Non-Coding RNA Search

Ss1.1-Pig4-TMW8037D09.3.5

Sequence:


               
               GGATTTCGAATCTTTCTCGATTTTGTTCTTAAAGTTCAGTTGTTGGGCTGTTGAGGACTG
CCTGAGAGTTGCTGCTGAGAGATTTTCAGGACTGTGTGGTTTTGGGGGGACTTTTTTTTT
TAAGGCAAAGTTGACCACTGTTCACTGCCCACGTGATCAGTTGTAAGATTACAATGCTGC
ATGCTAGTTGGTTACATAATACACAATCCAGTGACTCAAGGCAGTGATAATGACTGGTGG
TGTGTACAAGATGGCACTGCCATCTTTGAACAGAGCCTGGCTCTGCAGCGCCACTTGATC
TTTTGAAACACCCTGGAGCTCTGTCTGTTGTTGCTGTTACTGTTTCCTTTGAAAAGAGTC
TGAAGAGAAGTTACAGTCCAGGTGAACTTGGAGATTGTGGGATTGGTTTCATTTCTGTTT
TGTGTTTTGTTTTTTTTTTTGTTTTTTTTTTAAATCATTTAGTGTTATTGCCGTTGATAC
TCTAACCTCCACCCTGTTTTCTAGTGAATGCTAAATACAGTATGGTACCATGTCAGTAAC
AGCGCGTGGTGCTGCCAGCACTGCCTTGGGCACAGCAGTGACAGCCCAAATGGGGGTGGA
GGAAACCTGTAATTTCCTTCTTATATGTGTTTGAAATACCAAGTGAATAATACTGTTCTT
CTGGACAAAAATGATAAACTAGTGAAAATTAAAGAAAGGGTTTTACATAATAGGCCCCAC
CTCTCAAACTATTTTTAGAAGCCTTTTGTAAACTAATTTCTTTTGATCACTATTTTGCAT
CAGTAAAATGATTTTTAAACCAATAAATCATCGGTTATTAGAAATAGTTGTCTCACAGTG
ATACTGGTTTTTCTTTTGTGCTGTTATGATTTAACATTGACAGGAGCACTACTTTAAATC
TTTTTATGTTCAGGTGTTTGTAACTTGGCCCTATAATTAGGCTGAATCATGGCTTCAAGG
TCTACTACAACATGTGTATCGTTCACAACCTGAGATTCTATTTTAATTTGAAGATATAAA
TTGTTACCCACTTTGGATTCTTTTTCAGTTACGTTTGTCTTTTTTAAATTGCTCAAATGT
TTTTTAATGGTCGAGTTATTAACACTTGAAAATCAGATACTGCACCATATACAGTATTTT
TCATGGTGTTTTTAATGAGTGCACCTATTATTAATGCTGTGCAAATTCATGTTACCAGTC
ATTGTTATATTACAAACAGACTTGCATGATTAACCAGTTTGTTGTTACACTTTTTTTTTT
AATTGGAGTATCTCTGACTCAGATCAGACTGGTTTCTCTTATGTCAATGCACACATGCAG
AAACAGTCAATTTTACATGCCCATAAAGACATCTGTAAAGACATATTATGGTCTGTTGTA
TAAATGTGTATCTAGGCACTTTATTATAAACTGGAATTTGACCTCATAGATATAAGTTGA
TCAGTCATTTGACCTAATTTGTGGTAGCTATCTGTATGTTTGGCAATCTTAATACAGACA
AGCTTTCCAAAAAGATTAGTAAAGAACCATCCTGCTGTTTTGTATAAGTCTGTCCAGCTA
TGGAAAAGACAACCTCAGATTTCTCTGTGCTGGCGTTTAATAGGGAGAATACGAACTGCT
TTAAAGGGCTGTGTGTTGAGGTTACTCTTTTTTAAAAGTAAGAGTCCGCCTGGCCCTTGG
GTGGCCTTTGCAGAAGGCTTGCAGCTGGAGAGAGTGTTGATCTGGGTTATTTTTCTGGCA
TTCTCTTAAGTTAAAAAGTTAACACTGGGACATGGGTTTGATCCTTTTGTACCTGATGAC
AGTGCAGAGATTGTGCACAGCTGGATAAAGATGTCAGAAAGCTACTTACTGTACATGGGC
AGTATCAGACTTCAAATCCTAATATTTCAGCTGTGCTTTTAATACTCAAAATGTTAGGGG
ATGGGGTGTTGAAGCTTTCCCTTTTTTGCTTTAACAATTTATAGAATTTAACAGATGTAC
TGTCTTTCATGTGGCCTCACATTAAAAGTTATGAGAACGTACACATGGTTTACAACTTTT
ACTATATACCTTTCCTTGGCCACCAAGTATTTTAAAAGTGTGCCACCTTTTAACCTTTAC
TTTTTTTAAGTTGAAGGTGATACTTTTTCTATATATGATGAAACTCATGTCAACTGAAGT
GAGTGTAATCTCAGATATCAACATTATCCTATTTTAAAATCACGCTATGGAAATATCACC
TGCATTCTGTCATTTGTCAGATTTACAGTACCTTTTTTTTTTCTTTTAACTTTTAGCATT
