Ss1.1-Pig4-TMW8037C22.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAAGCATCTGAAGGAGGAAAACGCCCCGATCGTAAACCGATTTGGCTACGCACAGTGCAA GAAGCTGAACATGGATCAGGTGCTGGACCAGATCCTGAGGATGCCCCCGGAGAGAAACCG CATCATATACCTTCGCCCCATGCAGCAGGTGGACACTCTGACACTGGAGCAGAAGCTGTT TAGTGGCCCCTACCCCTATCACATATGTATCATCCATGAATTCAGCAACCCTCCCAACGT CCGGAACAAGGTTCGGATTCGCAGCTGGATGGACACGATAGCAAACATCAACCAAGAGCT TATTAAGTACGAATTTTTCCCTGAGGCCACGCGCAGTGAAGATGACTTAAAGAAGTACCC CAAGTACCCCTGGGGTAGAGAAATCTATACTTTAGAAGGTGTCGTGGACGGAGCGCCCTA TTCCATGATCTCCGACTTCCCGTGGCTGAGGTCTCTGCGCGCAGCCGAACCCAACAGTTT CGCCCGATACGACTTTGAGGATGACGAAGAAAGTACCATCTACGCGCCTCGAAGGAAAGG GCAGCTGTCTGCCGACATCTGCATGGAAACGATAGGCGAGGAGATCTCGGAGATGCGCCA GATGAAGAAGGGCGTGTTCCAGCGCGTGGTGGCCGTCTTCATCCACTACTGCGATGTCAA CGGCGAGCCCGTGGAAGACGACTACATTTAGCCGGCTCTGCCCCTGAGCCCCGGGGCCGG CCAGCTGCCAGGCAGCTCCGCAGAGGCCTGGGGCCTGCAGCCGGGAGGCCCTGGCTCGGC GAGGCCTGTGGGAAATGGGTGCCGAGCATCAAAGTTGTGTACAAGGTGTGTACACAGAGG AACGACACAAAGAGCCTTGCTGAGAACCCACTGGATAGCCTATGTTGATGCCGTTTAATT TAAGAAGTCATTTAAACGAAGGCAGATAATTGGAAAGAGTTCATTTTGTCCGTTTTGTTC CAGACTTAGTTCATCGAGTGTCACTTTTTGGCTGAGCCTCCATTTACTGCAGTCTTAACA TCCCTGCCAGTCATCCCTTAAATCTGTGCCTTTTCTCCAGCAGAGCCGTCCGTCCGTCCC AGTGAACCTGTTGAAGCGTCTTTGTGTCTTGTGCTGCTTTCGTTATTATTAAAACACCAA CTAGACCCTGTAGTCAGAGGTGGCTCTATGTTTTTGTGCAAAATGGTGGTTCTTTTTCTC TTGGTATTTTGGTTGCCATATTTCTTAAAATCAAGTAAAAAGACTTATGAGTTTAAAAAA ACAAAAAAACAAAACTGAGTTTGAAGAGGAAATGGAAAAGTTTCCCAAAAAACATTTCTA GTTATTTATTTCCATATTCAATTGTGTATATGCTTTATCTTGAATATAAAAATAAAAGTT TATTAAAAACTTTAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAAGCATCTGAAGGAGGAAAACGCCCCGATCGTAAACCGATTTGGCTACGCACAGTGCAA GAAGCTGAACATGGATCAGGTGCTGGACCAGATCCTGAGGATGCCCCCGGAGAGAAACCG CATCATATACCTTCGCCCCATGCAGCAGGTGGACACTCTGACACTGGAGCAGAAGCTGTT TAGTGGCCCCTACCCCTATCACATATGTATCATCCATGAATTCAGCAACCCTCCCAACGT CCGGAACAAGGTTCGGATTCGCAGCTGGATGGACACGATAGCAAACATCAACCAAGAGCT TATTAAGTACGAATTTTTCCCTGAGGCCACGCGCAGTGAAGATGACTTAAAGAAGTACCC CAAGTACCCCTGGGGTAGAGAAATCTATACTTTAGAAGGTGTCGTGGACGGAGCGCCCTA TTCCATGATCTCCGACTTCCCGTGGCTGAGGTCTCTGCGCGCAGCCGAACCCAACAGTTT CGCCCGATACGACTTTGAGGATGACGAAGAAAGTACCATCTACGCGCCTCGAAGGAAAGG GCAGCTGTCTGCCGACATCTGCATGGAAACGATAGGCGAGGAGATCTCGGAGATGCGCCA GATGAAGAAGGGCGTGTTCCAGCGCGTGGTGGCCGTCTTCATCCACTACTGCGATGTCAA CGGCGAGCCCGTGGAAGACGACTACATTTAGCCGGCTCTGCCCCTGAGCCCCGGGGCCGG CCAGCTGCCAGGCAGCTCCGCAGAGGCCTGGGGCCTGCAGCCGGGAGGCCCTGGCTCGGC GAGGCCTGTGGGAAATGGGTGCCGAGCATCAAAGTTGTGTACAAGGTGTGTACACAGAGG