Ss1.1-Pig4-TMW8037D19.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAGGACCTGTGCTGCCGGGCGGTGGTGTCCTGCACGCCTGTGCACCTGGTGGACAGGCTG CCACTGCCCGTGGCCCTGAGAGGCCACCTCAAGTCCTTCTCGATGGCCAGCGGCCTGAAC GCCCGGATGATGCACGGCCGCTCCTACTCGCTCACCACCTGCTCCGGCTGCAAGAGGACC AGCCTCCGCAAAGCCAAGGCCGGCCGCCCCCCCCAGAGCCCCCCCAGACGCCGCAGCAGA AACGGCTGCAGAGTCTCCTGAGGAGGATGCGGGCGGGCTGCGGGGCCAGCAGAGGAGCGG GACAGCGGGGACAGGAGGCTGCCGGCGTGAAGGGGACCGTGTGCTCAGGGCAACGAGACG TGGCCGTCACGGTCAGGACGGGGCTCACCTGGCGATCCTGCGTGGCCCTTCACCGGCCTC TTGCTTTGGACCCGGGTTTATAGAGAGGTCGTGATCACAGGGCAACTGTTTTGGGGGCCA CACTCTCAGCACACGAGTTCCGGGCCAGGGGTTAAACCCCCGCCACAGGTCCTTAACCCA CTGCCCCACCAGGGAATTCCGCAAGTTTTTTCTTAAAATAACGGCTTCTTTATAGGAATG GTGACGTGCATGGGGTGAGTGCAAATCCTAGGGATTCCGAAGAGCAGGGATGGAGGGGAA TCAGAATCTTCAGCATCGCGAGGGGCCTCTCCGTAAACCTCTGTTTAACGTCAAGGCGCT GATGTGTAAATGCCACAGGCCCGTTGGAGGTTCCGTGCAGCGGATCTGTCCAGCGTGTGC AGGACACAGACTTGATAAAGGCTTTGCTATGTCATTGACTACATTGTGGTGTGAATAAGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAGGACCTGTGCTGCCGGGCGGTGGTGTCCTGCACGCCTGTGCACCTGGTGGACAGGCTG CCACTGCCCGTGGCCCTGAGAGGCCACCTCAAGTCCTTCTCGATGGCCAGCGGCCTGAAC GCCCGGATGATGCACGGCCGCTCCTACTCGCTCACCACCTGCTCCGGCTGCAAGAGGACC AGCCTCCGCAAAGCCAAGGCCGGCCGCCCCCCCCAGAGCCCCCCCAGACGCCGCAGCAGA AACGGCTGCAGAGTCTCCTGAGGAGGATGCGGGCGGGCTGCGGGGCCAGCAGAGGAGCGG GACAGCGGGGACAGGAGGCTGCCGGCGTGAAGGGGACCGTGTGCTCAGGGCAACGAGACG TGGCCGTCACGGTCAGGACGGGGCTCACCTGGCGATCCTGCGTGGCCCTTCACCGGCCTC TTGCTTTGGACCCGGGTTTATAGAGAGGTCGTGATCACAGGGCAACTGTTTTGGGGGCCA CACTCTCAGCACACGAGTTCCGGGCCAGGGGTTAAACCCCCGCCACAGGTCCTTAACCCA CTGCCCCACCAGGGAATTCCGCAAGTTTTTTCTTAAAATAACGGCTTCTTTATAGGAATG GTGACGTGCATGGGGTGAGTGCAAATCCTAGGGATTCCGAAGAGCAGGGATGGAGGGGAA TCAGAATCTTCAGCATCGCGAGGGGCCTCTCCGTAAACCTCTGTTTAACGTCAAGGCGCT GATGTGTAAATGCCACAGGCCCGTTGGAGGTTCCGTGCAGCGGATCTGTCCAGCGTGTGC AGGACACAGACTTGATAAAGGCTTTGCTATGTCATTGACTACATTGTGGTGTGAATAAGT |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1-184, - strand, RNAz p=0.570727 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-184, - strand, RNAz p=0.570727 |
| Aligned organism(s): 49 entry(ies) | More info |
| Aligned organism(s): 49 entry(ies) | Help | Less info |
| 1-359, gnl|bosTau2|chr19 (44197238-44197602) | |
| 1-359, gnl|canFam2|chrUn (11909361-11909634) | |
| 1-359, gnl|canFam2|chrUn (11909635-11909356) | |
| 1-359, gnl|danRer3|chr3 (19132299-19132572) | |
| 1-359, gnl|danRer3|chr3 (19132573-19132299) | |
| 1-359, gnl|dasNov1|scaffold_267972 (1038-1306) | |
