Ss1.1-Pig4-TMW8037D03.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAGGGGGCCGGTCCCGGGGAGGAGGTTCTGCGCAGCCCGAACCCCAGCACTTCCAGCCGA AAAAGCACAACTATTATCCCCAGCAGCCCCAACCATTACCCAGCCCAGCGGCCCCCAGGG CCGCGCTACCCCCCGTACACAACGCCCCCGCGGATGAGACGGCAGCGCTCGGCCCCTGAC CTCAAGGAGAGTGGGGCGGCGGTGTGAGTCCGCATCCTGGGCACAGAGGGCCTGGCGGGG TCCCTTGCTGGGAGGAGATGCTGCTTCCCCAGAAGCCTGGGGCAGGGAAGCCCTAGAGAC GAGAGAGAGGGTCCGAGTAGGTGATAGAGGACGTAGGGGTGACTGGGCCGGAGGCTGAGG AAGGAAGAGGGCACGGAGCTGCCAGGAGTGAACCAAAGTGGGGAGTGACGGGAAGCTGCC TCGGGCCGCCCCCTGCAGGGGGGGGTCCCACAAACGCTGCTAGGGTGGGTGGGGGGCTGG GGTGCTGCGTAGTCAGTGTTTGAGTTTCTTTTCAAGTGGGGGCAAAGTGGGGAGAACCTA AAGGGAGGTGCCCTCTCCCCCCCGCCCCGTCTGTCTGTCCGTCTGTGGTGGGTTTCTATT TCCAGGGAGGTGTGACGGGATCTTAAGTCATTCCCCTCCCCTTCCAGGCCTCCTGCTATA TTTGGGGGACCTGTCTGGTTTCTGGTTTGGCTGGGGTCCATTGAGGATGTGGGACCCCTT CAATAAAGAATAGCAAACAGAGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAGGGGGCCGGTCCCGGGGAGGAGGTTCTGCGCAGCCCGAACCCCAGCACTTCCAGCCGA AAAAGCACAACTATTATCCCCAGCAGCCCCAACCATTACCCAGCCCAGCGGCCCCCAGGG CCGCGCTACCCCCCGTACACAACGCCCCCGCGGATGAGACGGCAGCGCTCGGCCCCTGAC CTCAAGGAGAGTGGGGCGGCGGTGTGAGTCCGCATCCTGGGCACAGAGGGCCTGGCGGGG TCCCTTGCTGGGAGGAGATGCTGCTTCCCCAGAAGCCTGGGGCAGGGAAGCCCTAGAGAC GAGAGAGAGGGTCCGAGTAGGTGATAGAGGACGTAGGGGTGACTGGGCCGGAGGCTGAGG AAGGAAGAGGGCACGGAGCTGCCAGGAGTGAACCAAAGTGGGGAGTGACGGGAAGCTGCC TCGGGCCGCCCCCTGCAGGGGGGGGTCCCACAAACGCTGCTAGGGTGGGTGGGGGGCTGG GGTGCTGCGTAGTCAGTGTTTGAGTTTCTTTTCAAGTGGGGGCAAAGTGGGGAGAACCTA AAGGGAGGTGCCCTCTCCCCCCCGCCCCGTCTGTCTGTCCGTCTGTGGTGGGTTTCTATT TCCAGGGAGGTGTGACGGGATCTTAAGTCATTCCCCTCCCCTTCCAGGCCTCCTGCTATA TTTGGGGGACCTGTCTGGTTTCTGGTTTGGCTGGGGTCCATTGAGGATGTGGGACCCCTT CAATAAAGAATAGCAAACAGAGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 465-562, - strand, RNAz p=0.806861 | |
| 617-727, - strand, RNAz p=0.646065 | |
| 625-742, + strand, RNAz p=0.576651 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 465-562, - strand, RNAz p=0.806861 | |
| 617-727, - strand, RNAz p=0.646065 | |
| 625-742, + strand, RNAz p=0.576651 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_006612, + |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 453-742, gnl|bosTau2|chr19 (14895162-14895458) | |
| 453-742, gnl|canFam2|chr5 (34610752-34610380) | |
| 453-742, gnl|canFam2|chr5 (34610464-34610752) | |
| 453-742, gnl|dasNov1|scaffold_17246 (47130-47462) | |
| 453-742, gnl|dasNov1|scaffold_17246 (47408-47130) | |
| 453-742, gnl|echTel1|scaffold_219323 (2702-2349) | |
| 453-742, gnl|echTel1|scaffold_219323 (2418-2702) | |
| 453-742, gnl|hg17|chr17 (4868438-4868801) | |
