Non-Coding RNA Search

Ss1.1-Pig4-TMW8037D01.3

Sequence:


               
               AAGTTCTCCTATGACACCTTCGTGGACTACAGCATCGATGAGGAAGCCGCCTTCCAGGCC
GCCCTGGCCCTGTCTCTCTCCGAGAACTGAAGGGGCCGCGGCGCCAGCCCTCGCCTCCAG
GGACAGGGCCCACCAGCCCCCTGGGGCCCGAGCCTGCCCGGGACCGCGCCTCACGGCTGC
AGGAGGAGAGGCCGCGCCATCCCACCGCCCGGGCTCCTGCTGAGTCGCACCGACTCCTCG
GTGCTTCGGGCCGAGCAGGTGACCTCGCGGCCCGGCCGCCTAGACAGAGCGCAGCGTCTG
TCTCAAAGCCATGCCGTCCTCCCCCCGCGGAGAGGACCGCTCCGGCCGCCGGGCAGGGAG
GCGCGGAGGGGGCGTCCGGCCTCGTGCCCTCGGTACCGGCTTTTGTGATACCCAGAGGTT
CCGGCACTTTTCTACGTTACCCGCTGGGCTAACTTCTCACATTTTGTAGAAGCAGAGACA
CGGCAGTTACTCTTCATGTCGCAATACCTGTGTTTGACTAGGAACAATAGTATTTTTATG
GAACGTTTACAAAATTATATTTTTTAAAAAAATCAAAAATGAATGGTTGTGGGATCAGGG
GTTGGCAGAGGCACAGGCGGGGCAACTGCTGCTGACACAGTGAAGGCAGGGTCTCACTCT
GTGCAGGGACCGGGGTGGCTGTGTCCCCAGGTCACCTCACCATGTCCCAAGGTCCCTGTG
GCTGCTCTGTCCGTTGCCCGCGACAGGAGCAGGAAGAAATCCCAACGCCTGGCCACCTGC
GGCGGCGGCTGGGCCTGCCCCTGGCCTCCCCAGAGTGCAGGGGCCTCCTCCCACCGGATC
CTGGCCTCCGCCCCGCTATCACTGTTCCAGAGCTGACCACGGCCCGCTGCGGGCAGGGCC
ACACCCAGCGGTAGCAGAGCACAGGGGGCCCGGGCCAAAAACTGCTCATCAGCACTCTTG
TTTGGTTCATGGCATAAATTATTGCTGTCGTAAAAAAAATTAAAACATTTCAGAGCAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGTTCTCCTATGACACCTTCGTGGACTACAGCATCGATGAGGAAGCCGCCTTCCAGGCC
GCCCTGGCCCTGTCTCTCTCCGAGAACTGAAGGGGCCGCGGCGCCAGCCCTCGCCTCCAG
GGACAGGGCCCACCAGCCCCCTGGGGCCCGAGCCTGCCCGGGACCGCGCCTCACGGCTGC
AGGAGGAGAGGCCGCGCCATCCCACCGCCCGGGCTCCTGCTGAGTCGCACCGACTCCTCG
GTGCTTCGGGCCGAGCAGGTGACCTCGCGGCCCGGCCGCCTAGACAGAGCGCAGCGTCTG
TCTCAAAGCCATGCCGTCCTCCCCCCGCGGAGAGGACCGCTCCGGCCGCCGGGCAGGGAG
GCGCGGAGGGGGCGTCCGGCCTCGTGCCCTCGGTACCGGCTTTTGTGATACCCAGAGGTT
CCGGCACTTTTCTACGTTACCCGCTGGGCTAACTTCTCACATTTTGTAGAAGCAGAGACA
CGGCAGTTACTCTTCATGTCGCAATACCTGTGTTTGACTAGGAACAATAGTATTTTTATG
GAACGTTTACAAAATTATATTTTTTAAAAAAATCAAAAATGAATGGTTGTGGGATCAGGG
GTTGGCAGAGGCACAGGCGGGGCAACTGCTGCTGACACAGTGAAGGCAGGGTCTCACTCT
GTGCAGGGACCGGGGTGGCTGTGTCCCCAGGTCACCTCACCATGTCCCAAGGTCCCTGTG
GCTGCTCTGTCCGTTGCCCGCGACAGGAGCAGGAAGAAATCCCAACGCCTGGCCACCTGC
GGCGGCGGCTGGGCCTGCCCCTGGCCTCCCCAGAGTGCAGGGGCCTCCTCCCACCGGATC
CTGGCCTCCGCCCCGCTATCACTGTTCCAGAGCTGACCACGGCCCGCTGCGGGCAGGGCC
ACACCCAGCGGTAGCAGAGCACAGGGGGCCCGGGCCAAAAACTGCTCATCAGCACTCTTG
TTTGGTTCATGGCATAAATTATTGCTGTCGTAAAAAAAATTAAAACATTTCAGAGCAAAA
AAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               18-631, gnl|bosTau2|chr18 (12658783-12659436)
               

               
               18-631, gnl|Hg17|chr16 (87291548-87290801)
               

               
               18-631, gnl|Mm7|chr8 (121109255-121108519)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               18-631, gnl|bosTau2|chr18 (12658783-12659436)
               

               
               18-631, gnl|Hg17|chr16 (87291548-87290801)
               

               
               18-631, gnl|Mm7|chr8 (121109255-121108519)

Expressed library(ies): 8 entry(ies)

More info

Expressed library(ies): 8 entry(ies)

Help | Less info


               
               pla (0.267344)
               

               
               ese (0.253004)
               

               
               tes (0.207814)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               cag (0.151194)
               

               
               cov (0.132153)
               

               
               ecc (0.115035)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.267344)
               

               
               ese (0.253004)
               

               
               tes (0.207814)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               cag (0.151194)
               

               
               cov (0.132153)
               

               
               ecc (0.115035)

	18-631, gnl\|bosTau2\|chr18 (12658783-12659436)
	18-631, gnl\|Hg17\|chr16 (87291548-87290801)
	18-631, gnl\|Mm7\|chr8 (121109255-121108519)

	pla (0.267344)
	ese (0.253004)
	tes (0.207814)
	fty (0.17584)
	ill (0.175593)
	cag (0.151194)
	cov (0.132153)
	ecc (0.115035)