Non-Coding RNA Search

Ss1.1-Pig4-TMW8037C17.3

Sequence:


               
               TTTTCCTTTAAATTCCTTTTTTGCCTCTGTTTCCAAAGAAGTGCCAGCTCAAAACCAACG
CAGTTAGAAATTGAACAGCTCTAGGAAGCTCTGGTGAGAATAAAGCCAAGCCAGACCAAG
CAGACAAAACTCCTTTTGCAACATTTTTCCCCCAAAGAAAAACACGGATGATGTTTATTT
TTTGAGTCTCTAATTCTACCTTAAAAAAAAAAAAAAAAATCAACTGTACAAATGAACAGT
ACTCATTTTAAATCCAGCACCTGGGAAGTAATTTTATGGGCAAGACACCTTTAGGTAAAC
AGCTCATAGTTTTGTGTTGAATACAGTAAAATTATGAAGAGTGTAACAAAAGGCTTTGGT
AATTTGGTGGGTTTTTTTTTTTTTTTTATCTTTTGATGATAAAAGACAGATGATTTGGAA
AGCTTAGGAACACATCAAGCCCCAGGGAAAGAAAATGTTTGATTGGTATTAATTAAAACA
CTGCTATATTCTAATAAAATCAAATTTAACATTCTAAACTAATCCGCTTGGTATGTCAAA
GGAAAAGAAAAGTATTATCTTATTTGCATCTCTGCAATCCAAATGCATTTGCTCATTCAG
CAGAATTAATTTTTATCACCAGCCTGTTTAATCTCCTCACAGATTCAGCCAAACTTATTC
TTTCGAACTAAAAAGGATCAGGGTAGGGAATCTAGAAAGGTACGGGGAAGACCAGCGCCT
GTATTTAGTACTGGCTTTATATTTTATGATGTTTTTTTCTCTTCGTTCGATGTAATGGGG
TGTGGAGGAAAACCGTGAGTCTGCAGCGAGAATGATAAATGGATAATTTTTCCTCTTTTT
CTCCTACCTACTGGGTTATTTAGGAATTCCAGTGGCCAAATTATGTGAGTGGCATTTATT
TACATGAGTGATGTGGGACTGTTGATTATATCTCATTTATTTCTGATTTCAGAATCTGTT
TTATTACAAATCCGTAATGAAAAAAAAAGGGGGGCTCTTAAACCAGAGACCAACTGCCTT
TTCTCAATTATCTTCAACTGTAGTCCACTGAAGAGAAAGTGGGGAGGTGAATGCAAAATT
TTATTCACTGAGAACTGAGTTCTTTGTTTCCTTTTAAAGTCAAAATTGCTACAGAAAAAT
TCATACTTTCATGTGGCGAGTTTTTACGCTCTTTATTGTTCAACTCTCACAATGGATAAA
ATTGTCCCCAAATGACATCATAGCCAAAATGTTTCTCCTCTCATTAGTCTCCCATGACTA
TGATATCATATGTAAATATGGGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTCCTTTAAATTCCTTTTTTGCCTCTGTTTCCAAAGAAGTGCCAGCTCAAAACCAACG
CAGTTAGAAATTGAACAGCTCTAGGAAGCTCTGGTGAGAATAAAGCCAAGCCAGACCAAG
CAGACAAAACTCCTTTTGCAACATTTTTCCCCCAAAGAAAAACACGGATGATGTTTATTT
TTTGAGTCTCTAATTCTACCTTAAAAAAAAAAAAAAAAATCAACTGTACAAATGAACAGT
ACTCATTTTAAATCCAGCACCTGGGAAGTAATTTTATGGGCAAGACACCTTTAGGTAAAC
AGCTCATAGTTTTGTGTTGAATACAGTAAAATTATGAAGAGTGTAACAAAAGGCTTTGGT
AATTTGGTGGGTTTTTTTTTTTTTTTTATCTTTTGATGATAAAAGACAGATGATTTGGAA
AGCTTAGGAACACATCAAGCCCCAGGGAAAGAAAATGTTTGATTGGTATTAATTAAAACA
CTGCTATATTCTAATAAAATCAAATTTAACATTCTAAACTAATCCGCTTGGTATGTCAAA
GGAAAAGAAAAGTATTATCTTATTTGCATCTCTGCAATCCAAATGCATTTGCTCATTCAG
CAGAATTAATTTTTATCACCAGCCTGTTTAATCTCCTCACAGATTCAGCCAAACTTATTC
TTTCGAACTAAAAAGGATCAGGGTAGGGAATCTAGAAAGGTACGGGGAAGACCAGCGCCT
GTATTTAGTACTGGCTTTATATTTTATGATGTTTTTTTCTCTTCGTTCGATGTAATGGGG
TGTGGAGGAAAACCGTGAGTCTGCAGCGAGAATGATAAATGGATAATTTTTCCTCTTTTT
CTCCTACCTACTGGGTTATTTAGGAATTCCAGTGGCCAAATTATGTGAGTGGCATTTATT
TACATGAGTGATGTGGGACTGTTGATTATATCTCATTTATTTCTGATTTCAGAATCTGTT
TTATTACAAATCCGTAATGAAAAAAAAAGGGGGGCTCTTAAACCAGAGACCAACTGCCTT
TTCTCAATTATCTTCAACTGTAGTCCACTGAAGAGAAAGTGGGGAGGTGAATGCAAAATT
TTATTCACTGAGAACTGAGTTCTTTGTTTCCTTTTAAAGTCAAAATTGCTACAGAAAAAT
TCATACTTTCATGTGGCGAGTTTTTACGCTCTTTATTGTTCAACTCTCACAATGGATAAA
ATTGTCCCCAAATGACATCATAGCCAAAATGTTTCTCCTCTCATTAGTCTCCCATGACTA
TGATATCATATGTAAATATGGGCC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               605-723, - strand, RNAz p=0.546238

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               605-723, - strand, RNAz p=0.546238

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               1-1027, gnl|bosTau2|chr15 (20065248-20066275)
               

               
               1-1027, gnl|Hg17|chr11 (121473378-121472350)
               

               
               1-1027, gnl|Mm7|chr9 (41514834-41516109)
               


               
               1054-1284, gnl|bosTau2|chr15 (20066275-20066508)
               

               
               1054-1284, gnl|Hg17|chr11 (121472350-121472120)
               

               
               1054-1284, gnl|Mm7|chr9 (41516109-41516339)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1027, gnl|bosTau2|chr15 (20065248-20066275)
               

               
               1-1027, gnl|Hg17|chr11 (121473378-121472350)
               

               
               1-1027, gnl|Mm7|chr9 (41514834-41516109)
               


               
               1054-1284, gnl|bosTau2|chr15 (20066275-20066508)
               

               
               1054-1284, gnl|Hg17|chr11 (121472350-121472120)
               

               
               1054-1284, gnl|Mm7|chr9 (41516109-41516339)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               bla (0.124347)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bla (0.124347)

	1-1027, gnl\|bosTau2\|chr15 (20065248-20066275)
	1-1027, gnl\|Hg17\|chr11 (121473378-121472350)
	1-1027, gnl\|Mm7\|chr9 (41514834-41516109)

	1054-1284, gnl\|bosTau2\|chr15 (20066275-20066508)
	1054-1284, gnl\|Hg17\|chr11 (121472350-121472120)
	1054-1284, gnl\|Mm7\|chr9 (41516109-41516339)