Non-Coding RNA Search

Ss1.1-Pig4-TMW8037C21.5

Sequence:


               
               AATATCCTTTAGAAATGTCTCAACATAGGATTGGCTATGCTTCAAAGAGATAAAAATTAA
TGAAACTTTCAGTGGTACGTCCATATGTCTGCCAGTAATCTGTGGTCTGTCATACAGGAG
GGCTTATAAAAATGTGTTGTTTCCATGTATATATAGAAATGTTCCTATCATTTTATGTAC
TTCTCTTATACTTTCAGATATGCAGAAACTGTACCGGTTGCTTTGATCGACATATCCCGT
GTGTTTCTCTGAACTGCCCAGTACTTTACAAACTCTCTCGAGTAAATAGAGAATTATCCA
AGGCACCATATCTCCGGCAATTACTAGACCAGTTTTAAGTTGTCAATATCACAGAATTCC
AGGTGCTATTTTTTTCAGTGTTTACCACTAAACTGTTGTGCATGGTGCTTTTTCAACTTT
CATCAAGTCAAGTATGTTCATTGTCTGTCTGTTATCTGGAGACTATGAAGACTTTTATGC
TAACTGAATTAAAAATTGTACTTGTTGATCTCTGAATAGCTCATTTCTTACAATGTACAA
ATTTCTCATCCTTTCACCTTTTTAACATTGTTTTATAATGCAGGTGTCTAGAATTTGCTC
CAGTATGTGTAACATCTTGTAAATCCATTTGAGTAGATCATATTTACTTCCCTGTGGAAG
GAGCACTGAAAACCTCTTTTAAAAAAACCATTCGTGTTTTCCTTGAAATGTCTGTTATCA
AGACGTGTTAGAGATATTCATTCACTTTATAATTTTGACTGCGAAATATTTTGTAAATAC
ACTTTTTTACTTTTCAAACAACTGAGTAAAAATAATGTGCAATGAATTTTATACAAATGA
TTTTCAAGTTGTTTGGTATATATATCCTCTAGGTTTTGCTTGACTCAGAGTAGAGTTGTT
ATTTTGATCAAACTGTGCAAACAATAGTACCATGTGTAGCATTTTGAAACATTATTTTCT
AAAACCGCTGTCTTGCTTTAGCTATTAATGGGGCATTGTGAGGAACTGTGCAAAGACATT
TTTGTTACAAACCTGTGGGCCTGTTGCAATACTTTAAAAATAAAAAATTTTATTCCATTT
TTGCTTGTTTTGTATAGACATTTCTATTGCTTCTAAATATGCTTAAAATATTTTCTTTCC
TTACGTACTGTACAGTTAATCTTATTTGCCATCATCTTGAACACAAAATGTGTATTTAGA
ATATTTGTATAACTGTATAAAATAAAAAAGGAATTATGTGGTCAGTGCATTGTTTTTTAA
ACTGGAAATCATTTTGTTTTAAAAGTTAATAATGGAAACCATATTAAAATTGAATAAAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATATCCTTTAGAAATGTCTCAACATAGGATTGGCTATGCTTCAAAGAGATAAAAATTAA
TGAAACTTTCAGTGGTACGTCCATATGTCTGCCAGTAATCTGTGGTCTGTCATACAGGAG
GGCTTATAAAAATGTGTTGTTTCCATGTATATATAGAAATGTTCCTATCATTTTATGTAC
TTCTCTTATACTTTCAGATATGCAGAAACTGTACCGGTTGCTTTGATCGACATATCCCGT
GTGTTTCTCTGAACTGCCCAGTACTTTACAAACTCTCTCGAGTAAATAGAGAATTATCCA
AGGCACCATATCTCCGGCAATTACTAGACCAGTTTTAAGTTGTCAATATCACAGAATTCC
AGGTGCTATTTTTTTCAGTGTTTACCACTAAACTGTTGTGCATGGTGCTTTTTCAACTTT
CATCAAGTCAAGTATGTTCATTGTCTGTCTGTTATCTGGAGACTATGAAGACTTTTATGC
TAACTGAATTAAAAATTGTACTTGTTGATCTCTGAATAGCTCATTTCTTACAATGTACAA
ATTTCTCATCCTTTCACCTTTTTAACATTGTTTTATAATGCAGGTGTCTAGAATTTGCTC
CAGTATGTGTAACATCTTGTAAATCCATTTGAGTAGATCATATTTACTTCCCTGTGGAAG
GAGCACTGAAAACCTCTTTTAAAAAAACCATTCGTGTTTTCCTTGAAATGTCTGTTATCA
AGACGTGTTAGAGATATTCATTCACTTTATAATTTTGACTGCGAAATATTTTGTAAATAC
ACTTTTTTACTTTTCAAACAACTGAGTAAAAATAATGTGCAATGAATTTTATACAAATGA
TTTTCAAGTTGTTTGGTATATATATCCTCTAGGTTTTGCTTGACTCAGAGTAGAGTTGTT
ATTTTGATCAAACTGTGCAAACAATAGTACCATGTGTAGCATTTTGAAACATTATTTTCT
AAAACCGCTGTCTTGCTTTAGCTATTAATGGGGCATTGTGAGGAACTGTGCAAAGACATT
TTTGTTACAAACCTGTGGGCCTGTTGCAATACTTTAAAAATAAAAAATTTTATTCCATTT
TTGCTTGTTTTGTATAGACATTTCTATTGCTTCTAAATATGCTTAAAATATTTTCTTTCC
TTACGTACTGTACAGTTAATCTTATTTGCCATCATCTTGAACACAAAATGTGTATTTAGA
ATATTTGTATAACTGTATAAAATAAAAAAGGAATTATGTGGTCAGTGCATTGTTTTTTAA
ACTGGAAATCATTTTGTTTTAAAAGTTAATAATGGAAACCATATTAAAATTGAATAAAAT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               552-668, - strand, RNAz p=0.798493
               