AAATAAAAATAAAGTTGGGAGCACTGAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGATTTCGAATCTTTCTCGATTTTGTTCTTAAAGTTCAGTTGTTGGGCTGTTGAGGACTG
CCTGAGAGTTGCTGCTGAGAGATTTTCAGGACTGTGTGGTTTTGGGGGGACTTTTTTTTT
TAAGGCAAAGTTGACCACTGTTCACTGCCCACGTGATCAGTTGTAAGATTACAATGCTGC
ATGCTAGTTGGTTACATAATACACAATCCAGTGACTCAAGGCAGTGATAATGACTGGTGG
TGTGTACAAGATGGCACTGCCATCTTTGAACAGAGCCTGGCTCTGCAGCGCCACTTGATC
TTTTGAAACACCCTGGAGCTCTGTCTGTTGTTGCTGTTACTGTTTCCTTTGAAAAGAGTC
TGAAGAGAAGTTACAGTCCAGGTGAACTTGGAGATTGTGGGATTGGTTTCATTTCTGTTT
TGTGTTTTGTTTTTTTTTTTGTTTTTTTTTTAAATCATTTAGTGTTATTGCCGTTGATAC
TCTAACCTCCACCCTGTTTTCTAGTGAATGCTAAATACAGTATGGTACCATGTCAGTAAC
AGCGCGTGGTGCTGCCAGCACTGCCTTGGGCACAGCAGTGACAGCCCAAATGGGGGTGGA
GGAAACCTGTAATTTCCTTCTTATATGTGTTTGAAATACCAAGTGAATAATACTGTTCTT
CTGGACAAAAATGATAAACTAGTGAAAATTAAAGAAAGGGTTTTACATAATAGGCCCCAC
CTCTCAAACTATTTTTAGAAGCCTTTTGTAAACTAATTTCTTTTGATCACTATTTTGCAT
CAGTAAAATGATTTTTAAACCAATAAATCATCGGTTATTAGAAATAGTTGTCTCACAGTG
ATACTGGTTTTTCTTTTGTGCTGTTATGATTTAACATTGACAGGAGCACTACTTTAAATC
TTTTTATGTTCAGGTGTTTGTAACTTGGCCCTATAATTAGGCTGAATCATGGCTTCAAGG
TCTACTACAACATGTGTATCGTTCACAACCTGAGATTCTATTTTAATTTGAAGATATAAA
TTGTTACCCACTTTGGATTCTTTTTCAGTTACGTTTGTCTTTTTTAAATTGCTCAAATGT
TTTTTAATGGTCGAGTTATTAACACTTGAAAATCAGATACTGCACCATATACAGTATTTT
TCATGGTGTTTTTAATGAGTGCACCTATTATTAATGCTGTGCAAATTCATGTTACCAGTC
ATTGTTATATTACAAACAGACTTGCATGATTAACCAGTTTGTTGTTACACTTTTTTTTTT
AATTGGAGTATCTCTGACTCAGATCAGACTGGTTTCTCTTATGTCAATGCACACATGCAG
AAACAGTCAATTTTACATGCCCATAAAGACATCTGTAAAGACATATTATGGTCTGTTGTA
TAAATGTGTATCTAGGCACTTTATTATAAACTGGAATTTGACCTCATAGATATAAGTTGA
TCAGTCATTTGACCTAATTTGTGGTAGCTATCTGTATGTTTGGCAATCTTAATACAGACA
AGCTTTCCAAAAAGATTAGTAAAGAACCATCCTGCTGTTTTGTATAAGTCTGTCCAGCTA
TGGAAAAGACAACCTCAGATTTCTCTGTGCTGGCGTTTAATAGGGAGAATACGAACTGCT
TTAAAGGGCTGTGTGTTGAGGTTACTCTTTTTTAAAAGTAAGAGTCCGCCTGGCCCTTGG
GTGGCCTTTGCAGAAGGCTTGCAGCTGGAGAGAGTGTTGATCTGGGTTATTTTTCTGGCA
TTCTCTTAAGTTAAAAAGTTAACACTGGGACATGGGTTTGATCCTTTTGTACCTGATGAC
AGTGCAGAGATTGTGCACAGCTGGATAAAGATGTCAGAAAGCTACTTACTGTACATGGGC
AGTATCAGACTTCAAATCCTAATATTTCAGCTGTGCTTTTAATACTCAAAATGTTAGGGG
ATGGGGTGTTGAAGCTTTCCCTTTTTTGCTTTAACAATTTATAGAATTTAACAGATGTAC
TGTCTTTCATGTGGCCTCACATTAAAAGTTATGAGAACGTACACATGGTTTACAACTTTT
ACTATATACCTTTCCTTGGCCACCAAGTATTTTAAAAGTGTGCCACCTTTTAACCTTTAC
TTTTTTTAAGTTGAAGGTGATACTTTTTCTATATATGATGAAACTCATGTCAACTGAAGT
GAGTGTAATCTCAGATATCAACATTATCCTATTTTAAAATCACGCTATGGAAATATCACC
TGCATTCTGTCATTTGTCAGATTTACAGTACCTTTTTTTTTTCTTTTAACTTTTAGCATT
AAATAAAAATAAAGTTGGGAGCACTGAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               1403-1519, - strand, RNAz p=0.659085
               

