Non-Coding RNA Search

Ss1.1-Pig4-TMW8037B23.5

Sequence:


               
               TCAAGCGCATCGGGGACCTGCAGGCTGCCATTGAGGACGAAATGGAGAGCGATGAGAACG
AGGACCTTATCAACAGTGAGGGGGACTCAGACGTGGACTCGGAGCTGGAGGACCGGGTCG
ACGGGGTCAAGTCATGGTTATCAAAAAACAAGGGGCCTTCCAAGGCGGCTTCTGACGATG
GCAGCTTGAAGAGTTCCAGCCCCACCAGCTACTGGAAGTCCCTTGCCCCTGACCGGTCAG
ATGATGAGCACGACCCTCTCGACAGCACCTCCAGACCCCGATACACCCACAACTATCTGA
GTGACAGCGACACAGAGGCCAAGCAGACAGAGACCAACGCCTAGCCCAGGGAGTGATGTT
ATGCCCCTCCTACCCAGGGCCCACTGCTGCCATGGCACACGGGGCACGGGTCTCCCCCAC
CGGACTGCGGATCTGCATGGGAAACACCTGACCCTCTTCGGTCAGGACGCTTCCCAGGCT
GTGGGTATCTGACGTCTCCACATGGAAGAGGTGGAGGGAAGAGCAGAAAAGAGAACTTTC
TGCTCCTGCCTTGGGCCACCATGGGTGGCAGGTGGCTTGGCACTGCGTGGAGCCAGCATG
TTGACCTGCATCTCAGCCCCCTGCTCAGGGACGGTGGACAGATTGCCTACTGGGACATTC
TCGGGTTGCTGGGTCCACGGGGAGGCGTTTAGGGTGGGAACAGCAATTCCTTCCCCCTGG
CTTGGGGTGAGGGCTTTTTCTTCTCAGTGCCTGCTGTCTTTTTACTTTAATTTAAATACC
CAACCTCTCCATCATCAAAGCTGCACCCCTGAGAGTGGGAGGGGGCTGCGGCGGCAGCCG
GCCCTGCCTCCCCGCATGGGAGTGACTAGGGGAATCTCAACCACATCTTCACTCTTCAGA
GAACAGTCCTTTCTCTGTGCAGCTGGAGAGACCGGTGAGCAGAGCTGGGTCCAGGTTCTT
AAGAGTCCGCGCGGGGAGGGGCTCTCAGGTGCTTCTGGGTTTGGGTTGAGCAAACCTCCA
CAGACAGGGCTGCACATGTACCAGCCAGAACTTCCAGCCCCCACCCCTTTGCCTCATCAG
TGTGTTAAGTGCAATGACCTATTTAAGAGTAAACCCATCCCACCCACGCCAATTCGGGGC
TTATCCAAGCACTGCCTCCCCTCCGCCTCTGTCCAAGTTGCCTGGATCACAAGCTCAACT
TGAGAGCGAAGGCCTTGGGTTGAGGGCTTATGATCAGAAAGCCTGAGGATGGAAGTTTTG
GTCAGTAACAATGTGTATTAGACACACGAGTCCTCACCCTATGTTCTGAGACTGAGTTAT
TTTTCTTCTTCCAGTCGTCCTGCCCCACACACTTATCCTAGACACGACAACATGCGGACT
GACAGTCCCAGCCCCCACCCTCAAGGTCATCCCACCAACCCCACCAGCCTTGGGGGCCCA
AGGGCAGTGCTGCCTGGTGCCACTCTCTTCTGCTGTCCCTGCTCCCCTCCTGCAATTAGT
TTGTACTCATTGGGCTGTGCTCTCTCCCCTGTTTACCTGATGTATAGAAATAAATGTCCT
TTTCCTCCTCAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCAAGCGCATCGGGGACCTGCAGGCTGCCATTGAGGACGAAATGGAGAGCGATGAGAACG
AGGACCTTATCAACAGTGAGGGGGACTCAGACGTGGACTCGGAGCTGGAGGACCGGGTCG
ACGGGGTCAAGTCATGGTTATCAAAAAACAAGGGGCCTTCCAAGGCGGCTTCTGACGATG
GCAGCTTGAAGAGTTCCAGCCCCACCAGCTACTGGAAGTCCCTTGCCCCTGACCGGTCAG
ATGATGAGCACGACCCTCTCGACAGCACCTCCAGACCCCGATACACCCACAACTATCTGA
GTGACAGCGACACAGAGGCCAAGCAGACAGAGACCAACGCCTAGCCCAGGGAGTGATGTT
ATGCCCCTCCTACCCAGGGCCCACTGCTGCCATGGCACACGGGGCACGGGTCTCCCCCAC
CGGACTGCGGATCTGCATGGGAAACACCTGACCCTCTTCGGTCAGGACGCTTCCCAGGCT
GTGGGTATCTGACGTCTCCACATGGAAGAGGTGGAGGGAAGAGCAGAAAAGAGAACTTTC
TGCTCCTGCCTTGGGCCACCATGGGTGGCAGGTGGCTTGGCACTGCGTGGAGCCAGCATG
TTGACCTGCATCTCAGCCCCCTGCTCAGGGACGGTGGACAGATTGCCTACTGGGACATTC
TCGGGTTGCTGGGTCCACGGGGAGGCGTTTAGGGTGGGAACAGCAATTCCTTCCCCCTGG
CTTGGGGTGAGGGCTTTTTCTTCTCAGTGCCTGCTGTCTTTTTACTTTAATTTAAATACC
CAACCTCTCCATCATCAAAGCTGCACCCCTGAGAGTGGGAGGGGGCTGCGGCGGCAGCCG
GCCCTGCCTCCCCGCATGGGAGTGACTAGGGGAATCTCAACCACATCTTCACTCTTCAGA
GAACAGTCCTTTCTCTGTGCAGCTGGAGAGACCGGTGAGCAGAGCTGGGTCCAGGTTCTT
AAGAGTCCGCGCGGGGAGGGGCTCTCAGGTGCTTCTGGGTTTGGGTTGAGCAAACCTCCA
CAGACAGGGCTGCACATGTACCAGCCAGAACTTCCAGCCCCCACCCCTTTGCCTCATCAG
TGTGTTAAGTGCAATGACCTATTTAAGAGTAAACCCATCCCACCCACGCCAATTCGGGGC
TTATCCAAGCACTGCCTCCCCTCCGCCTCTGTCCAAGTTGCCTGGATCACAAGCTCAACT
TGAGAGCGAAGGCCTTGGGTTGAGGGCTTATGATCAGAAAGCCTGAGGATGGAAGTTTTG
GTCAGTAACAATGTGTATTAGACACACGAGTCCTCACCCTATGTTCTGAGACTGAGTTAT
TTTTCTTCTTCCAGTCGTCCTGCCCCACACACTTATCCTAGACACGACAACATGCGGACT
GACAGTCCCAGCCCCCACCCTCAAGGTCATCCCACCAACCCCACCAGCCTTGGGGGCCCA
AGGGCAGTGCTGCCTGGTGCCACTCTCTTCTGCTGTCCCTGCTCCCCTCCTGCAATTAGT
TTGTACTCATTGGGCTGTGCTCTCTCCCCTGTTTACCTGATGTATAGAAATAAATGTCCT
TTTCCTCCTCAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|56159911|gb|AAV80767.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|56159911|gb|AAV80767.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               395-496, - strand, RNAz p=0.680047
               