| 1-359, gnl|dasNov1|scaffold_267972 (1307-1040) | |
| 1-359, gnl|echTel1|scaffold_42584 (1074-789) | |
| 1-359, gnl|echTel1|scaffold_42584 (788-1074) | |
| 1-359, gnl|fr1|chrUn (146966412-146966693) | |
| 1-359, gnl|fr1|chrUn (146966694-146966412) | |
| 1-359, gnl|galGal2|chr18 (3226003-3225725) | |
| 1-359, gnl|galGal2|chr18 (3225724-3226003) | |
| 1-359, gnl|Hg17|chr17 (78209288-78208884) | |
| 1-359, gnl|hg17|chrX (102560990-102561265) | |
| 1-359, gnl|hg17|chrX (101998957-101999236) | |
| 1-359, gnl|loxAfr1|scaffold_119662 (1485-1760) | |
| 1-359, gnl|loxAfr1|scaffold_119662 (1761-1485) | |
| 1-359, gnl|mm7|chr11 (121466081-121466354) | |
| 1-359, gnl|mm7|chr11 (121466354-121466081) | |
| 1-359, gnl|Mm7|chr11 (121466342-121466022) | |
| 1-359, gnl|monDom2|scaffold_49 (9562755-9562471) | |
| 1-359, gnl|monDom2|scaffold_49 (9562470-9562755) | |
| 1-359, gnl|oryCun1|scaffold_117858 (7295-7573) | |
| 1-359, gnl|oryCun1|scaffold_117858 (7573-7295) | |
| 1-359, gnl|panTro1|chrX (106061476-106061751) | |
| 1-359, gnl|panTro1|chrX (105481146-105481425) | |
| 1-359, gnl|rheMac2|chrX (102042344-102042622) | |
| 1-359, gnl|rheMac2|chrX (101545789-101546068) | |
| 1-359, gnl|rn3|chr10 (110606119-110606388) | |
| 1-359, gnl|rn3|chr10 (110606390-110606119) | |
| 1-359, gnl|tetNig1|chr3 (14049701-14049982) | |
| 1-359, gnl|tetNig1|chr3 (14049983-14049701) | |
| 1-359, gnl|xenTro1|scaffold_1433 (64781-65051) | |
| 1-359, gnl|xenTro1|scaffold_1433 (65052-64781) | |
| 561-825, gnl|bosTau2|chr19 (44197734-44198002) | |
| 561-825, gnl|canFam2|chrUn (11908740-11909256) | |
| 561-825, gnl|dasNov1|scaffold_267972 (446-964) | |
| 561-825, gnl|echTel1|scaffold_58456 (1258-781) | |
| 561-825, gnl|galGal2|chr18 (3226787-3226155) | |
| 561-825, gnl|hg17|chr17 (78208348-78208928) | |
| 561-825, gnl|Hg17|chr17 (78208739-78208475) | |
| 561-825, gnl|loxAfr1|scaffold_119662 (813-1369) | |
| 561-825, gnl|mm7|chr11 (121465285-121465855) | |
| 561-825, gnl|Mm7|chr11 (121465668-121465411) | |
| 561-825, gnl|oryCun1|scaffold_117858 (6647-7225) | |
| 561-825, gnl|panTro1|chr19 (81999891-82000471) | |
| 561-825, gnl|rheMac2|chr16 (78136834-78137410) | |
| 561-825, gnl|rn3|chr10 (110605321-110605893) |
| Aligned organism(s): 49 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-359, gnl|bosTau2|chr19 (44197238-44197602) | |
| 1-359, gnl|canFam2|chrUn (11909361-11909634) | |
| 1-359, gnl|canFam2|chrUn (11909635-11909356) | |
| 1-359, gnl|danRer3|chr3 (19132299-19132572) | |
