Ss1.1-Pig4-TMW8037C11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTCGACCTGGTGGGCGGCACGTCCATCGGCTCTTTCCCTGAGGGACTACCTAGTCAGTGA CCCCAAGTGACTCGCACTAAGCAGCGTGCCCGGGAGTGGGCCAAGAGCATGACTTCGGTG CTGGAGCCCATGCTGGACCTCACCTACCCCGTCACCTCCATGTTCACGGGGTCAGCCTTC AACCGCAGTGTCCACCGGGTCTTCCAGGACAAGCAAATCGAGGATCTGTGGCTGCCATAC TTCAACGTCACCACAGACATCACCTCCTCAGCCATGCGTGTCCACAAAGATGGCTCCTTG TGGCGATACGTGCGTGCCAGCATGACCCTCTCAGGCTACCTGCCGCCACTGTGCGACCCC AAGGACGGGCACCTCCTCATGGACGGCGGCTACATCAACAACCTGCCAGCGGACATTGCC CGCAGCATGGGTGCCAAGACAGTCATCGCCATTGACGTGGGGAGCCAGGATGAAACAGAC CTCAGCACCTACGGGGACAGCCTGTCTGGCTGGTGGCTGCTGTGGAAGCGGCTGAACCCC TGGGCAGACAAGATCAAGGTTCCAGACATGGCTGAGATCCAGTCTCGCCTGGCCTATGTG TCCTGCGTGCGGCAGCTGGAGGTCGTGAAGTCTAGCTCCTATTGCGAGTACCTGCGCCCA CCCATTGACTGCTTCAAGACCATGGACTTCGGGAAGTTTGACCAGATCTATGATGTGGGC TACCAATACGGGAAGGCGGTCTTTGGGGGCTGGAGCCGCGGCGACATCATTGAAAAGATG CTCACGGACCAGCGATCTGCTGACCTTAATGAGAGCCGCCGTGCAGATGTACTCGCCTTC CCCAGCTCCGGCTTCACCGACTTGGCTGAGATCGTGTCCCGGATCGAGCCCCCCACCAGC TACGTTTCTGATGGCTGTGCTGATGGAGAGGAGTCGGACTGCCTGACAGAGTACGAGGAG GATGCAGGACCTGATTGCTCACGGGATGAAGGCGGCTCTCCCGAGGGCGCGAGCCCCAGC ACCGCCTCCGAGATGGAGGAGGAGAAGTCGATTTTGCGGCACCGGCGCTGTCTGCCGCAG GACCCCCCCAGCTCAGCTGCGGATGCCTGAGGACCTCGGTGGGTGGGAGGGGCTGGGGCT GAACTAGGGGTGAGTCCTGTGGAGGTGGCTCACTCACCCTCTGCCTGCTGCTATGCCTGT GACACCCCTTCTGGGTCCCCTTTGGCCCCCCCAGCCCCCAGGGCCCACACACTGAACTGC CCTGTCCCCCAAGGGAGGGTCGTGTTGCACTGATGACCTTGGTCAGTCACTCCAATAAAC CTTCCCCTCTCGGAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTCGACCTGGTGGGCGGCACGTCCATCGGCTCTTTCCCTGAGGGACTACCTAGTCAGTGA CCCCAAGTGACTCGCACTAAGCAGCGTGCCCGGGAGTGGGCCAAGAGCATGACTTCGGTG CTGGAGCCCATGCTGGACCTCACCTACCCCGTCACCTCCATGTTCACGGGGTCAGCCTTC AACCGCAGTGTCCACCGGGTCTTCCAGGACAAGCAAATCGAGGATCTGTGGCTGCCATAC TTCAACGTCACCACAGACATCACCTCCTCAGCCATGCGTGTCCACAAAGATGGCTCCTTG TGGCGATACGTGCGTGCCAGCATGACCCTCTCAGGCTACCTGCCGCCACTGTGCGACCCC AAGGACGGGCACCTCCTCATGGACGGCGGCTACATCAACAACCTGCCAGCGGACATTGCC CGCAGCATGGGTGCCAAGACAGTCATCGCCATTGACGTGGGGAGCCAGGATGAAACAGAC CTCAGCACCTACGGGGACAGCCTGTCTGGCTGGTGGCTGCTGTGGAAGCGGCTGAACCCC TGGGCAGACAAGATCAAGGTTCCAGACATGGCTGAGATCCAGTCTCGCCTGGCCTATGTG TCCTGCGTGCGGCAGCTGGAGGTCGTGAAGTCTAGCTCCTATTGCGAGTACCTGCGCCCA CCCATTGACTGCTTCAAGACCATGGACTTCGGGAAGTTTGACCAGATCTATGATGTGGGC TACCAATACGGGAAGGCGGTCTTTGGGGGCTGGAGCCGCGGCGACATCATTGAAAAGATG CTCACGGACCAGCGATCTGCTGACCTTAATGAGAGCCGCCGTGCAGATGTACTCGCCTTC CCCAGCTCCGGCTTCACCGACTTGGCTGAGATCGTGTCCCGGATCGAGCCCCCCACCAGC TACGTTTCTGATGGCTGTGCTGATGGAGAGGAGTCGGACTGCCTGACAGAGTACGAGGAG GATGCAGGACCTGATTGCTCACGGGATGAAGGCGGCTCTCCCGAGGGCGCGAGCCCCAGC