Non-Coding RNA Search

Ss1.1-Pig4-TMW8037C13.3

Sequence:


               
               GCCACTGTGCAGAGCTACTTGAATAATCACTGGGTCTTCATCAACTTTTATAACACAGAC
CACTCAAGGGCTGAAGTGTTGATAACCTGCATTTCGGTGTCCAATGCCTCACAGCAGCTG
AACCACCCTGAGATGCTTGTGGCCAGGTAGTGGCCACAGTCAGAGCTTTGAAAGTCAGTA
CCAAATGAACGTGTAATTGGACACCAAAAATCAAGTGTTACTTTCATGTTTCCTCACCCA
CATCATCTCGTTTCTTCCCGCTGACTCTGTGATATCTCCACTAAGCTGACCCGTCAGGTT
TTAGCCGGATGCGTACAGACGCAGGCCAGCATCACTCTCGTTTTTTTCACACCTACTCTG
TGGAAAGGAAGGAGCCTCACTGCTGTGTTGTCGTTGTAGCACTTACTGGCTGGATTTTGC
TTTTGCCTCATCACTAACCAGAATATCTGGTCAGGGGGACTCGACTCAATCCCACTGGTC
CCCAGGACCAGACAGAGAGAGTTAATTCTGGAAAATTCAGTACTTGAATGTACCTGCCTT
ATTGTGAACCAACTTACTGCGGGGAAAGTTAGAAATGCTGGCTCCAGATCTCTTCTTCAT
TCACAGGTTATTTTGGAAAGCCTGTACATGACACTTCTTTTTGAGGTTTGTTTTTATTTC
TGAAATGTTTTTTTCTTCTTTGGCTGATTCCTGCTGAGTGGGGCCGGTTCCTCGTCAGGC
TCAGGGCAGGTGCCATTCTCAGGCATGGCCTCCTTCCATCCAGCATAGCATCTTCATCTC
TGTTCTGTCTCCTCCAAATCCAAGATGATTTTAATTAGTACAGACCTGTACAGTCGACAA
TTAAAGAGTGCTTTGTACTATTATGATTTTGATTCTTCTTCCTCTTTGCTGTCCTTTGAA
GACACTTGCTGGAAAAAGCTTTAATGCACTTAGTTTTCCTGTAGGTTTTCTATAACTCAG
ATGTAAAGGACTTTCTCTGTACAGTATATTATCCAATGCATGTTTGTTCTCTATCCTGAT
ATATTGAACACCACACAGTTGTGAACTCGTGCAGTGGGGATGTCCCACACCCAGCAGAGG
CATCTAGCCCCCTGTGTATAAGGAAAGACATTTTCCTTTGCTGTACTTGCTTGAGCAGTT
TTATTGTCTGTACATGTGAGCTGTGTGAGATAGATGTGAAAAGTTACATGAATGCAATTT
CCTGCCCATGTATACAGATCGCCATCTGTACAATGAACTGTATGTATGAAAGCAAATGTA
CTTATTTATAAATGGGTAACACTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCACTGTGCAGAGCTACTTGAATAATCACTGGGTCTTCATCAACTTTTATAACACAGAC
CACTCAAGGGCTGAAGTGTTGATAACCTGCATTTCGGTGTCCAATGCCTCACAGCAGCTG
AACCACCCTGAGATGCTTGTGGCCAGGTAGTGGCCACAGTCAGAGCTTTGAAAGTCAGTA
CCAAATGAACGTGTAATTGGACACCAAAAATCAAGTGTTACTTTCATGTTTCCTCACCCA
CATCATCTCGTTTCTTCCCGCTGACTCTGTGATATCTCCACTAAGCTGACCCGTCAGGTT
TTAGCCGGATGCGTACAGACGCAGGCCAGCATCACTCTCGTTTTTTTCACACCTACTCTG
TGGAAAGGAAGGAGCCTCACTGCTGTGTTGTCGTTGTAGCACTTACTGGCTGGATTTTGC
TTTTGCCTCATCACTAACCAGAATATCTGGTCAGGGGGACTCGACTCAATCCCACTGGTC
CCCAGGACCAGACAGAGAGAGTTAATTCTGGAAAATTCAGTACTTGAATGTACCTGCCTT
ATTGTGAACCAACTTACTGCGGGGAAAGTTAGAAATGCTGGCTCCAGATCTCTTCTTCAT
TCACAGGTTATTTTGGAAAGCCTGTACATGACACTTCTTTTTGAGGTTTGTTTTTATTTC
TGAAATGTTTTTTTCTTCTTTGGCTGATTCCTGCTGAGTGGGGCCGGTTCCTCGTCAGGC
TCAGGGCAGGTGCCATTCTCAGGCATGGCCTCCTTCCATCCAGCATAGCATCTTCATCTC
TGTTCTGTCTCCTCCAAATCCAAGATGATTTTAATTAGTACAGACCTGTACAGTCGACAA
TTAAAGAGTGCTTTGTACTATTATGATTTTGATTCTTCTTCCTCTTTGCTGTCCTTTGAA
GACACTTGCTGGAAAAAGCTTTAATGCACTTAGTTTTCCTGTAGGTTTTCTATAACTCAG
ATGTAAAGGACTTTCTCTGTACAGTATATTATCCAATGCATGTTTGTTCTCTATCCTGAT
ATATTGAACACCACACAGTTGTGAACTCGTGCAGTGGGGATGTCCCACACCCAGCAGAGG
CATCTAGCCCCCTGTGTATAAGGAAAGACATTTTCCTTTGCTGTACTTGCTTGAGCAGTT
TTATTGTCTGTACATGTGAGCTGTGTGAGATAGATGTGAAAAGTTACATGAATGCAATTT
CCTGCCCATGTATACAGATCGCCATCTGTACAATGAACTGTATGTATGAAAGCAAATGTA
CTTATTTATAAATGGGTAACACTT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               77-235, - strand, RNAz p=0.965108
               

               
               392-550, + strand, RNAz p=0.892354

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               77-235, - strand, RNAz p=0.965108
               

               
               392-550, + strand, RNAz p=0.892354

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-659, gnl|bosTau2|chr19 (40188131-40188784)
               

               
               1-659, gnl|Hg17|chr17 (58857514-58858167)
               

               
               1-659, gnl|Mm7|chr11 (106037003-106037660)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-659, gnl|bosTau2|chr19 (40188131-40188784)
               

               
               1-659, gnl|Hg17|chr17 (58857514-58858167)
               

               
               1-659, gnl|Mm7|chr11 (106037003-106037660)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               hyp (0.285673)
               

               
               csk (0.281492)
               

               
               clu (0.239292)
               

               
               fty (0.17584)
               

               
               eye (0.170503)
               

               
               lin (0.145603)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.285673)
               

               
               csk (0.281492)
               

               
               clu (0.239292)
               

               
               fty (0.17584)
               

               
               eye (0.170503)
               

               
               lin (0.145603)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

	77-235, - strand, RNAz p=0.965108
	392-550, + strand, RNAz p=0.892354

	1-659, gnl\|bosTau2\|chr19 (40188131-40188784)
	1-659, gnl\|Hg17\|chr17 (58857514-58858167)
	1-659, gnl\|Mm7\|chr11 (106037003-106037660)

	hyp (0.285673)
	csk (0.281492)
	clu (0.239292)
	fty (0.17584)
	eye (0.170503)
	lin (0.145603)
	ret (0.128733)
	sug (0.127291)
	eep (0.122564)
	ebs (0.118301)
	ecc (0.115035)