| 1-359, gnl|danRer3|chr3 (19132573-19132299) | |
| 1-359, gnl|dasNov1|scaffold_267972 (1038-1306) | |
| 1-359, gnl|dasNov1|scaffold_267972 (1307-1040) | |
| 1-359, gnl|echTel1|scaffold_42584 (1074-789) | |
| 1-359, gnl|echTel1|scaffold_42584 (788-1074) | |
| 1-359, gnl|fr1|chrUn (146966412-146966693) | |
| 1-359, gnl|fr1|chrUn (146966694-146966412) | |
| 1-359, gnl|galGal2|chr18 (3226003-3225725) | |
| 1-359, gnl|galGal2|chr18 (3225724-3226003) | |
| 1-359, gnl|Hg17|chr17 (78209288-78208884) | |
| 1-359, gnl|hg17|chrX (102560990-102561265) | |
| 1-359, gnl|hg17|chrX (101998957-101999236) | |
| 1-359, gnl|loxAfr1|scaffold_119662 (1485-1760) | |
| 1-359, gnl|loxAfr1|scaffold_119662 (1761-1485) | |
| 1-359, gnl|mm7|chr11 (121466081-121466354) | |
| 1-359, gnl|mm7|chr11 (121466354-121466081) | |
| 1-359, gnl|Mm7|chr11 (121466342-121466022) | |
| 1-359, gnl|monDom2|scaffold_49 (9562755-9562471) | |
| 1-359, gnl|monDom2|scaffold_49 (9562470-9562755) | |
| 1-359, gnl|oryCun1|scaffold_117858 (7295-7573) | |
| 1-359, gnl|oryCun1|scaffold_117858 (7573-7295) | |
| 1-359, gnl|panTro1|chrX (106061476-106061751) | |
| 1-359, gnl|panTro1|chrX (105481146-105481425) | |
| 1-359, gnl|rheMac2|chrX (102042344-102042622) | |
| 1-359, gnl|rheMac2|chrX (101545789-101546068) | |
| 1-359, gnl|rn3|chr10 (110606119-110606388) | |
| 1-359, gnl|rn3|chr10 (110606390-110606119) | |
| 1-359, gnl|tetNig1|chr3 (14049701-14049982) | |
| 1-359, gnl|tetNig1|chr3 (14049983-14049701) | |
| 1-359, gnl|xenTro1|scaffold_1433 (64781-65051) | |
| 1-359, gnl|xenTro1|scaffold_1433 (65052-64781) | |
| 561-825, gnl|bosTau2|chr19 (44197734-44198002) | |
| 561-825, gnl|canFam2|chrUn (11908740-11909256) | |
| 561-825, gnl|dasNov1|scaffold_267972 (446-964) | |
| 561-825, gnl|echTel1|scaffold_58456 (1258-781) | |
| 561-825, gnl|galGal2|chr18 (3226787-3226155) | |
| 561-825, gnl|hg17|chr17 (78208348-78208928) | |
| 561-825, gnl|Hg17|chr17 (78208739-78208475) | |
| 561-825, gnl|loxAfr1|scaffold_119662 (813-1369) | |
| 561-825, gnl|mm7|chr11 (121465285-121465855) | |
| 561-825, gnl|Mm7|chr11 (121465668-121465411) | |
| 561-825, gnl|oryCun1|scaffold_117858 (6647-7225) | |
| 561-825, gnl|panTro1|chr19 (81999891-82000471) | |
| 561-825, gnl|rheMac2|chr16 (78136834-78137410) | |
| 561-825, gnl|rn3|chr10 (110605321-110605893) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fhi (0.169578) | |
| csk (0.140746) | |
| eje (0.0988338) |