Non-Coding RNA Search

Ss1.1-Pig4-TMW8037C01.3

Sequence:


               
               CTGTAGGAGATCCCAGGTGGCTCAGCAGATGAAGGATCCGCATTGTCACTGCTGTGGCTC
TGGTTGCTGCCGTGGCATGGGTTCAATCCCTGGCCCGGGAACTTCCACATGCCACAGGCA
TAGCCAAAAAAGAAAAAAATCTGGCACTGTAAATCCAGATGGATAAGTCATAATTTTCCT
GAATGAACTGAACTACAGCTTCCAGGGAACTGCCTGGTGGAGACTGAGCTCCGTGCTGAT
GATTTTCTCCATGAGATGGTAGCAGATCATTTAAATCACAATTACGGAACTGTCAGCAGT
CTCTACAGTGGCAGATGCCACTGTTGGAAAAATATCCTAGAAAAACCCAAACTGAGACTC
TAGGTTTTGTTAACAATCCATTTCTTTTGTATGAAACACTTCTCTAAACTGGATTTTCTG
TATCAGCGGGAAACGTATTTAGAAGGCAGGGTTTAGCCCTTCAAGAAAAAAGATGAGCTG
GGTCTCACGAGTGCTCCTGTGCTTGTATTCCGTCTGTGTACACGTGTTCTTGCGCATGTC
TAACCTGATTGACCTCTTACCTGTAACCTACCTTGCTTCCATGTGGCTTTTAATTGGCAG
TCGCTCAAGCCATTTCTAGGCAGATACGGTATTACCTTTCAGAACTCAGTGACAGGTACA
GAAACATGACCTACAGCTGAAGGACAGAACCATCCACCGTACACCAGGCTATTAGTTCCT
CCCTTTGAGGGCCTCCACGTGCACCTCGTACCCCTCCATGGCGTATACTGGGACACAGCG
CTGGCTTAAGGTTTCAGACTCAGCTCTGAAAGGTAATACTGCCTGTCGAGGAAGTGAGCC
AGCAGTGGCCTTGCAACTGTGGATCCTGAGTGCTGCTCTGAGCAGATTTCAGGTATAACC
ATTTGTTAACTGTACTGAAGGCGTGTCCTTAAGAAAGTGTTCAAATTAAAAAAGCTGCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGTAGGAGATCCCAGGTGGCTCAGCAGATGAAGGATCCGCATTGTCACTGCTGTGGCTC
TGGTTGCTGCCGTGGCATGGGTTCAATCCCTGGCCCGGGAACTTCCACATGCCACAGGCA
TAGCCAAAAAAGAAAAAAATCTGGCACTGTAAATCCAGATGGATAAGTCATAATTTTCCT
GAATGAACTGAACTACAGCTTCCAGGGAACTGCCTGGTGGAGACTGAGCTCCGTGCTGAT
GATTTTCTCCATGAGATGGTAGCAGATCATTTAAATCACAATTACGGAACTGTCAGCAGT
CTCTACAGTGGCAGATGCCACTGTTGGAAAAATATCCTAGAAAAACCCAAACTGAGACTC
TAGGTTTTGTTAACAATCCATTTCTTTTGTATGAAACACTTCTCTAAACTGGATTTTCTG
TATCAGCGGGAAACGTATTTAGAAGGCAGGGTTTAGCCCTTCAAGAAAAAAGATGAGCTG
GGTCTCACGAGTGCTCCTGTGCTTGTATTCCGTCTGTGTACACGTGTTCTTGCGCATGTC
TAACCTGATTGACCTCTTACCTGTAACCTACCTTGCTTCCATGTGGCTTTTAATTGGCAG
TCGCTCAAGCCATTTCTAGGCAGATACGGTATTACCTTTCAGAACTCAGTGACAGGTACA
GAAACATGACCTACAGCTGAAGGACAGAACCATCCACCGTACACCAGGCTATTAGTTCCT
CCCTTTGAGGGCCTCCACGTGCACCTCGTACCCCTCCATGGCGTATACTGGGACACAGCG
CTGGCTTAAGGTTTCAGACTCAGCTCTGAAAGGTAATACTGCCTGTCGAGGAAGTGAGCC
AGCAGTGGCCTTGCAACTGTGGATCCTGAGTGCTGCTCTGAGCAGATTTCAGGTATAACC
ATTTGTTAACTGTACTGAAGGCGTGTCCTTAAGAAAGTGTTCAAATTAAAAAAGCTGCTG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               789-896, + strand, RNAz p=0.567933

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               789-896, + strand, RNAz p=0.567933

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               137-960, gnl|bosTau2|chr19 (15147482-15148308)
               

               
               137-960, gnl|Hg17|chr17 (5228985-5229847)
               

               
               137-960, gnl|Mm7|chr11 (71023672-71024472)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               137-960, gnl|bosTau2|chr19 (15147482-15148308)
               

               
               137-960, gnl|Hg17|chr17 (5228985-5229847)
               

               
               137-960, gnl|Mm7|chr11 (71023672-71024472)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               nms (0.213858)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               tbr (0.154178)
               

               
               eru (0.120048)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nms (0.213858)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               tbr (0.154178)
               

               
               eru (0.120048)

	137-960, gnl\|bosTau2\|chr19 (15147482-15148308)
	137-960, gnl\|Hg17\|chr17 (5228985-5229847)
	137-960, gnl\|Mm7\|chr11 (71023672-71024472)

	nms (0.213858)
	cut (0.169924)
	fhi (0.169578)
	tbr (0.154178)
	eru (0.120048)