ACCGCCTCCGAGATGGAGGAGGAGAAGTCGATTTTGCGGCACCGGCGCTGTCTGCCGCAG GACCCCCCCAGCTCAGCTGCGGATGCCTGAGGACCTCGGTGGGTGGGAGGGGCTGGGGCT GAACTAGGGGTGAGTCCTGTGGAGGTGGCTCACTCACCCTCTGCCTGCTGCTATGCCTGT GACACCCCTTCTGGGTCCCCTTTGGCCCCCCCAGCCCCCAGGGCCCACACACTGAACTGC CCTGTCCCCCAAGGGAGGGTCGTGTTGCACTGATGACCTTGGTCAGTCACTCCAATAAAC CTTCCCCTCTCGGAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1074-1286, - strand, RNAz p=0.970893 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1074-1286, - strand, RNAz p=0.970893 |
| Aligned organism(s): 61 entry(ies) | More info |
| Aligned organism(s): 61 entry(ies) | Help | Less info |
| 101-223, gnl|bosTau2|chr11 (85245982-85246103) | |
| 101-223, gnl|canFam2|chr9 (51608536-51608398) | |
| 101-223, gnl|danRer3|chr5 (13919674-13919548) | |
| 101-223, gnl|dasNov1|scaffold_73632 (7864-7740) | |
| 101-223, gnl|echTel1|scaffold_285845 (42065-41945) | |
| 101-223, gnl|fr1|chrUn (259922453-259922582) | |
| 101-223, gnl|galGal2|chr17 (9203480-9203601) | |
| 101-223, gnl|hg17|chr9 (137634628-137634757) | |
| 101-223, gnl|Hg17|chr9 (137634749-137634628) | |
| 101-223, gnl|loxAfr1|scaffold_168106 (464-340) | |
| 101-223, gnl|mm7|chr2 (25057429-25057300) | |
| 101-223, gnl|Mm7|chr2 (25057306-25057427) | |
| 101-223, gnl|monDom2|scaffold_1 (186551577-186551700) | |
| 101-223, gnl|oryCun1|scaffold_189307 (10819-10690) | |
| 101-223, gnl|panTro1|chr11_random (47969101-47969216) | |
| 101-223, gnl|rheMac2|chr15 (774211-774082) | |
| 101-223, gnl|rn3|chr3 (5197184-5197055) | |
| 101-223, gnl|tetNig1|chrUn_random (85152021-85151900) | |
| 101-223, gnl|xenTro1|scaffold_302 (1139166-1139290) | |
| 292-409, gnl|bosTau2|chr11 (85246881-85246998) | |
| 292-409, gnl|canFam2|chr9 (51609627-51609507) | |
| 292-409, gnl|danRer3|chr5 (13920302-13920176) | |
| 292-409, gnl|echTel1|scaffold_154301 (798-937) | |
| 292-409, gnl|fr1|chrUn (259918768-259918903) | |
| 292-409, gnl|galGal2|chr17 (9197260-9197403) | |
| 292-409, gnl|hg17|chr9 (137633688-137633824) | |
| 292-409, gnl|Hg17|chr9 (137633821-137633704) | |
| 292-409, gnl|loxAfr1|scaffold_228855 (845-983) | |
| 292-409, gnl|mm7|chr2 (25058303-25058164) | |
| 292-409, gnl|Mm7|chr2 (25058165-25058282) | |
| 292-409, gnl|monDom2|scaffold_1 (186547998-186548145) | |
| 292-409, gnl|oryCun1|scaffold_189307 (11398-11260) | |
| 292-409, gnl|panTro1|chr20 (7878258-7878138) | |
| 292-409, gnl|rheMac2|chr15 (775154-775017) | |
| 292-409, gnl|rn3|chr3 (5198073-5197934) | |
| 292-409, gnl|tetNig1|chrUn_random (85152373-85152252) | |