AACGACACAAAGAGCCTTGCTGAGAACCCACTGGATAGCCTATGTTGATGCCGTTTAATT TAAGAAGTCATTTAAACGAAGGCAGATAATTGGAAAGAGTTCATTTTGTCCGTTTTGTTC CAGACTTAGTTCATCGAGTGTCACTTTTTGGCTGAGCCTCCATTTACTGCAGTCTTAACA TCCCTGCCAGTCATCCCTTAAATCTGTGCCTTTTCTCCAGCAGAGCCGTCCGTCCGTCCC AGTGAACCTGTTGAAGCGTCTTTGTGTCTTGTGCTGCTTTCGTTATTATTAAAACACCAA CTAGACCCTGTAGTCAGAGGTGGCTCTATGTTTTTGTGCAAAATGGTGGTTCTTTTTCTC TTGGTATTTTGGTTGCCATATTTCTTAAAATCAAGTAAAAAGACTTATGAGTTTAAAAAA ACAAAAAAACAAAACTGAGTTTGAAGAGGAAATGGAAAAGTTTCCCAAAAAACATTTCTA GTTATTTATTTCCATATTCAATTGTGTATATGCTTTATCTTGAATATAAAAATAAAAGTT TATTAAAAACTTTAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 510-628, + strand, RNAz p=0.74237 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 510-628, + strand, RNAz p=0.74237 |
| Aligned organism(s): 53 entry(ies) | More info |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
| 146-294, gnl|bosTau2|chr19 (7322399-7322251) | |
| 146-294, gnl|canFam2|chr4 (63567818-63567652) | |
| 146-294, gnl|danRer3|chr14 (63935294-63935458) | |
| 146-294, gnl|echTel1|scaffold_312629 (10700-10540) | |
| 146-294, gnl|fr1|chrUn (240069435-240069275) | |
| 146-294, gnl|galGal2|chrUn (153295178-153295351) | |
| 146-294, gnl|hg17|chr5 (147799394-147799561) | |
| 146-294, gnl|Hg17|chr5 (147799400-147799548) | |
| 146-294, gnl|loxAfr1|scaffold_6299 (34982-35142) | |
| 146-294, gnl|mm7|chr18 (62896199-62896037) | |
| 146-294, gnl|Mm7|chr18 (62896191-62896043) | |
| 146-294, gnl|monDom2|scaffold_6 (22147871-22148042) | |
| 146-294, gnl|oryCun1|scaffold_209174 (142528-142361) | |
| 146-294, gnl|panTro1|chr4 (154689037-154689204) | |
| 146-294, gnl|rheMac2|chr6 (144980665-144980832) | |
| 146-294, gnl|rn3|chr18 (58593762-58593595) | |
| 146-294, gnl|tetNig1|chr1_random (174568-174406) | |
| 146-294, gnl|xenTro1|scaffold_615 (472522-472681) | |
| 295-401, gnl|bosTau2|chr19 (7321125-7321019) | |
| 295-401, gnl|canFam2|chr4 (63567030-63566911) | |
| 295-401, gnl|danRer3|chr14 (63936192-63936303) | |
| 295-401, gnl|echTel1|scaffold_312629 (9982-9863) | |
| 295-401, gnl|fr1|chrUn (240068957-240068833) | |
| 295-401, gnl|galGal2|chrUn (153296167-153296286) | |
| 295-401, gnl|hg17|chr5 (147800170-147800289) | |
| 295-401, gnl|Hg17|chr5 (147800180-147800286) | |
| 295-401, gnl|loxAfr1|scaffold_6299 (35729-35848) | |
| 295-401, gnl|mm7|chr18 (62895492-62895373) | |
| 295-401, gnl|Mm7|chr18 (62895480-62895374) | |