               
               977-1131, + strand, RNAz p=0.724255

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               552-668, - strand, RNAz p=0.798493
               

               
               977-1131, + strand, RNAz p=0.724255

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_002912, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_002912, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1320, gnl|bosTau2|chr9 (20258955-20260254)
               

               
               1-1320, gnl|Hg17|chr6 (111728243-111726940)
               

               
               1-1320, gnl|Mm7|chr10 (39653686-39654999)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1320, gnl|bosTau2|chr9 (20258955-20260254)
               

               
               1-1320, gnl|Hg17|chr6 (111728243-111726940)
               

               
               1-1320, gnl|Mm7|chr10 (39653686-39654999)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               tra (0.369276)
               

               
               fco (0.314416)
               

               
               lin (0.291206)
               

               
               ece (0.229305)
               

               
               sag (0.182715)
               

               
               fbs (0.175346)
               

               
               lnt (0.142308)
               

               
               ret (0.128733)
               

               
               eru (0.120048)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tra (0.369276)
               

               
               fco (0.314416)
               

               
               lin (0.291206)
               

               
               ece (0.229305)
               

               
               sag (0.182715)
               

               
               fbs (0.175346)
               

               
               lnt (0.142308)
               

               
               ret (0.128733)
               

               
               eru (0.120048)

	552-668, - strand, RNAz p=0.798493
	977-1131, + strand, RNAz p=0.724255

	1-1320, gnl\|bosTau2\|chr9 (20258955-20260254)
	1-1320, gnl\|Hg17\|chr6 (111728243-111726940)
	1-1320, gnl\|Mm7\|chr10 (39653686-39654999)

	tra (0.369276)
	fco (0.314416)
	lin (0.291206)
	ece (0.229305)
	sag (0.182715)
	fbs (0.175346)
	lnt (0.142308)
	ret (0.128733)
	eru (0.120048)