| 292-409, gnl|xenTro1|scaffold_302 (1137167-1137296) | |
| 557-712, gnl|bosTau2|chr11 (85247954-85248109) | |
| 557-712, gnl|canFam2|chr9 (51610790-51610606) | |
| 557-712, gnl|danRer3|chr5 (13922356-13922192) | |
| 557-712, gnl|dasNov1|scaffold_125159 (5274-5431) | |
| 557-712, gnl|echTel1|scaffold_285845 (44114-43949) | |
| 557-712, gnl|fr1|chrUn (259917074-259917240) | |
| 557-712, gnl|galGal2|chr17 (9192523-9192686) | |
| 557-712, gnl|hg17|chr9 (137632459-137632644) | |
| 557-712, gnl|Hg17|chr9 (137632622-137632467) | |
| 557-712, gnl|mm7|chr2 (25059506-25059327) | |
| 557-712, gnl|Mm7|chr2 (25059341-25059496) | |
| 557-712, gnl|monDom2|scaffold_1 (186544644-186544813) | |
| 557-712, gnl|oryCun1|scaffold_194264 (808-628) | |
| 557-712, gnl|panTro1|chr11_random (47966905-47967090) | |
| 557-712, gnl|rheMac2|chr15 (776373-776188) | |
| 557-712, gnl|rn3|chr3 (5199228-5199049) | |
| 557-712, gnl|tetNig1|chrUn_random (85152825-85152632) | |
| 557-712, gnl|xenTro1|scaffold_302 (1136624-1136789) | |
| 829-931, gnl|bosTau2|chr7 (12328464-12328575) | |
| 829-931, gnl|Hg17|chr19 (7531900-7532002) | |
| 829-931, gnl|Mm7|chr8 (3457085-3457187) | |
| 1035-1335, gnl|bosTau2|chr7 (12328911-12329212) | |
| 1035-1335, gnl|Hg17|chr19 (7532373-7532649) | |
| 1035-1335, gnl|Mm7|chr8 (3458193-3458504) |
| Aligned organism(s): 61 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 101-223, gnl|bosTau2|chr11 (85245982-85246103) | |
| 101-223, gnl|canFam2|chr9 (51608536-51608398) | |
| 101-223, gnl|danRer3|chr5 (13919674-13919548) | |
| 101-223, gnl|dasNov1|scaffold_73632 (7864-7740) | |
| 101-223, gnl|echTel1|scaffold_285845 (42065-41945) | |
| 101-223, gnl|fr1|chrUn (259922453-259922582) | |
| 101-223, gnl|galGal2|chr17 (9203480-9203601) | |
| 101-223, gnl|hg17|chr9 (137634628-137634757) | |
| 101-223, gnl|Hg17|chr9 (137634749-137634628) | |
| 101-223, gnl|loxAfr1|scaffold_168106 (464-340) | |
| 101-223, gnl|mm7|chr2 (25057429-25057300) | |
| 101-223, gnl|Mm7|chr2 (25057306-25057427) | |
| 101-223, gnl|monDom2|scaffold_1 (186551577-186551700) | |
| 101-223, gnl|oryCun1|scaffold_189307 (10819-10690) | |
| 101-223, gnl|panTro1|chr11_random (47969101-47969216) | |
| 101-223, gnl|rheMac2|chr15 (774211-774082) | |
| 101-223, gnl|rn3|chr3 (5197184-5197055) | |
| 101-223, gnl|tetNig1|chrUn_random (85152021-85151900) | |
| 101-223, gnl|xenTro1|scaffold_302 (1139166-1139290) | |
| 292-409, gnl|bosTau2|chr11 (85246881-85246998) | |
| 292-409, gnl|canFam2|chr9 (51609627-51609507) | |
| 292-409, gnl|danRer3|chr5 (13920302-13920176) | |