               
               698-811, - strand, RNAz p=0.566825
               

               
               1196-1315, + strand, RNAz p=0.996629

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               395-496, - strand, RNAz p=0.680047
               

               
               698-811, - strand, RNAz p=0.566825
               

               
               1196-1315, + strand, RNAz p=0.996629

Homologous human UTR: 2 entry(ies)

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Homologous human UTR: 2 entry(ies)

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               5' of AY703984, +
               

               
               3' of NM_004740, +

Homologous human UTR: 2 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AY703984, +
               

               
               3' of NM_004740, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               197-1569, gnl|bosTau2|chr19 (13978144-13976756)
               

               
               197-1569, gnl|Hg17|chr17 (24426061-24424666)
               

               
               197-1569, gnl|Mm7|chr11 (77946263-77947552)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               197-1569, gnl|bosTau2|chr19 (13978144-13976756)
               

               
               197-1569, gnl|Hg17|chr17 (24426061-24424666)
               

               
               197-1569, gnl|Mm7|chr11 (77946263-77947552)

Expressed library(ies): 14 entry(ies)

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Expressed library(ies): 14 entry(ies)

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               pty (0.285429)
               

               
               ebs (0.236602)
               

               
               ece (0.229305)
               

               
               fcc (0.197785)
               

               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               cag (0.151194)
               

               
               cst (0.140036)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               ecc (0.115035)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pty (0.285429)
               

               
               ebs (0.236602)
               

               
               ece (0.229305)
               

               
               fcc (0.197785)
               

               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               cag (0.151194)
               

               
               cst (0.140036)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               ecc (0.115035)

	395-496, - strand, RNAz p=0.680047
	698-811, - strand, RNAz p=0.566825
	1196-1315, + strand, RNAz p=0.996629

	197-1569, gnl\|bosTau2\|chr19 (13978144-13976756)
	197-1569, gnl\|Hg17\|chr17 (24426061-24424666)
	197-1569, gnl\|Mm7\|chr11 (77946263-77947552)

	pty (0.285429)
	ebs (0.236602)
	ece (0.229305)
	fcc (0.197785)
	eye (0.170503)
	nje (0.16592)
	cag (0.151194)
	cst (0.140036)
	pla (0.133672)
	ute (0.132784)
	cov (0.132153)
	ese (0.126502)
	eep (0.122564)
	ecc (0.115035)