| 295-401, gnl|monDom2|scaffold_6 (22150513-22150632) | |
| 295-401, gnl|oryCun1|scaffold_209174 (139156-139037) | |
| 295-401, gnl|panTro1|chr4 (154689813-154689932) | |
| 295-401, gnl|rheMac2|chr6 (144981442-144981557) | |
| 295-401, gnl|rn3|chr18 (58593084-58592965) | |
| 295-401, gnl|tetNig1|chr1_random (174038-173927) | |
| 295-401, gnl|xenTro1|scaffold_615 (473413-473532) | |
| 510-1254, gnl|bosTau2|chr19 (7319730-7318972) | |
| 510-1254, gnl|Hg17|chr5 (147801722-147802485) | |
| 510-1254, gnl|Mm7|chr18 (62894322-62893606) | |
| 1263-1393, gnl|bosTau2|chr19 (7318991-7318865) | |
| 1263-1393, gnl|canFam2|chr4 (63564417-63563778) | |
| 1263-1393, gnl|echTel1|scaffold_312629 (3536-2912) | |
| 1263-1393, gnl|galGal2|chrUn (153298164-153298817) | |
| 1263-1393, gnl|hg17|chr5 (147801923-147802554) | |
| 1263-1393, gnl|Hg17|chr5 (147802452-147802591) | |
| 1263-1393, gnl|loxAfr1|scaffold_6299 (40627-41296) | |
| 1263-1393, gnl|mm7|chr18 (62894129-62893540) | |
| 1263-1393, gnl|Mm7|chr18 (62893627-62893502) | |
| 1263-1393, gnl|monDom2|scaffold_6 (22152791-22153483) | |
| 1263-1393, gnl|oryCun1|scaffold_209174 (137987-137365) | |
| 1263-1393, gnl|panTro1|chr4 (154691568-154692197) | |
| 1263-1393, gnl|rheMac2|chr6 (144983085-144983717) | |
| 1263-1393, gnl|rn3|chr18 (58591175-58590606) |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 146-294, gnl|bosTau2|chr19 (7322399-7322251) | |
| 146-294, gnl|canFam2|chr4 (63567818-63567652) | |
| 146-294, gnl|danRer3|chr14 (63935294-63935458) | |
| 146-294, gnl|echTel1|scaffold_312629 (10700-10540) | |
| 146-294, gnl|fr1|chrUn (240069435-240069275) | |
| 146-294, gnl|galGal2|chrUn (153295178-153295351) | |
| 146-294, gnl|hg17|chr5 (147799394-147799561) | |
| 146-294, gnl|Hg17|chr5 (147799400-147799548) | |
| 146-294, gnl|loxAfr1|scaffold_6299 (34982-35142) | |
| 146-294, gnl|mm7|chr18 (62896199-62896037) | |
| 146-294, gnl|Mm7|chr18 (62896191-62896043) | |
| 146-294, gnl|monDom2|scaffold_6 (22147871-22148042) | |
| 146-294, gnl|oryCun1|scaffold_209174 (142528-142361) | |
| 146-294, gnl|panTro1|chr4 (154689037-154689204) | |
| 146-294, gnl|rheMac2|chr6 (144980665-144980832) | |
| 146-294, gnl|rn3|chr18 (58593762-58593595) | |
| 146-294, gnl|tetNig1|chr1_random (174568-174406) | |
| 146-294, gnl|xenTro1|scaffold_615 (472522-472681) | |
| 295-401, gnl|bosTau2|chr19 (7321125-7321019) | |
