Ss1.1-Pig4-TMW8037D13.3
|
CCCTCTCGGCGCCTGGCTTCTCCAGTCACCAACCTGCGGCTGCGGCGGCCGCCGGCGCGC
CCGGGAGCACCATGACAGATCAGGCCTTTGTGACACTGACCACAAATGATGCCTATGCCA
AAGGAGCTCTGGTCCTGGGCTCATCCCTGAAACAGCACAGGACCTCCAGGAGGCTGGTTG
TGCTCATCACCCCACAGGTCTCGGACTCCATGAGGAAAACTTTAGAGACGGTCTTTGATG
AAGTCATCGTGGTAGATGTCTTGGACAGTGGTGATTCTGCTCATCTAACCTTAATGAAGA
GGCCTGAGTTGGGTGTTACGTTAACTAAACTCCACTGCTGGTCACTTACACAGTACTCAA
AATGTGTATTCATGGATGCAGATACTCTGGTCCTAGCAAATATTGATGATCTTTTTGAGA
GAGAAGAATTGTCGGCGGCACCAGACCCAGGGTGGCCTGACTGCTTCAATTCTGGAGTCT
TTGTTTATCAGCCTTCAGTTGAAACATACAATCAGCTGTTGCACCTTGCTTCTGAGCAAG
GTAGTTTTGATGGTGGGGACCAGGGTTTACTGAACACATTTTTTAGCAGCTGGGCAACAA
CAGATATCAGAAAACACCTGCCATTTATTTATAACCTAAGCAGTGTTTCTATATACTCCT
ACCTCCCAGCATTTAAAGCATTTGGTGCAAATGCCAAAGTTGTGCATTTCCTAGGACAAA
TCAAACCGTGGAATTATACTTACGATCCTAAAACAAAAAGTGTCAAAAGTGAGTCCCATG
ATCCCAGTATGAGTCATCCAGAGTTCCTCAGCCTGTGGTGGGACATCTTCACTACCAACA
TCTTACCTCTGCTTCAACAGTTCGGCCTTGTCAAAGACACTCCCTCATACGTACACGTGG
AAAATGTCTCAGGAGCCGTATCACAGCTGTCCCTTGGGGAGGTCCCAGCTACCACACAGC
CTTTTGTATCCTCAGAAGAACGGAAGGAGCGGTGGGAACAGGGCCAGGCTGATTACATGG
GAGCAGATTCCTTTGACAACATCAAGAGAAAACTTGACACTTACCTCCAGTAGAAACACT
GCCATTTTCCCGTGGACACAGGCACTTGTCTCTGATACTTAGTTTCTTAAGCTGGGTTAA
GAAAGGTCTGTTAGAGTTGCTAGAGGCTTTCACTAAAATTCATCAGATGTGGGGATTTTG
CAGGACAGCTGGTGAGATCTGGGCAAAAGTTGTCAGGTAGCAGTTCTGTTAAATGCACGA
CAATGTTCTGCTTTTTAACCCTAGGCTAATATGTCAGAAAATCTCATTTATGTAGATTGC
CAACATATGTGTAAGGGAAACTCAATCTTAAGCTGTTAAGATGGCTCTATCAGCTCTTAA
AATGTGCCAAGCCGGGCTCCAAATCACTCTCCCTTCAGAAGGAGACACGGTATCTGTCTC
TTGCTTGCTTGTTGTACTCTTCACTAGACCTGTATTTTAGAACTGCCCAGAGGCTGCCAG
AGTGATTGTAATTCTGCTTTCAGGTAAAGACAGCCTACAGTAACACTGCTGAGTGATTCA
TAAACATCAACAAATGGTGTTGACCCATTTTATTTACTATTCTTAGTATCTGAAGATGTT
CACCAGTTTTGTGTACAGTAAGACGGCATGCTAAAATGCATTTGTTCAGTTCTGTATATC
TGAAAACAACAGTGTGTTCCCTGATGCTTACCTGCAATGGCACCTTGTATGAAAAATAAA
GACTTATTGACATATCAAAAAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CCCTCTCGGCGCCTGGCTTCTCCAGTCACCAACCTGCGGCTGCGGCGGCCGCCGGCGCGC
CCGGGAGCACCATGACAGATCAGGCCTTTGTGACACTGACCACAAATGATGCCTATGCCA
AAGGAGCTCTGGTCCTGGGCTCATCCCTGAAACAGCACAGGACCTCCAGGAGGCTGGTTG
TGCTCATCACCCCACAGGTCTCGGACTCCATGAGGAAAACTTTAGAGACGGTCTTTGATG
AAGTCATCGTGGTAGATGTCTTGGACAGTGGTGATTCTGCTCATCTAACCTTAATGAAGA
GGCCTGAGTTGGGTGTTACGTTAACTAAACTCCACTGCTGGTCACTTACACAGTACTCAA
AATGTGTATTCATGGATGCAGATACTCTGGTCCTAGCAAATATTGATGATCTTTTTGAGA
GAGAAGAATTGTCGGCGGCACCAGACCCAGGGTGGCCTGACTGCTTCAATTCTGGAGTCT
