Ss1.1-Pig4-TMW8037C09.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGTGAAAGCTCTTTGGAACCTGCGGAGCAATGACACAGGATTGTTAGGCAATGTTGTCAA CATTCAGACGGGCCATTGGGTTGGAAAGCAGAGTGGCTTGGGTGCCGGACTGGACTCCTT CTATGAATACCTCTTGAAATCTTACATTCTCTTTGGAGAAAAAGAAGATCTAGAAATGTT TAATGCTGCATATCAGAGTATTCAGAACTACTTAAGAAGAGGTCGGGAAGCCTGTAATGA AGGAGAAGGGGACCCGCCACTCTACGTCAATGTGAACATGTTCAGTGGGCAGCTGATGAA CACATGGATTGACTCTCTGCAGGCCTTCTTCCCCGGACTGCAGGTTCTGATAGGCGATGT GGAAGATGCCATCTGCCTGCATGCCTTTTACTATGCCATATGGAAGCGCTACGGGGCCCT CCCCGAGAGGTACAACTGGCAGCTGCAGGCCCCTGACGTGCTTTTCTACCCGCTGAGACC AGAGCTGGTGGAGTCTACTTATCTCCTATACCAGGCAACCAAGAATCCGACGTGCTTTTC TACCCGCTGAGACCAGAGCTGGTGTCTGGAAAAGTACACAAAAGCCAAGTGTGGGTATGC TACATTGCATCACGTCATCGACAAATCCAAGGAGGACCGGATGGAGAGCTTCTTTCTCAG TGAGACCTGCAAATATTTGTATCTGCTCTTTGATGAGGAGAATCCAGTACACAAATCTGG AACCAGATACATGTTTACAACTGAGGGACATATTGTATCTGTGGATGAACATCTTCGGGA ATCACCCTGGAAGGAGTTCTTTTCTGAAGAGGGAGGGCAGGACCAAGTGGAAAAGTCTGT GCACAGGCCTAAATCTCACGAACTGAAAGTCATCAACTCCAGCTCCAATTGCAATCGTGT TCCTGATGAAAGGAGATACTCCTTGCCCTTAAAGAGCATCTACATGCGGCAGATTGACCA GATGGTTGGCTTGATTTGACCTGCTCTCCCCCGTGTGGCCTCATTGGAAACTGGACCTAA AACAGCTGAACATAGGCTGAGACCCAGTCTGAAGTGGAGGAGGATGGGAGCCTGGCCGTC CACGATGCTGTAGGAATTCTCTCCAGCTCCTCCCCTCAGCACGTAGATTCTTGCATTCTT TAGTGTTTCTCTTCTGTTCAATAAAACACCCTGTTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGTGAAAGCTCTTTGGAACCTGCGGAGCAATGACACAGGATTGTTAGGCAATGTTGTCAA CATTCAGACGGGCCATTGGGTTGGAAAGCAGAGTGGCTTGGGTGCCGGACTGGACTCCTT CTATGAATACCTCTTGAAATCTTACATTCTCTTTGGAGAAAAAGAAGATCTAGAAATGTT TAATGCTGCATATCAGAGTATTCAGAACTACTTAAGAAGAGGTCGGGAAGCCTGTAATGA AGGAGAAGGGGACCCGCCACTCTACGTCAATGTGAACATGTTCAGTGGGCAGCTGATGAA CACATGGATTGACTCTCTGCAGGCCTTCTTCCCCGGACTGCAGGTTCTGATAGGCGATGT GGAAGATGCCATCTGCCTGCATGCCTTTTACTATGCCATATGGAAGCGCTACGGGGCCCT CCCCGAGAGGTACAACTGGCAGCTGCAGGCCCCTGACGTGCTTTTCTACCCGCTGAGACC AGAGCTGGTGGAGTCTACTTATCTCCTATACCAGGCAACCAAGAATCCGACGTGCTTTTC TACCCGCTGAGACCAGAGCTGGTGTCTGGAAAAGTACACAAAAGCCAAGTGTGGGTATGC TACATTGCATCACGTCATCGACAAATCCAAGGAGGACCGGATGGAGAGCTTCTTTCTCAG TGAGACCTGCAAATATTTGTATCTGCTCTTTGATGAGGAGAATCCAGTACACAAATCTGG AACCAGATACATGTTTACAACTGAGGGACATATTGTATCTGTGGATGAACATCTTCGGGA ATCACCCTGGAAGGAGTTCTTTTCTGAAGAGGGAGGGCAGGACCAAGTGGAAAAGTCTGT GCACAGGCCTAAATCTCACGAACTGAAAGTCATCAACTCCAGCTCCAATTGCAATCGTGT TCCTGATGAAAGGAGATACTCCTTGCCCTTAAAGAGCATCTACATGCGGCAGATTGACCA GATGGTTGGCTTGATTTGACCTGCTCTCCCCCGTGTGGCCTCATTGGAAACTGGACCTAA AACAGCTGAACATAGGCTGAGACCCAGTCTGAAGTGGAGGAGGATGGGAGCCTGGCCGTC CACGATGCTGTAGGAATTCTCTCCAGCTCCTCCCCTCAGCACGTAGATTCTTGCATTCTT TAGTGTTTCTCTTCTGTTCAATAAAACACCCTGTTT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 58 entry(ies) | More info |
| Aligned organism(s): 58 entry(ies) | Help | Less info |
| 46-222, gnl|bosTau2|chr22 (18373060-18373236) | |
| 46-222, gnl|canFam2|chr20 (15460284-15460152) | |
| 46-222, gnl|danRer3|chr6 (27504829-27504697) | |
| 46-222, gnl|dasNov1|scaffold_1245 (75678-75793) | |
| 46-222, gnl|echTel1|scaffold_305465 (12687-12555) | |
| 46-222, gnl|fr1|chrUn (102502045-102501913) | |
