Non-Coding RNA Search

Ss1.1-Pig4-TMW8037E06.3

Sequence:


               
               GGCTAGGGGTCC------------------------CAATGCCAGATCCTTAACCCACTG
AGCGAGGCCAGGGATCAAACCTGCGTCCTCATGGATACTAGTTGGGTTCATTAGCCACTG
AGCCACAACAGGAACTCCTGATTATTTTGTTTAATGTGTATTTCTCCCGATAGGCCATAA
GGTCCTTGAAATTGGAAATTGTATCTATTTTTGTTCAGCATTTTGTTACCCATTACTTAT
ACACACTTAGTAAATAATTTGTAAATATTTATAGAAAGAATGAATTAATTGAATTTATTT
ATTTGAACATGAACCATGGTGATCAAATGTAATAAGTCATATAAACTCATTATATAATAA
AACAAGTGTTTTACATAATAGGATATTGATTGGCCTAAGCATTTTCTCATTGCTTTACTT
ATTTCAGGTGATTCATTGGAAAAATTCCCTCTCTCTAGAACTTGTCAACTTGGTCCACAT
CAACAGAAGTCTAACTCCCTGAAACCTCTCTCCATGTCACAGCTGAAGCAGTGGAAACAT
TTTTCTGGAGATCATTTAAATCTTTCAGATCCTTTTCTTGAAAGAATAAGAGGGAATGTG
TCATTCTTTTTTCAGAATATAACCAATCAAACAACTGCTACATAATGAAATATTACTTTA
TGATATTACTATTCTCCTCCCTTAAAAAAAAAATCTTCTAAGCAAATGTAATTTTGGGAA
ACAAAAGAATTATTTTAATAATAACATATTTTGTTGCAAAATATGTCATAGTTTTGATAC
AATAGTCAAAGCTATTGAGTTGTTTAATTTTTTGTATATATTCTTAAATATTAAGCATTA
AAGATATACTTCTGTCATCCCGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCTAGGGGTCC------------------------CAATGCCAGATCCTTAACCCACTG
AGCGAGGCCAGGGATCAAACCTGCGTCCTCATGGATACTAGTTGGGTTCATTAGCCACTG
AGCCACAACAGGAACTCCTGATTATTTTGTTTAATGTGTATTTCTCCCGATAGGCCATAA
GGTCCTTGAAATTGGAAATTGTATCTATTTTTGTTCAGCATTTTGTTACCCATTACTTAT
ACACACTTAGTAAATAATTTGTAAATATTTATAGAAAGAATGAATTAATTGAATTTATTT
ATTTGAACATGAACCATGGTGATCAAATGTAATAAGTCATATAAACTCATTATATAATAA
AACAAGTGTTTTACATAATAGGATATTGATTGGCCTAAGCATTTTCTCATTGCTTTACTT
ATTTCAGGTGATTCATTGGAAAAATTCCCTCTCTCTAGAACTTGTCAACTTGGTCCACAT
CAACAGAAGTCTAACTCCCTGAAACCTCTCTCCATGTCACAGCTGAAGCAGTGGAAACAT
TTTTCTGGAGATCATTTAAATCTTTCAGATCCTTTTCTTGAAAGAATAAGAGGGAATGTG
TCATTCTTTTTTCAGAATATAACCAATCAAACAACTGCTACATAATGAAATATTACTTTA
TGATATTACTATTCTCCTCCCTTAAAAAAAAAATCTTCTAAGCAAATGTAATTTTGGGAA
ACAAAAGAATTATTTTAATAATAACATATTTTGTTGCAAAATATGTCATAGTTTTGATAC
AATAGTCAAAGCTATTGAGTTGTTTAATTTTTTGTATATATTCTTAAATATTAAGCATTA
AAGATATACTTCTGTCATCCCGCA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               115-835, gnl|bosTau2|chr19 (35317341-35318065)
               

               
               115-835, gnl|Hg17|chr8 (95454069-95453367)
               

               
               115-835, gnl|Mm7|chr4 (11542388-11542981)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               115-835, gnl|bosTau2|chr19 (35317341-35318065)
               

               
               115-835, gnl|Hg17|chr8 (95454069-95453367)
               

               
               115-835, gnl|Mm7|chr4 (11542388-11542981)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               lin (0.145603)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.145603)

	115-835, gnl\|bosTau2\|chr19 (35317341-35318065)
	115-835, gnl\|Hg17\|chr8 (95454069-95453367)
	115-835, gnl\|Mm7\|chr4 (11542388-11542981)