TTGTTTATCAGCCTTCAGTTGAAACATACAATCAGCTGTTGCACCTTGCTTCTGAGCAAG
GTAGTTTTGATGGTGGGGACCAGGGTTTACTGAACACATTTTTTAGCAGCTGGGCAACAA
CAGATATCAGAAAACACCTGCCATTTATTTATAACCTAAGCAGTGTTTCTATATACTCCT
ACCTCCCAGCATTTAAAGCATTTGGTGCAAATGCCAAAGTTGTGCATTTCCTAGGACAAA
TCAAACCGTGGAATTATACTTACGATCCTAAAACAAAAAGTGTCAAAAGTGAGTCCCATG
ATCCCAGTATGAGTCATCCAGAGTTCCTCAGCCTGTGGTGGGACATCTTCACTACCAACA
TCTTACCTCTGCTTCAACAGTTCGGCCTTGTCAAAGACACTCCCTCATACGTACACGTGG
AAAATGTCTCAGGAGCCGTATCACAGCTGTCCCTTGGGGAGGTCCCAGCTACCACACAGC
CTTTTGTATCCTCAGAAGAACGGAAGGAGCGGTGGGAACAGGGCCAGGCTGATTACATGG
GAGCAGATTCCTTTGACAACATCAAGAGAAAACTTGACACTTACCTCCAGTAGAAACACT
GCCATTTTCCCGTGGACACAGGCACTTGTCTCTGATACTTAGTTTCTTAAGCTGGGTTAA
GAAAGGTCTGTTAGAGTTGCTAGAGGCTTTCACTAAAATTCATCAGATGTGGGGATTTTG
CAGGACAGCTGGTGAGATCTGGGCAAAAGTTGTCAGGTAGCAGTTCTGTTAAATGCACGA
CAATGTTCTGCTTTTTAACCCTAGGCTAATATGTCAGAAAATCTCATTTATGTAGATTGC
CAACATATGTGTAAGGGAAACTCAATCTTAAGCTGTTAAGATGGCTCTATCAGCTCTTAA
AATGTGCCAAGCCGGGCTCCAAATCACTCTCCCTTCAGAAGGAGACACGGTATCTGTCTC
TTGCTTGCTTGTTGTACTCTTCACTAGACCTGTATTTTAGAACTGCCCAGAGGCTGCCAG
AGTGATTGTAATTCTGCTTTCAGGTAAAGACAGCCTACAGTAACACTGCTGAGTGATTCA
TAAACATCAACAAATGGTGTTGACCCATTTTATTTACTATTCTTAGTATCTGAAGATGTT
CACCAGTTTTGTGTACAGTAAGACGGCATGCTAAAATGCATTTGTTCAGTTCTGTATATC
TGAAAACAACAGTGTGTTCCCTGATGCTTACCTGCAATGGCACCTTGTATGAAAAATAAA
GACTTATTGACATATCAAAAAAAAAAAAAAAAAAAA
|
|
gi|12652581|gb|AAH00033.1| |
Protein identifier
|
gi|12652581|gb|AAH00033.1| |
|
359-709, gnl|bosTau2|chr16 (3544522-3544864) |
|
359-709, gnl|canFam2|chr38 (4610635-4611164) |
|
359-709, gnl|dasNov1|scaffold_18642 (41165-40615) |
|
359-709, gnl|echTel1|scaffold_317622 (6383-6847) |
|
359-709, gnl|hg17|chr1 (201791941-201792478) |
|
359-709, gnl|Hg17|chr1 (201792233-201792570) |
|
359-709, gnl|loxAfr1|scaffold_1983 (79232-78681) |
|
359-709, gnl|mm7|chr1 (132402883-132402425) |
|
359-709, gnl|Mm7|chr1 (132402653-132402318) |
|
359-709, gnl|panTro1|chr1 (184737183-184737722) |
|
359-709, gnl|rheMac2|chr1 (165327216-165326683) |
|
359-709, gnl|rn3|chr13 (45402566-45402137) |
| |
|
1249-1756, gnl|bosTau2|chr3 (27688971-27688466) |
|
1249-1756, gnl|Hg17|chr3 (150227657-150228119) |
| |
|
1475-1629, gnl|bosTau2|chr10 (67450299-67450142) |
|
1475-1629, gnl|Hg17|chr1 (55401489-55401648) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
359-709, gnl|bosTau2|chr16 (3544522-3544864) |
|
359-709, gnl|canFam2|chr38 (4610635-4611164) |
|
359-709, gnl|dasNov1|scaffold_18642 (41165-40615) |
