Ss1.1-Pig4-TMW8037C04.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTATTCTCAACTCCATGCACAGATACCAGCCACGCTTCCACGTGGTCTACGTGGATCCAC GCAAAGACAGTGAAAAATACGCCGAGGAGAACTTCAAAACCTTTGTGTTTGAGGAGACCC GCTTCACCGCGGTCACTGCCTACCAGAACCACCGGATCACGCAGCTCAAGATCGCCAGTA ATCCTTTCGCCAAAGGCTTCCGAGATTGCGATCCAGAGGACTGGCCCCGGAACCATCGGC CCGGCGCGCTGCCGCTCATGAGCGCCTTTGCGCGCTCGCGGAACCCCGTGGCCTCCCCCA CGCAGCCCAACGGCGCGGAGAAAGACGCAGCCGAGGCTCGGCGAGAATTCGAGCGCGACG CGGGCGGCCCGGCTGTGCTCGGGGACCCGGCGCACCCGCCGCAGCTGCTGGCGCGGGTGC TGAGCCCCGCGCTGCCCGGGGCCGGCGGCGCCGGGGCCCTGGTCCCGCTGCCTGGCGCGC CCGGAGGCCGGCCCAGCCCCCCGCACCCGGAGCTGCGCCTGGAGGCGCCCGGCGCGTCAG TGCCGCTGCACCACCACCCGTACAAGTACCCGGCGTCCGCCTACGACCACTACCTCGGGG CCAAGAGCCGGCCGGCGCCCTACCCGCTGCCAGCCCTGCGCGGCCACGGCTTCCACGCAC ATCCGCACGCGCACCCGCATCCGCACCATCACCCCGCTGTGAGCCCCGCCGCCGCCGCCG CCGCAGCGGCCGCGGCGGCCGCCAGCATGTACTCTTCAGCCGGGGGCGCGCCGCCGGGCT CCTACGACTACTGCCCCAGATAATGCGGGCGCTCGCCCAGGGGTCCGGTTCACCCAGCCC GCGGTCACCATGGTCCCTCTTCCCCGGCCTCCAAGCCTTGGGGTCTCCACTCTGCAGCCC CAGAGCTGTCCAAGGGCCTGGTTCCCTGGCCCTGGGCCACCGCGGGTTCCTCCCCAGCCC CAAGGGCCCCGAGTCCGCAACGCCAGTGCCAAAGTGCGCGGTCCGCGCCGGAAGGAAGTG ATATTTATTGTTCTCCGCGAGATCGCGTCGTCCCCGGCCCGGCTGGCAGTTGCAGTGTAG ACGATCCGAGAACCGTCTGGAGGCGGTGTAGATACTTGTAGATATTTGTAGATAACTGTA GATACCGCGCCGGCGCCGACTTGATAAACGGTTTCG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTATTCTCAACTCCATGCACAGATACCAGCCACGCTTCCACGTGGTCTACGTGGATCCAC GCAAAGACAGTGAAAAATACGCCGAGGAGAACTTCAAAACCTTTGTGTTTGAGGAGACCC GCTTCACCGCGGTCACTGCCTACCAGAACCACCGGATCACGCAGCTCAAGATCGCCAGTA ATCCTTTCGCCAAAGGCTTCCGAGATTGCGATCCAGAGGACTGGCCCCGGAACCATCGGC CCGGCGCGCTGCCGCTCATGAGCGCCTTTGCGCGCTCGCGGAACCCCGTGGCCTCCCCCA CGCAGCCCAACGGCGCGGAGAAAGACGCAGCCGAGGCTCGGCGAGAATTCGAGCGCGACG CGGGCGGCCCGGCTGTGCTCGGGGACCCGGCGCACCCGCCGCAGCTGCTGGCGCGGGTGC TGAGCCCCGCGCTGCCCGGGGCCGGCGGCGCCGGGGCCCTGGTCCCGCTGCCTGGCGCGC CCGGAGGCCGGCCCAGCCCCCCGCACCCGGAGCTGCGCCTGGAGGCGCCCGGCGCGTCAG TGCCGCTGCACCACCACCCGTACAAGTACCCGGCGTCCGCCTACGACCACTACCTCGGGG CCAAGAGCCGGCCGGCGCCCTACCCGCTGCCAGCCCTGCGCGGCCACGGCTTCCACGCAC ATCCGCACGCGCACCCGCATCCGCACCATCACCCCGCTGTGAGCCCCGCCGCCGCCGCCG CCGCAGCGGCCGCGGCGGCCGCCAGCATGTACTCTTCAGCCGGGGGCGCGCCGCCGGGCT CCTACGACTACTGCCCCAGATAATGCGGGCGCTCGCCCAGGGGTCCGGTTCACCCAGCCC GCGGTCACCATGGTCCCTCTTCCCCGGCCTCCAAGCCTTGGGGTCTCCACTCTGCAGCCC CAGAGCTGTCCAAGGGCCTGGTTCCCTGGCCCTGGGCCACCGCGGGTTCCTCCCCAGCCC CAAGGGCCCCGAGTCCGCAACGCCAGTGCCAAAGTGCGCGGTCCGCGCCGGAAGGAAGTG ATATTTATTGTTCTCCGCGAGATCGCGTCGTCCCCGGCCCGGCTGGCAGTTGCAGTGTAG ACGATCCGAGAACCGTCTGGAGGCGGTGTAGATACTTGTAGATATTTGTAGATAACTGTA GATACCGCGCCGGCGCCGACTTGATAAACGGTTTCG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 29 entry(ies) | More info |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
| 3-162, gnl|bosTau2|chr17 (45875995-45875836) | |
| 3-162, gnl|Hg17|chr22 (18127038-18127197) | |
| 3-162, gnl|Mm7|chr16 (18133304-18133145) | |
| 530-844, gnl|bosTau2|chr17 (45871899-45871581) | |
| 530-844, gnl|canFam2|chr26 (32596012-32595732) | |
