Non-Coding RNA Search

Ss1.1-Pig4-TMW8037D07.3

Sequence:


               
               AACAGATGAAGACTCTTTTCAGAAGGTTAAAAACTGGGTCAAAGAATTACGGAAAATGTT
GGGAAATGAAATCTGTTTATGTATAGTTGGTAATAAGATAGACTTGGAGAAGGAGAGACA
TGTTTCCATTCAAGAAGCAGAATCGTATGCAGAATCTGTGGGAGCAAAACATTATCATAC
TTCAGCCAAACAGAACAAAGGAATTGAGGAACTCTTTCTTGACCTTTGTAAAAGGATGAT
AGAAACAGCACAAGTGGATGAGAGGGCAAAAGGCAATGGCTCCAGTCAACCAGGAGCTAC
AAGGCGAGGTGTGCAGATTATTGATGATGAACCTCAAGCCCAGAGCGGTGGCGGAGGGTG
CTGTTCTTCTGGATAACTGTTGACCCCTAAGAAATTAAACAAACTGTGGATCATTGCCCT
CAACATGAAGACTGCCATATTCCAAGTCACATTATTTTACCAATGGAATTATAGGATTAA
CAGTATTTTAAATTATGTTTATAACACTGCAGAGACCTTAAGTGCTAAACTTAGTGGAGT
TTGTGACCAGAGAATTGGCATTTTCTACAAATGTTAACAAAGCAATTACCAATGGCCTTT
TTACATATTTTTTTTCTTTAATAAGGAATAATATGCATGTAGAAAAGACCTACTTAAAGT
CTTCATTTATATTCTTTTAAATCAGATCTTTATTTAATAACTTATATATGTTGTTGGAAT
GGTATACATTTTTGCAGCCCTTTGTATTTTGTGGTAGTTTGAATTGTATCACTTCTAAAC
AGCAAACTTTTTGTTTTCATTTTTTTTTTAATTAGCAGATACCTGAAGTACTATTTTTGC
AGGGTTTGCACAGGCCCTTAACTGTCTACTACTTTGATATAATCTATATACATCCTGTAT
GCTGAGCTGGTAAAATACATTGTAAACTACATATTAAATATTTTATCTGCTTTTACAAGC
GCAAGGTGCAAAAATATATACGGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACAGATGAAGACTCTTTTCAGAAGGTTAAAAACTGGGTCAAAGAATTACGGAAAATGTT
GGGAAATGAAATCTGTTTATGTATAGTTGGTAATAAGATAGACTTGGAGAAGGAGAGACA
TGTTTCCATTCAAGAAGCAGAATCGTATGCAGAATCTGTGGGAGCAAAACATTATCATAC
TTCAGCCAAACAGAACAAAGGAATTGAGGAACTCTTTCTTGACCTTTGTAAAAGGATGAT
AGAAACAGCACAAGTGGATGAGAGGGCAAAAGGCAATGGCTCCAGTCAACCAGGAGCTAC
AAGGCGAGGTGTGCAGATTATTGATGATGAACCTCAAGCCCAGAGCGGTGGCGGAGGGTG
CTGTTCTTCTGGATAACTGTTGACCCCTAAGAAATTAAACAAACTGTGGATCATTGCCCT
CAACATGAAGACTGCCATATTCCAAGTCACATTATTTTACCAATGGAATTATAGGATTAA
CAGTATTTTAAATTATGTTTATAACACTGCAGAGACCTTAAGTGCTAAACTTAGTGGAGT
TTGTGACCAGAGAATTGGCATTTTCTACAAATGTTAACAAAGCAATTACCAATGGCCTTT
TTACATATTTTTTTTCTTTAATAAGGAATAATATGCATGTAGAAAAGACCTACTTAAAGT
CTTCATTTATATTCTTTTAAATCAGATCTTTATTTAATAACTTATATATGTTGTTGGAAT
GGTATACATTTTTGCAGCCCTTTGTATTTTGTGGTAGTTTGAATTGTATCACTTCTAAAC
AGCAAACTTTTTGTTTTCATTTTTTTTTTAATTAGCAGATACCTGAAGTACTATTTTTGC
AGGGTTTGCACAGGCCCTTAACTGTCTACTACTTTGATATAATCTATATACATCCTGTAT
GCTGAGCTGGTAAAATACATTGTAAACTACATATTAAATATTTTATCTGCTTTTACAAGC
GCAAGGTGCAAAAATATATACGGT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|576556|dbj|BAA07682.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|576556|dbj|BAA07682.1|

Aligned organism(s): 7 entry(ies)

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Aligned organism(s): 7 entry(ies)

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               1-981, gnl|bosTau2|chrX (26707290-26708277)
               

               
               1-981, gnl|Hg17|chr12 (70462064-70466651)
               

               
               1-981, gnl|Mm7|chr10 (114807781-114796398)
               


               
               89-247, gnl|bosTau2|chr21 (20896776-20896621)
               

               
               89-247, gnl|Hg17|chr12 (70462077-70462706)
               

               
               89-247, gnl|Mm7|chr10 (114801718-114801092)
               


               
               549-890, gnl|bosTau2|chr6 (46350084-46349769)

Aligned organism(s): 7 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-981, gnl|bosTau2|chrX (26707290-26708277)
               

               
               1-981, gnl|Hg17|chr12 (70462064-70466651)
               

               
               1-981, gnl|Mm7|chr10 (114807781-114796398)
               


               
               89-247, gnl|bosTau2|chr21 (20896776-20896621)
               

               
               89-247, gnl|Hg17|chr12 (70462077-70462706)
               

               
               89-247, gnl|Mm7|chr10 (114801718-114801092)
               


               
               549-890, gnl|bosTau2|chr6 (46350084-46349769)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               tes (0.415628)
               

               
               sme (0.305437)
               

               
               fat (0.294855)
               

               
               mcp (0.170648)
               

               
               lin (0.145603)
               

               
               kid (0.129735)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.415628)
               

               
               sme (0.305437)
               

               
               fat (0.294855)
               

               
               mcp (0.170648)
               

               
               lin (0.145603)
               

               
               kid (0.129735)

	1-981, gnl\|bosTau2\|chrX (26707290-26708277)
	1-981, gnl\|Hg17\|chr12 (70462064-70466651)
	1-981, gnl\|Mm7\|chr10 (114807781-114796398)

	89-247, gnl\|bosTau2\|chr21 (20896776-20896621)
	89-247, gnl\|Hg17\|chr12 (70462077-70462706)
	89-247, gnl\|Mm7\|chr10 (114801718-114801092)

	549-890, gnl\|bosTau2\|chr6 (46350084-46349769)

	tes (0.415628)
	sme (0.305437)
	fat (0.294855)
	mcp (0.170648)
	lin (0.145603)
	kid (0.129735)