|
359-709, gnl|echTel1|scaffold_317622 (6383-6847) |
|
359-709, gnl|hg17|chr1 (201791941-201792478) |
|
359-709, gnl|Hg17|chr1 (201792233-201792570) |
|
359-709, gnl|loxAfr1|scaffold_1983 (79232-78681) |
|
359-709, gnl|mm7|chr1 (132402883-132402425) |
|
359-709, gnl|Mm7|chr1 (132402653-132402318) |
|
359-709, gnl|panTro1|chr1 (184737183-184737722) |
|
359-709, gnl|rheMac2|chr1 (165327216-165326683) |
|
359-709, gnl|rn3|chr13 (45402566-45402137) |
| |
|
1249-1756, gnl|bosTau2|chr3 (27688971-27688466) |
|
1249-1756, gnl|Hg17|chr3 (150227657-150228119) |
| |
|
1475-1629, gnl|bosTau2|chr10 (67450299-67450142) |
|
1475-1629, gnl|Hg17|chr1 (55401489-55401648) |
|
tbr (2.00432) |
|
bfe (1.19886) |
|
sme (0.91631) |
|
isp (0.902256) |
|
ldo (0.873024) |
|
bla (0.87043) |
|
hea (0.817996) |
|
aor (0.781097) |
|
spl (0.715922) |
|
gul (0.710353) |
|
nms (0.641574) |
|
ste (0.540833) |
|
fbs (0.526039) |
|
spc (0.453463) |
|
ssp (0.406559) |
|
fcc (0.39557) |
|
kid (0.389206) |
|
nlu (0.383362) |
|
sug (0.381874) |
|
sag (0.36543) |
|
sto (0.359648) |
|
vin (0.332557) |
|
fco (0.314416) |
|
ova (0.258264) |
|
ret (0.257467) |
|
eru (0.240096) |
|
ebs (0.236602) |
|
mgp (0.230681) |
|
cbl (0.229595) |
|
mas (0.210305) |
|
cty (0.20816) |
|
cmu (0.186393) |
|
ton (0.1755) |
|
rec (0.17307) |
|
fhi (0.169578) |
|
csp (0.161186) |
|
mga (0.160205) |
|
fat (0.147427) |
|
pty (0.142714) |
|
che (0.136314) |
|
nmm (0.132802) |
|
thg (0.126791) |
|
tra (0.123092) |
|
pgl (0.118483) |
|
jca (0.11396) |
|
tbr (2.00432) |
|
bfe (1.19886) |
|
sme (0.91631) |
|
isp (0.902256) |
|
ldo (0.873024) |
|
bla (0.87043) |
|
hea (0.817996) |
|
aor (0.781097) |
|
spl (0.715922) |
|
gul (0.710353) |
|
nms (0.641574) |
|
ste (0.540833) |
|
fbs (0.526039) |
|
spc (0.453463) |
|
ssp (0.406559) |
|
fcc (0.39557) |
|
kid (0.389206) |
|
nlu (0.383362) |
|
sug (0.381874) |
|
sag (0.36543) |
|
sto (0.359648) |
|
vin (0.332557) |
|
fco (0.314416) |
|
ova (0.258264) |
|
ret (0.257467) |
|
eru (0.240096) |
|
ebs (0.236602) |
|
mgp (0.230681) |
|
cbl (0.229595) |
|
mas (0.210305) |
|
cty (0.20816) |
|
cmu (0.186393) |
|
ton (0.1755) |
|
rec (0.17307) |
|
fhi (0.169578) |
|
csp (0.161186) |
|
mga (0.160205) |
|
fat (0.147427) |
|
pty (0.142714) |
|
che (0.136314) |
|
nmm (0.132802) |
|
thg (0.126791) |
|
tra (0.123092) |
|
pgl (0.118483) |
|
jca (0.11396) |
