Non-Coding RNA Search

Ss1.1-Pig4-TMW8037C03.5

Sequence:


               
               TTTATGTAGAGCAGGATGGACCCTCGGCCTCCCTGCTGGGGCCTCTCCCCGGGGACACTT
GTGTGGGGCTGCGGGGGGACTTGGTCCACGTCCCCTCACTGAAGCATCCAGGGGGTTGAA
CTTTCATTGGCTAATCAGAGCCTATATCTTGTCCTAGTGTGTTTCATGCTTTACCAGCCA
ACTGCCTTTTTGTTTTATTTTTTAATTCTGTTGCTTATATTAACACAAACCTAGAGAGGA
ATAGTTTCTGAGACCCATTTTATTGTGAACATCCCCAAGGGAGACGTTCTGCTGTAGAGA
AAAATAGTAAGAAGCTGGCTTAGAAACAACCTTTTCCCCAGACGACTGTCTGGCTCTGAC
CAGGGCAAACCTCCAGGCAAAGTTGGAGAGGCATTTGCCAAAGATCTGCCCCGTGACGTT
GCCTGTCCAGTGTCTTTACTATGATAGTAGCCAAAGCTGCAAAGTGTTTCTCTCTTAAAT
GAAAACTCCACCAAGTTTTAAAAGTGCATTTAAAAACAGGCGTAATTTTTAGAGTGGTAC
TGCCAACCCTGGCAACTGCCATGTTGCTTTTAGAAGGTTCAATTCCTGGTGGTGCCTCTG
GAAGGCGTTTGAGATTCATCTCGATTTGTTTCCTTCGTTTCCTCTTTGTTCTTGCAACAG
ATTTCTCCCCGTGGGTGGTGTCTGAGAGGTTCAGGATACCTTGGTTTTTGTGTTAGATTG
AGCTGGGCAGCTGCAATCAGCTTTATGCAAATGAGACACGGCCCATCTAGGGGTTCCTGG
TTGGTGGCTGATGGAGTGAGGGGAGGGAAAGGTGTCACCCCAAAAGCCCCTCCCATTGGC
TTTGGCCAGGCCAGACACTTAACATCGTTTACATGGTTCTGTGTAATTATAAAGTTTATG
TGTATAAAGCGAAGCTGTTTCTGTGAAACTGTATATTTTGTAAATAAATATATTGCTACT
TTGAGGTTCATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTATGTAGAGCAGGATGGACCCTCGGCCTCCCTGCTGGGGCCTCTCCCCGGGGACACTT
GTGTGGGGCTGCGGGGGGACTTGGTCCACGTCCCCTCACTGAAGCATCCAGGGGGTTGAA
CTTTCATTGGCTAATCAGAGCCTATATCTTGTCCTAGTGTGTTTCATGCTTTACCAGCCA
ACTGCCTTTTTGTTTTATTTTTTAATTCTGTTGCTTATATTAACACAAACCTAGAGAGGA
ATAGTTTCTGAGACCCATTTTATTGTGAACATCCCCAAGGGAGACGTTCTGCTGTAGAGA
AAAATAGTAAGAAGCTGGCTTAGAAACAACCTTTTCCCCAGACGACTGTCTGGCTCTGAC
CAGGGCAAACCTCCAGGCAAAGTTGGAGAGGCATTTGCCAAAGATCTGCCCCGTGACGTT
GCCTGTCCAGTGTCTTTACTATGATAGTAGCCAAAGCTGCAAAGTGTTTCTCTCTTAAAT
GAAAACTCCACCAAGTTTTAAAAGTGCATTTAAAAACAGGCGTAATTTTTAGAGTGGTAC
TGCCAACCCTGGCAACTGCCATGTTGCTTTTAGAAGGTTCAATTCCTGGTGGTGCCTCTG
GAAGGCGTTTGAGATTCATCTCGATTTGTTTCCTTCGTTTCCTCTTTGTTCTTGCAACAG
ATTTCTCCCCGTGGGTGGTGTCTGAGAGGTTCAGGATACCTTGGTTTTTGTGTTAGATTG
AGCTGGGCAGCTGCAATCAGCTTTATGCAAATGAGACACGGCCCATCTAGGGGTTCCTGG
TTGGTGGCTGATGGAGTGAGGGGAGGGAAAGGTGTCACCCCAAAAGCCCCTCCCATTGGC
TTTGGCCAGGCCAGACACTTAACATCGTTTACATGGTTCTGTGTAATTATAAAGTTTATG
TGTATAAAGCGAAGCTGTTTCTGTGAAACTGTATATTTTGTAAATAAATATATTGCTACT
TTGAGGTTCATG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               653-883, - strand, RNAz p=0.961343

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               653-883, - strand, RNAz p=0.961343

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               800-891, + strand, RNAmicro p=0.999998

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               800-891, + strand, RNAmicro p=0.999998

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-972, gnl|bosTau2|chr16 (34579104-34578120)
               

               
               1-972, gnl|Hg17|chr1 (6617389-6618330)
               

               
               1-972, gnl|Mm7|chr4 (150980030-150979165)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-972, gnl|bosTau2|chr16 (34579104-34578120)
               

               
               1-972, gnl|Hg17|chr1 (6617389-6618330)
               

               
               1-972, gnl|Mm7|chr4 (150980030-150979165)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               nep (0.183925)
               

               
               eye (0.170503)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)
               

               
               eye (0.170503)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

	1-972, gnl\|bosTau2\|chr16 (34579104-34578120)
	1-972, gnl\|Hg17\|chr1 (6617389-6618330)
	1-972, gnl\|Mm7\|chr4 (150980030-150979165)

	nep (0.183925)
	eye (0.170503)
	cag (0.151194)
	hyp (0.142837)
	pgl (0.118483)
	ebs (0.118301)
	ecc (0.115035)