               
               1863-2128, + strand, RNAz p=0.984056

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1403-1519, - strand, RNAz p=0.659085
               

               
               1863-2128, + strand, RNAz p=0.984056

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC020516, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC020516, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-2308, gnl|bosTau2|chr28 (3331664-3333991)
               

               
               2-2308, gnl|Hg17|chr1 (231049057-231046750)
               

               
               2-2308, gnl|Mm7|chr8 (125178101-125175900)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-2308, gnl|bosTau2|chr28 (3331664-3333991)
               

               
               2-2308, gnl|Hg17|chr1 (231049057-231046750)
               

               
               2-2308, gnl|Mm7|chr8 (125178101-125175900)

Expressed library(ies): 33 entry(ies)

More info

Expressed library(ies): 33 entry(ies)

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               bla (0.621736)
               

               
               tbr (0.616713)
               

               
               hea (0.613497)
               

               
               ste (0.405625)
               

               
               kid (0.389206)
               

               
               ldo (0.38801)
               

               
               ova (0.387397)
               

               
               cty (0.31224)
               

               
               sme (0.305437)
               

               
               ski (0.29347)
               

               
               lin (0.291206)
               

               
               lnt (0.284616)
               

               
               sug (0.254582)
               

               
               tra (0.246184)
               

               
               ece (0.229305)
               

               
               fcc (0.197785)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               sto (0.179824)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               fhi (0.169578)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               csk (0.140746)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               thg (0.126791)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               cbl (0.114797)
               

               
               nbm (0.0993246)

Expressed library(ies): 33 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bla (0.621736)
               

               
               tbr (0.616713)
               

               
               hea (0.613497)
               

               
               ste (0.405625)
               

               
               kid (0.389206)
               

               
               ldo (0.38801)
               

               
               ova (0.387397)
               

               
               cty (0.31224)
               

               
               sme (0.305437)
               

               
               ski (0.29347)
               

               
               lin (0.291206)
               

               
               lnt (0.284616)
               

               
               sug (0.254582)
               

               
               tra (0.246184)
               

               
               ece (0.229305)
               

               
               fcc (0.197785)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               sto (0.179824)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               fhi (0.169578)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               csk (0.140746)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               thg (0.126791)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               cbl (0.114797)
               

               
               nbm (0.0993246)

	1403-1519, - strand, RNAz p=0.659085
	1863-2128, + strand, RNAz p=0.984056

	2-2308, gnl\|bosTau2\|chr28 (3331664-3333991)
	2-2308, gnl\|Hg17\|chr1 (231049057-231046750)
	2-2308, gnl\|Mm7\|chr8 (125178101-125175900)

	bla (0.621736)
	tbr (0.616713)
	hea (0.613497)
	ste (0.405625)
	kid (0.389206)
	ldo (0.38801)
	ova (0.387397)
	cty (0.31224)
	sme (0.305437)
	ski (0.29347)
	lin (0.291206)
	lnt (0.284616)
	sug (0.254582)
	tra (0.246184)
	ece (0.229305)
	fcc (0.197785)
	nlu (0.191681)
	nep (0.183925)
	sto (0.179824)
	fbs (0.175346)
	sin (0.174948)
	fhi (0.169578)
	liv (0.146284)
	spl (0.143184)
	hyp (0.142837)
	csk (0.140746)
	hlv (0.139256)
	nca (0.136874)
	thg (0.126791)
	eru (0.120048)
	ebs (0.118301)
	cbl (0.114797)
	nbm (0.0993246)