| 292-409, gnl|echTel1|scaffold_154301 (798-937) | |
| 292-409, gnl|fr1|chrUn (259918768-259918903) | |
| 292-409, gnl|galGal2|chr17 (9197260-9197403) | |
| 292-409, gnl|hg17|chr9 (137633688-137633824) | |
| 292-409, gnl|Hg17|chr9 (137633821-137633704) | |
| 292-409, gnl|loxAfr1|scaffold_228855 (845-983) | |
| 292-409, gnl|mm7|chr2 (25058303-25058164) | |
| 292-409, gnl|Mm7|chr2 (25058165-25058282) | |
| 292-409, gnl|monDom2|scaffold_1 (186547998-186548145) | |
| 292-409, gnl|oryCun1|scaffold_189307 (11398-11260) | |
| 292-409, gnl|panTro1|chr20 (7878258-7878138) | |
| 292-409, gnl|rheMac2|chr15 (775154-775017) | |
| 292-409, gnl|rn3|chr3 (5198073-5197934) | |
| 292-409, gnl|tetNig1|chrUn_random (85152373-85152252) | |
| 292-409, gnl|xenTro1|scaffold_302 (1137167-1137296) | |
| 557-712, gnl|bosTau2|chr11 (85247954-85248109) | |
| 557-712, gnl|canFam2|chr9 (51610790-51610606) | |
| 557-712, gnl|danRer3|chr5 (13922356-13922192) | |
| 557-712, gnl|dasNov1|scaffold_125159 (5274-5431) | |
| 557-712, gnl|echTel1|scaffold_285845 (44114-43949) | |
| 557-712, gnl|fr1|chrUn (259917074-259917240) | |
| 557-712, gnl|galGal2|chr17 (9192523-9192686) | |
| 557-712, gnl|hg17|chr9 (137632459-137632644) | |
| 557-712, gnl|Hg17|chr9 (137632622-137632467) | |
| 557-712, gnl|mm7|chr2 (25059506-25059327) | |
| 557-712, gnl|Mm7|chr2 (25059341-25059496) | |
| 557-712, gnl|monDom2|scaffold_1 (186544644-186544813) | |
| 557-712, gnl|oryCun1|scaffold_194264 (808-628) | |
| 557-712, gnl|panTro1|chr11_random (47966905-47967090) | |
| 557-712, gnl|rheMac2|chr15 (776373-776188) | |
| 557-712, gnl|rn3|chr3 (5199228-5199049) | |
| 557-712, gnl|tetNig1|chrUn_random (85152825-85152632) | |
| 557-712, gnl|xenTro1|scaffold_302 (1136624-1136789) | |
| 829-931, gnl|bosTau2|chr7 (12328464-12328575) | |
| 829-931, gnl|Hg17|chr19 (7531900-7532002) | |
| 829-931, gnl|Mm7|chr8 (3457085-3457187) | |
| 1035-1335, gnl|bosTau2|chr7 (12328911-12329212) | |
| 1035-1335, gnl|Hg17|chr19 (7532373-7532649) | |
| 1035-1335, gnl|Mm7|chr8 (3458193-3458504) |
| Expressed library(ies): 8 entry(ies) | More info |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
| fhi (0.339155) | |
| eru (0.240096) | |
| nbm (0.198649) | |
| ton (0.1755) | |
| cov (0.132153) | |
| cly (0.120642) | |
| pgl (0.118483) | |
| ebs (0.118301) |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fhi (0.339155) | |
| eru (0.240096) | |
| nbm (0.198649) | |
| ton (0.1755) | |
| cov (0.132153) | |
| cly (0.120642) | |
| pgl (0.118483) | |
| ebs (0.118301) |