| 453-742, gnl|Hg17|chr17 (4868437-4868721) | |
| 453-742, gnl|hg17|chr18 (12046110-12046408) | |
| 453-742, gnl|mm7|chr11 (70810721-70811069) | |
| 453-742, gnl|mm7|chr11 (70811011-70810721) | |
| 453-742, gnl|Mm7|chr11 (70810720-70811010) | |
| 453-742, gnl|monDom2|scaffold_66 (3359554-3359215) | |
| 453-742, gnl|monDom2|scaffold_66 (3359266-3359554) | |
| 453-742, gnl|oryCun1|scaffold_122656 (11194-11493) | |
| 453-742, gnl|oryCun1|scaffold_122656 (11435-11194) | |
| 453-742, gnl|panTro1|chr17 (1872780-1873078) | |
| 453-742, gnl|panTro1|chr19 (5203975-5204336) | |
| 453-742, gnl|rheMac2|chr16 (4824283-4824640) | |
| 453-742, gnl|rheMac2|chr16 (4824562-4824283) | |
| 453-742, gnl|rn3|chr10 (57635852-57636206) | |
| 453-742, gnl|rn3|chr10 (57636142-57635852) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 453-742, gnl|bosTau2|chr19 (14895162-14895458) | |
| 453-742, gnl|canFam2|chr5 (34610752-34610380) | |
| 453-742, gnl|canFam2|chr5 (34610464-34610752) | |
| 453-742, gnl|dasNov1|scaffold_17246 (47130-47462) | |
| 453-742, gnl|dasNov1|scaffold_17246 (47408-47130) | |
| 453-742, gnl|echTel1|scaffold_219323 (2702-2349) | |
| 453-742, gnl|echTel1|scaffold_219323 (2418-2702) | |
| 453-742, gnl|hg17|chr17 (4868438-4868801) | |
| 453-742, gnl|Hg17|chr17 (4868437-4868721) | |
| 453-742, gnl|hg17|chr18 (12046110-12046408) | |
| 453-742, gnl|mm7|chr11 (70810721-70811069) | |
| 453-742, gnl|mm7|chr11 (70811011-70810721) | |
| 453-742, gnl|Mm7|chr11 (70810720-70811010) | |
| 453-742, gnl|monDom2|scaffold_66 (3359554-3359215) | |
| 453-742, gnl|monDom2|scaffold_66 (3359266-3359554) | |
| 453-742, gnl|oryCun1|scaffold_122656 (11194-11493) | |
| 453-742, gnl|oryCun1|scaffold_122656 (11435-11194) | |
| 453-742, gnl|panTro1|chr17 (1872780-1873078) | |
| 453-742, gnl|panTro1|chr19 (5203975-5204336) | |
| 453-742, gnl|rheMac2|chr16 (4824283-4824640) | |
| 453-742, gnl|rheMac2|chr16 (4824562-4824283) | |
| 453-742, gnl|rn3|chr10 (57635852-57636206) | |
| 453-742, gnl|rn3|chr10 (57636142-57635852) |
| Expressed library(ies): 8 entry(ies) | More info |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
| eye (0.341006) | |
| nms (0.213858) | |
| ton (0.1755) | |
| mcp (0.170648) | |
| cki (0.165235) | |
| hlv (0.139256) | |
| eru (0.120048) | |
| clu (0.119646) |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eye (0.341006) | |
| nms (0.213858) | |
| ton (0.1755) | |
| mcp (0.170648) | |
| cki (0.165235) | |
| hlv (0.139256) | |
| eru (0.120048) | |
| clu (0.119646) |