| 295-401, gnl|canFam2|chr4 (63567030-63566911) | |
| 295-401, gnl|danRer3|chr14 (63936192-63936303) | |
| 295-401, gnl|echTel1|scaffold_312629 (9982-9863) | |
| 295-401, gnl|fr1|chrUn (240068957-240068833) | |
| 295-401, gnl|galGal2|chrUn (153296167-153296286) | |
| 295-401, gnl|hg17|chr5 (147800170-147800289) | |
| 295-401, gnl|Hg17|chr5 (147800180-147800286) | |
| 295-401, gnl|loxAfr1|scaffold_6299 (35729-35848) | |
| 295-401, gnl|mm7|chr18 (62895492-62895373) | |
| 295-401, gnl|Mm7|chr18 (62895480-62895374) | |
| 295-401, gnl|monDom2|scaffold_6 (22150513-22150632) | |
| 295-401, gnl|oryCun1|scaffold_209174 (139156-139037) | |
| 295-401, gnl|panTro1|chr4 (154689813-154689932) | |
| 295-401, gnl|rheMac2|chr6 (144981442-144981557) | |
| 295-401, gnl|rn3|chr18 (58593084-58592965) | |
| 295-401, gnl|tetNig1|chr1_random (174038-173927) | |
| 295-401, gnl|xenTro1|scaffold_615 (473413-473532) | |
| 510-1254, gnl|bosTau2|chr19 (7319730-7318972) | |
| 510-1254, gnl|Hg17|chr5 (147801722-147802485) | |
| 510-1254, gnl|Mm7|chr18 (62894322-62893606) | |
| 1263-1393, gnl|bosTau2|chr19 (7318991-7318865) | |
| 1263-1393, gnl|canFam2|chr4 (63564417-63563778) | |
| 1263-1393, gnl|echTel1|scaffold_312629 (3536-2912) | |
| 1263-1393, gnl|galGal2|chrUn (153298164-153298817) | |
| 1263-1393, gnl|hg17|chr5 (147801923-147802554) | |
| 1263-1393, gnl|Hg17|chr5 (147802452-147802591) | |
| 1263-1393, gnl|loxAfr1|scaffold_6299 (40627-41296) | |
| 1263-1393, gnl|mm7|chr18 (62894129-62893540) | |
| 1263-1393, gnl|Mm7|chr18 (62893627-62893502) | |
| 1263-1393, gnl|monDom2|scaffold_6 (22152791-22153483) | |
| 1263-1393, gnl|oryCun1|scaffold_209174 (137987-137365) | |
| 1263-1393, gnl|panTro1|chr4 (154691568-154692197) | |
| 1263-1393, gnl|rheMac2|chr6 (144983085-144983717) | |
| 1263-1393, gnl|rn3|chr18 (58591175-58590606) |
| Expressed library(ies): 10 entry(ies) | More info |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
| amn (0.417711) | |
| fcc (0.197785) | |
| cmu (0.186393) | |
| duo (0.172801) | |
| eye (0.170503) | |
| mga (0.160205) | |
| ski (0.146735) | |
| liv (0.146284) | |
| cst (0.140036) | |
| pla (0.133672) |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| amn (0.417711) | |
| fcc (0.197785) | |
| cmu (0.186393) | |
| duo (0.172801) | |
| eye (0.170503) | |
| mga (0.160205) | |
| ski (0.146735) | |
| liv (0.146284) | |
| cst (0.140036) | |
| pla (0.133672) |