Ss1.1-Pig4-TMW8037D18.5
|
GCGCGAGCGATGGCTAAGCATCACCCGGACTTGATTTTTTGCCGCAAGCAGGCTGGTGTT
GCCATTGGAAGACTGTGTGAAAAATGTGATGGCAAGTGTGTGATCTGTGACTCCTACGTG
CGTCCCTGCACCCTGGTGCGCATATGTGACGAGTGTAACTATGGCTCTTACCAGGGGCGC
TGTGTGATCTGCGGAGGCCCGGGAGTTTCAGATGCCTATTATTGTAAGGAGTGCACCATC
CAGGAGAAGGATCGAGATGGCTGCCCAAAGATTGTCAATTTGGGGAGCTCTAAGACAGAT
CTCTTCTATGAACGCAAAAAATACGGCTTCAAGAAAAGGTGATTGGTGGGTTGCCTCTTT
CTCCCCCCCCCCCCAAGCTGCTGCAGCTGCCAGAAGAAATACCTACTACTGCCAGCAGAA
AGGGAGTGGCGCCCAGCGCATCACCTGAATTGCCTGTGAAGACCTTGGCACCTTTCCACC
TCTTCCTCTTCTCACCCAGACGTGGCAGGAATGGAAAACAGATTCTTCACAGGACACTCT
GGCAGACTGTACCCGAAAAATTGGATAGATTAGTTCATGGTGTCCCTTGAATTCATGAAG
CAAGGCTGTGTTACCCATATCGAAAAGTCCTCTGCACCAAAAGCTCTAACACGGAGTGGT
ATTTCCGTCTTCTGTTGGAGGCCTTGACCATAGTGCCCTCTGCAGTGAGAAGCCTGTCTC
TGCAGCAGCTCTGACGGTGGTCGTCCTCGGTGAACAAGAGCAGCGCACGGGGAGTCTCAG
AACAGCACATGTGGGCATTTCACCTTGTAACATTTACCATGCGCTTCCGGCTCATGTTAT
TTTTCTTCTAAGAAATTGGAAACCCTTTCTTTTGCTATTGTATCAATAAAGTAGCTGTTT
ATTTTCTGGAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GCGCGAGCGATGGCTAAGCATCACCCGGACTTGATTTTTTGCCGCAAGCAGGCTGGTGTT
GCCATTGGAAGACTGTGTGAAAAATGTGATGGCAAGTGTGTGATCTGTGACTCCTACGTG
CGTCCCTGCACCCTGGTGCGCATATGTGACGAGTGTAACTATGGCTCTTACCAGGGGCGC
TGTGTGATCTGCGGAGGCCCGGGAGTTTCAGATGCCTATTATTGTAAGGAGTGCACCATC
CAGGAGAAGGATCGAGATGGCTGCCCAAAGATTGTCAATTTGGGGAGCTCTAAGACAGAT
CTCTTCTATGAACGCAAAAAATACGGCTTCAAGAAAAGGTGATTGGTGGGTTGCCTCTTT
CTCCCCCCCCCCCCAAGCTGCTGCAGCTGCCAGAAGAAATACCTACTACTGCCAGCAGAA
AGGGAGTGGCGCCCAGCGCATCACCTGAATTGCCTGTGAAGACCTTGGCACCTTTCCACC
TCTTCCTCTTCTCACCCAGACGTGGCAGGAATGGAAAACAGATTCTTCACAGGACACTCT
GGCAGACTGTACCCGAAAAATTGGATAGATTAGTTCATGGTGTCCCTTGAATTCATGAAG
CAAGGCTGTGTTACCCATATCGAAAAGTCCTCTGCACCAAAAGCTCTAACACGGAGTGGT
ATTTCCGTCTTCTGTTGGAGGCCTTGACCATAGTGCCCTCTGCAGTGAGAAGCCTGTCTC
TGCAGCAGCTCTGACGGTGGTCGTCCTCGGTGAACAAGAGCAGCGCACGGGGAGTCTCAG
AACAGCACATGTGGGCATTTCACCTTGTAACATTTACCATGCGCTTCCGGCTCATGTTAT
TTTTCTTCTAAGAAATTGGAAACCCTTTCTTTTGCTATTGTATCAATAAAGTAGCTGTTT
ATTTTCTGGAAA
|
|
gi|20302071|ref|NP_620243.1| |
Protein identifier
|
gi|20302071|ref|NP_620243.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
Human gene identifier and UTR site,
human gene reading direction
|
86-252, gnl|bosTau2|chr5 (71273064-71272898) |
|
86-252, gnl|canFam2|chr10 (26863765-26863592) |
|
86-252, gnl|danRer3|chr12 (13655538-13655365) |
|
86-252, gnl|dasNov1|scaffold_69341 (4827-4989) |
|
86-252, gnl|echTel1|scaffold_295022 (63936-63763) |
|
86-252, gnl|galGal2|chr1 (46348327-46348154) |
|
86-252, gnl|hg17|chr22 (40187946-40188119) |
|
86-252, gnl|Hg17|chr22 (40188118-40187952) |
|
86-252, gnl|loxAfr1|scaffold_77198 (7877-8032) |
|
86-252, gnl|mm7|chr15 (81954721-81954894) |
|
86-252, gnl|Mm7|chr15 (81954893-81954727) |
|
86-252, gnl|monDom2|scaffold_269 (84542-84715) |
|
86-252, gnl|oryCun1|scaffold_196655 (4119-4292) |
|
86-252, gnl|panTro1|chr23 (40455077-40455250) |
|
86-252, gnl|rheMac2|chr10 (85425744-85425917) |
|
86-252, gnl|rn3|chr7 (120255998-120256171) |
|