| 530-844, gnl|danRer3|chr7 (18675704-18675898) | |
| 530-844, gnl|fr1|chrUn (80444612-80444793) | |
| 530-844, gnl|hg17|chr22 (18128672-18128947) | |
| 530-844, gnl|Hg17|chr22 (18128671-18129052) | |
| 530-844, gnl|loxAfr1|scaffold_72258 (382-663) | |
| 530-844, gnl|mm7|chr16 (18131990-18131725) | |
| 530-844, gnl|Mm7|chr16 (18131995-18131713) | |
| 530-844, gnl|monDom2|scaffold_272 (225611-225342) | |
| 530-844, gnl|panTro1|chr23 (18107541-18107816) | |
| 530-844, gnl|rheMac2|chr10 (63814416-63814694) | |
| 530-844, gnl|rn3|chr11 (84450683-84450948) | |
| 530-844, gnl|tetNig1|chr12 (11054153-11053972) | |
| 530-844, gnl|xenTro1|scaffold_118 (794837-795043) | |
| 950-1060, gnl|bosTau2|chr17 (45871540-45871431) | |
| 950-1060, gnl|canFam2|chr26 (32595636-32595543) | |
| 950-1060, gnl|hg17|chr22 (18129109-18129258) | |
| 950-1060, gnl|Hg17|chr22 (18129140-18129283) | |
| 950-1060, gnl|loxAfr1|scaffold_72258 (821-970) | |
| 950-1060, gnl|mm7|chr16 (18131680-18131601) | |
| 950-1060, gnl|Mm7|chr16 (18131685-18131574) | |
| 950-1060, gnl|monDom2|scaffold_272 (225192-225026) | |
| 950-1060, gnl|panTro1|chr23 (18107976-18108126) | |
| 950-1060, gnl|rheMac2|chr10 (63814861-63815011) | |
| 950-1060, gnl|rn3|chr11 (84450993-84451073) |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-162, gnl|bosTau2|chr17 (45875995-45875836) | |
| 3-162, gnl|Hg17|chr22 (18127038-18127197) | |
| 3-162, gnl|Mm7|chr16 (18133304-18133145) | |
| 530-844, gnl|bosTau2|chr17 (45871899-45871581) | |
| 530-844, gnl|canFam2|chr26 (32596012-32595732) | |
| 530-844, gnl|danRer3|chr7 (18675704-18675898) | |
| 530-844, gnl|fr1|chrUn (80444612-80444793) | |
| 530-844, gnl|hg17|chr22 (18128672-18128947) | |
| 530-844, gnl|Hg17|chr22 (18128671-18129052) | |
| 530-844, gnl|loxAfr1|scaffold_72258 (382-663) | |
| 530-844, gnl|mm7|chr16 (18131990-18131725) | |
| 530-844, gnl|Mm7|chr16 (18131995-18131713) | |
| 530-844, gnl|monDom2|scaffold_272 (225611-225342) | |
| 530-844, gnl|panTro1|chr23 (18107541-18107816) | |
| 530-844, gnl|rheMac2|chr10 (63814416-63814694) | |
| 530-844, gnl|rn3|chr11 (84450683-84450948) | |
| 530-844, gnl|tetNig1|chr12 (11054153-11053972) | |
| 530-844, gnl|xenTro1|scaffold_118 (794837-795043) | |
| 950-1060, gnl|bosTau2|chr17 (45871540-45871431) | |
| 950-1060, gnl|canFam2|chr26 (32595636-32595543) | |
| 950-1060, gnl|hg17|chr22 (18129109-18129258) | |
| 950-1060, gnl|Hg17|chr22 (18129140-18129283) | |
| 950-1060, gnl|loxAfr1|scaffold_72258 (821-970) | |
| 950-1060, gnl|mm7|chr16 (18131680-18131601) | |
| 950-1060, gnl|Mm7|chr16 (18131685-18131574) | |
| 950-1060, gnl|monDom2|scaffold_272 (225192-225026) | |
| 950-1060, gnl|panTro1|chr23 (18107976-18108126) | |
| 950-1060, gnl|rheMac2|chr10 (63814861-63815011) | |
| 950-1060, gnl|rn3|chr11 (84450993-84451073) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pty (0.142714) | |
| lnt (0.142308) | |
| nmm (0.132802) |