| 46-222, gnl|galGal2|chr12 (18552839-18552971) | |
| 46-222, gnl|hg17|chr3 (5221744-5221876) | |
| 46-222, gnl|Hg17|chr3 (5221750-5221926) | |
| 46-222, gnl|loxAfr1|scaffold_1977 (99955-100087) | |
| 46-222, gnl|mm7|chr6 (108940702-108940834) | |
| 46-222, gnl|Mm7|chr6 (108940708-108940884) | |
| 46-222, gnl|monDom2|scaffold_5 (30914125-30914257) | |
| 46-222, gnl|panTro1|chr2_random (39694496-39694628) | |
| 46-222, gnl|rheMac2|chr2 (55835499-55835367) | |
| 46-222, gnl|rn3|chr4 (144613291-144613423) | |
| 46-222, gnl|tetNig1|chr11 (4622909-4623041) | |
| 46-222, gnl|xenTro1|scaffold_173 (1861152-1861284) | |
| 340-515, gnl|bosTau2|chr22 (18375901-18376076) | |
| 340-515, gnl|canFam2|chr20 (15457935-15457737) | |
| 340-515, gnl|danRer3|chr6 (27501929-27501732) | |
| 340-515, gnl|dasNov1|scaffold_105914 (8235-8029) | |
| 340-515, gnl|echTel1|scaffold_305465 (7619-7425) | |
| 340-515, gnl|fr1|chrUn (102501397-102501221) | |
| 340-515, gnl|galGal2|chr12 (18554054-18554248) | |
| 340-515, gnl|hg17|chr3 (5224758-5224961) | |
| 340-515, gnl|Hg17|chr3 (5224774-5224949) | |
| 340-515, gnl|loxAfr1|scaffold_1977 (104510-104712) | |
| 340-515, gnl|mm7|chr6 (108943409-108943611) | |
| 340-515, gnl|Mm7|chr6 (108943431-108943604) | |
| 340-515, gnl|monDom2|scaffold_5 (30917797-30918001) | |
| 340-515, gnl|oryCun1|scaffold_142428 (7174-7368) | |
| 340-515, gnl|panTro1|chr2_random (39697508-39697711) | |
| 340-515, gnl|rheMac2|chr2 (55832461-55832258) | |
| 340-515, gnl|rn3|chr4 (144616250-144616451) | |
| 340-515, gnl|tetNig1|chr11 (4623472-4623647) | |
| 340-515, gnl|xenTro1|scaffold_173 (1863056-1863240) | |
| 685-889, gnl|bosTau2|chr22 (18381613-18381817) | |
| 685-889, gnl|canFam2|chr20 (15452881-15452664) | |
| 685-889, gnl|danRer3|chr6 (27501354-27501165) | |
| 685-889, gnl|dasNov1|scaffold_105914 (3495-3292) | |
| 685-889, gnl|echTel1|scaffold_305465 (1401-1209) | |
| 685-889, gnl|fr1|chrUn (102500568-102500385) | |
| 685-889, gnl|galGal2|chr12 (18556619-18556789) | |
| 685-889, gnl|hg17|chr3 (5229958-5230149) | |
| 685-889, gnl|Hg17|chr3 (5230003-5230207) | |
| 685-889, gnl|loxAfr1|scaffold_31123 (2235-2425) | |
| 685-889, gnl|mm7|chr6 (108948260-108948428) | |
| 685-889, gnl|Mm7|chr6 (108948282-108948486) | |
| 685-889, gnl|monDom2|scaffold_5 (30925652-30925820) | |
| 685-889, gnl|panTro1|chr2_random (39702678-39702869) | |
| 685-889, gnl|rheMac2|chr2 (55827325-55827134) | |
| 685-889, gnl|rn3|chr4 (144622496-144622659) | |
| 685-889, gnl|tetNig1|chr11 (4624191-4624344) | |
| 685-889, gnl|xenTro1|scaffold_173 (1863821-1864004) | |
| 890-1176, gnl|bosTau2|chr22 (18384115-18384410) | |
| 890-1176, gnl|Hg17|chr3 (5232514-5232797) | |
| 890-1176, gnl|Mm7|chr6 (108949505-108949787) |
| Aligned organism(s): 58 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 46-222, gnl|bosTau2|chr22 (18373060-18373236) | |
| 46-222, gnl|canFam2|chr20 (15460284-15460152) | |
| 46-222, gnl|danRer3|chr6 (27504829-27504697) | |
