGTTGAAATGGATTGTTTCTGGGCGTACT
GCACGGCAACTGAAGCACAGTTACTACAGAATAACTCACCTTCCAACAATTCCTGAAATG
GTCCCTTAATTGGATTAATACAGCAACAACAAAACTCTTCTTTGAAGCCTTTCTCCACAA
TCCTGAGCTGTGGATTTCATCATGTTGTAATGGATTTAAGCTGTGAAGCCTCAAAACATC
ACAACTAGATTAACATTGGTGTTTTCAGATTTGGGGAAATTGCCTAATTAACATTACCCT
ATAGTGGGATTATCCACATTTGAATTCACCTGTGAAGCATACAAATCAAAGCTAACAGCA
TAAATGTGAAAAGCTAATTGACAAACCTGGGAAGTTAAACTGTGAATGTCATTTCTAACA
TTGATCCAGCTTTCTACATCGGGTCATTATATTGTATTTAGGTGGTGTTAAAAATGGTAA
CCTACTTAACTTAAAATTTAAATAATGAGGTTTACATCAAAACCAACATTTCATAAATGC
ACTTTTAAGGCATAACAAGGGTCATTATTCTAGGCAGTGAAAATAGTTTCTTGGCACCTA
TAATGCAAATAACAGATAATCCAGAGATGTGGACTTTATTGCTACATGAGAATTACATTT
AAATTTCAGGGCATTTTACATAAAGCAAACTACATACCTAGTAATTTTGGCATATTTAAT
CTTCTAGAAAACAGGTGATGTTTGTACCCATGATTAAAAAATTTTATATAAAATTGACTG
CCTCAATGCAGTCCCATCAAGAAAATTATTATAGTAGTAACTCAAAATAACATCACTCTG
AAAACTTTCTGAAAAATTTGCACTCCAGAAGTTTTTACTAGGGACTGTTTTTATAAAACC
ATCATTGCTTCTAATTTAGAATTTTGCTTAGAAAGAAGCAAAATACACTTTCACTAATTA
CCCCTACTGTGCCAAAAAAGTGTTAAGTAGACATCTTCATAATTATAAGGTTGCTGAAGT
AGTATTCAGGACGTTGGTGAATCTAAGGAGATGTGCAGTGTTAAAGTTCTATAAACAGTT
CTTCAGTGCAATGTATGGCCTGAATATATCCAGGATGGCTGTACCCAACTTGGGCATATT
ATACGTAGATATGCATTGGAAAATAAACCAAAGAGCCACAGTATATCTTATGCTTTTGTA
AACCATGTTTTATGGATAACTTTCCAGTTTGCTCAAAAGATTGATAAATTTCAATATTTT
GAATACATCAGTGTTAATTTTGAGTTGACAGAGGTAACATAACCAACTACCATTATGTTT
TGGTACTAAGGGATACCTTTCAATAAAGTTACTGAAATGCAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q52QT8_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q52QT8_PIG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               2145-2259, - strand, RNAz p=0.952878

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2145-2259, - strand, RNAz p=0.952878

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-2338, gnl|bosTau2|chr19 (36470948-36473308)
               

               
               1-2338, gnl|Hg17|chr5 (162797191-162804600)
               

               
               1-2338, gnl|Mm7|chr11 (40698059-40691409)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-2338, gnl|bosTau2|chr19 (36470948-36473308)
               

               
               1-2338, gnl|Hg17|chr5 (162797191-162804600)
               

               
               1-2338, gnl|Mm7|chr11 (40698059-40691409)

Expressed library(ies): 32 entry(ies)

More info

Expressed library(ies): 32 entry(ies)

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               bfe (0.599431)
               

               
               amn (0.417711)
               

               
               aor (0.390549)
               

               
               kid (0.389206)
               

               
               ecc (0.345105)
               

               
               ldo (0.291008)
               

               
               bla (0.248694)
               

               
               jca (0.22792)
               

               
               nms (0.213858)
               

               
               fcc (0.197785)
               

               
               eje (0.197668)
               

               
               ton (0.1755)
               

               
               mcp (0.170648)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               tbr (0.154178)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               ret (0.128733)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               jej (0.0989218)

Expressed library(ies): 32 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bfe (0.599431)
               

               
               amn (0.417711)
               

               
               aor (0.390549)
               

               
               kid (0.389206)
               

               
               ecc (0.345105)
               

               
               ldo (0.291008)
               

               
               bla (0.248694)
               

               
               jca (0.22792)
               

               
               nms (0.213858)
               

               
               fcc (0.197785)
               

               
               eje (0.197668)
               

               
               ton (0.1755)
               

               
               mcp (0.170648)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               tbr (0.154178)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               ret (0.128733)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               jej (0.0989218)

	1-2338, gnl\|bosTau2\|chr19 (36470948-36473308)
	1-2338, gnl\|Hg17\|chr5 (162797191-162804600)
	1-2338, gnl\|Mm7\|chr11 (40698059-40691409)

	bfe (0.599431)
	amn (0.417711)
	aor (0.390549)
	kid (0.389206)
	ecc (0.345105)
	ldo (0.291008)
	bla (0.248694)
	jca (0.22792)
	nms (0.213858)
	fcc (0.197785)
	eje (0.197668)
	ton (0.1755)
	mcp (0.170648)
	nje (0.16592)
	nco (0.161734)
	tbr (0.154178)
	lun (0.150489)
	isp (0.150376)
	fat (0.147427)
	spl (0.143184)
	hyp (0.142837)
	lnt (0.142308)
	nca (0.136874)
	ssp (0.13552)
	pla (0.133672)
	nmm (0.132802)
	ret (0.128733)
	ese (0.126502)
	tra (0.123092)
	eep (0.122564)
	eru (0.120048)
	jej (0.0989218)