86-252, gnl|tetNig1|chr2 (3199182-3199355) |
|
86-252, gnl|xenTro1|scaffold_325 (80951-80779) |
| |
|
254-909, gnl|bosTau2|chr5 (71265714-71265062) |
|
254-909, gnl|Hg17|chr22 (40180990-40180223) |
|
254-909, gnl|Mm7|chr15 (81950286-81949728) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
86-252, gnl|bosTau2|chr5 (71273064-71272898) |
|
86-252, gnl|canFam2|chr10 (26863765-26863592) |
|
86-252, gnl|danRer3|chr12 (13655538-13655365) |
|
86-252, gnl|dasNov1|scaffold_69341 (4827-4989) |
|
86-252, gnl|echTel1|scaffold_295022 (63936-63763) |
|
86-252, gnl|galGal2|chr1 (46348327-46348154) |
|
86-252, gnl|hg17|chr22 (40187946-40188119) |
|
86-252, gnl|Hg17|chr22 (40188118-40187952) |
|
86-252, gnl|loxAfr1|scaffold_77198 (7877-8032) |
|
86-252, gnl|mm7|chr15 (81954721-81954894) |
|
86-252, gnl|Mm7|chr15 (81954893-81954727) |
|
86-252, gnl|monDom2|scaffold_269 (84542-84715) |
|
86-252, gnl|oryCun1|scaffold_196655 (4119-4292) |
|
86-252, gnl|panTro1|chr23 (40455077-40455250) |
|
86-252, gnl|rheMac2|chr10 (85425744-85425917) |
|
86-252, gnl|rn3|chr7 (120255998-120256171) |
|
86-252, gnl|tetNig1|chr2 (3199182-3199355) |
|
86-252, gnl|xenTro1|scaffold_325 (80951-80779) |
| |
|
254-909, gnl|bosTau2|chr5 (71265714-71265062) |
|
254-909, gnl|Hg17|chr22 (40180990-40180223) |
|
254-909, gnl|Mm7|chr15 (81950286-81949728) |
|
cut (0.679694) |
|
cki (0.660939) |
|
che (0.545256) |
|
spl (0.429553) |
|
col (0.390016) |
|
fty (0.351679) |
|
med (0.348756) |
|
cag (0.302389) |
|
nbm (0.297974) |
|
cte (0.29274) |
|
lin (0.291206) |
|
csk (0.281492) |
|
cga (0.279096) |
|
cbe (0.239234) |
|
jca (0.22792) |
|
hea (0.204499) |
|
aor (0.195274) |
|
cmu (0.186393) |
|
sto (0.179824) |
|
gul (0.177588) |
|
ill (0.175593) |
|
fbs (0.175346) |
|
duo (0.172801) |
|
mcp (0.170648) |
|
eye (0.170503) |
|
cje (0.165235) |
|
nco (0.161734) |
|
csp (0.161186) |
|
isp (0.150376) |
|
fat (0.147427) |
|
lnt (0.142308) |
|
ute (0.132784) |
|
ova (0.129132) |
|
thg (0.126791) |
|
ese (0.126502) |
|
bla (0.124347) |
|
eep (0.122564) |
|
eru (0.120048) |
|
pgl (0.118483) |
|
ecc (0.115035) |
|
spc (0.113366) |
|
ldo (0.0970026) |
|
cut (0.679694) |
|
cki (0.660939) |
|
che (0.545256) |
|
spl (0.429553) |
|
col (0.390016) |
|
fty (0.351679) |
|
med (0.348756) |
|
cag (0.302389) |
|
nbm (0.297974) |
|
cte (0.29274) |
|
lin (0.291206) |
|
csk (0.281492) |
|
cga (0.279096) |
|
cbe (0.239234) |
|
jca (0.22792) |
|
hea (0.204499) |
|
aor (0.195274) |
|
cmu (0.186393) |
|
sto (0.179824) |
|
gul (0.177588) |
|
ill (0.175593) |
|
fbs (0.175346) |
|
duo (0.172801) |
|
mcp (0.170648) |
|
eye (0.170503) |
|
cje (0.165235) |
|
nco (0.161734) |
|
csp (0.161186) |
|
isp (0.150376) |
|
fat (0.147427) |
|
lnt (0.142308) |
|
ute (0.132784) |
|
ova (0.129132) |
|
thg (0.126791) |
|
ese (0.126502) |
|
bla (0.124347) |
|
eep (0.122564) |
|
eru (0.120048) |
|
pgl (0.118483) |
|
ecc (0.115035) |
|
spc (0.113366) |
|
ldo (0.0970026) |