| 46-222, gnl|dasNov1|scaffold_1245 (75678-75793) | |
| 46-222, gnl|echTel1|scaffold_305465 (12687-12555) | |
| 46-222, gnl|fr1|chrUn (102502045-102501913) | |
| 46-222, gnl|galGal2|chr12 (18552839-18552971) | |
| 46-222, gnl|hg17|chr3 (5221744-5221876) | |
| 46-222, gnl|Hg17|chr3 (5221750-5221926) | |
| 46-222, gnl|loxAfr1|scaffold_1977 (99955-100087) | |
| 46-222, gnl|mm7|chr6 (108940702-108940834) | |
| 46-222, gnl|Mm7|chr6 (108940708-108940884) | |
| 46-222, gnl|monDom2|scaffold_5 (30914125-30914257) | |
| 46-222, gnl|panTro1|chr2_random (39694496-39694628) | |
| 46-222, gnl|rheMac2|chr2 (55835499-55835367) | |
| 46-222, gnl|rn3|chr4 (144613291-144613423) | |
| 46-222, gnl|tetNig1|chr11 (4622909-4623041) | |
| 46-222, gnl|xenTro1|scaffold_173 (1861152-1861284) | |
| 340-515, gnl|bosTau2|chr22 (18375901-18376076) | |
| 340-515, gnl|canFam2|chr20 (15457935-15457737) | |
| 340-515, gnl|danRer3|chr6 (27501929-27501732) | |
| 340-515, gnl|dasNov1|scaffold_105914 (8235-8029) | |
| 340-515, gnl|echTel1|scaffold_305465 (7619-7425) | |
| 340-515, gnl|fr1|chrUn (102501397-102501221) | |
| 340-515, gnl|galGal2|chr12 (18554054-18554248) | |
| 340-515, gnl|hg17|chr3 (5224758-5224961) | |
| 340-515, gnl|Hg17|chr3 (5224774-5224949) | |
| 340-515, gnl|loxAfr1|scaffold_1977 (104510-104712) | |
| 340-515, gnl|mm7|chr6 (108943409-108943611) | |
| 340-515, gnl|Mm7|chr6 (108943431-108943604) | |
| 340-515, gnl|monDom2|scaffold_5 (30917797-30918001) | |
| 340-515, gnl|oryCun1|scaffold_142428 (7174-7368) | |
| 340-515, gnl|panTro1|chr2_random (39697508-39697711) | |
| 340-515, gnl|rheMac2|chr2 (55832461-55832258) | |
| 340-515, gnl|rn3|chr4 (144616250-144616451) | |
| 340-515, gnl|tetNig1|chr11 (4623472-4623647) | |
| 340-515, gnl|xenTro1|scaffold_173 (1863056-1863240) | |
| 685-889, gnl|bosTau2|chr22 (18381613-18381817) | |
| 685-889, gnl|canFam2|chr20 (15452881-15452664) | |
| 685-889, gnl|danRer3|chr6 (27501354-27501165) | |
| 685-889, gnl|dasNov1|scaffold_105914 (3495-3292) | |
| 685-889, gnl|echTel1|scaffold_305465 (1401-1209) | |
| 685-889, gnl|fr1|chrUn (102500568-102500385) | |
| 685-889, gnl|galGal2|chr12 (18556619-18556789) | |
| 685-889, gnl|hg17|chr3 (5229958-5230149) | |
| 685-889, gnl|Hg17|chr3 (5230003-5230207) | |
| 685-889, gnl|loxAfr1|scaffold_31123 (2235-2425) | |
| 685-889, gnl|mm7|chr6 (108948260-108948428) | |
| 685-889, gnl|Mm7|chr6 (108948282-108948486) | |
| 685-889, gnl|monDom2|scaffold_5 (30925652-30925820) | |
| 685-889, gnl|panTro1|chr2_random (39702678-39702869) | |
| 685-889, gnl|rheMac2|chr2 (55827325-55827134) | |
| 685-889, gnl|rn3|chr4 (144622496-144622659) | |
| 685-889, gnl|tetNig1|chr11 (4624191-4624344) | |
| 685-889, gnl|xenTro1|scaffold_173 (1863821-1864004) | |
| 890-1176, gnl|bosTau2|chr22 (18384115-18384410) | |
| 890-1176, gnl|Hg17|chr3 (5232514-5232797) | |
| 890-1176, gnl|Mm7|chr6 (108949505-108949787) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.401016) | |
| cag (0.151194) | |
| spl (0.143184) |