Non-Coding RNA Search

Ss1.1-Pig4-TMW8037E14.3

Sequence:


               
               TAAGTCCATGGATTTTAAACTTGGCGTTTTTTAAAGTCGCCCTGTTTTGAAAGGTGTTTT
CTAAGCAGATCTTTAATGGAATCGAGAGCCTCTGAGCGGAGCTACACGCGGCAGGAGCGC
GCCAGGTCCCGAAGCAGGGTGGCTCCTGGGCAGTGCAGGCGGCTGGGGGACAGACTCCAG
CCGAGGGGCCCTGAGGTGCTGGGGCTCCCCTGGGATCAGGGGGGAGCTCGAGCCCCGGAG
CTCAGCCCCGTGGGCGTTTCCTTATCCGCGGGTCCTGGCTCCTTCCATCTGACAGACCCG
CTGGCTTCGATGCTACCGAGGGCTGGGTCCGGGCTGAGCCATCGTGGTTCGTTGGTGCTG
CAGTGTTGTCAGGGTTTCTGTCCAGACTTCCAAGCTGCTTTCAAAGTGTGTGTGGTGGGG
GGAGGCGCTCCTCAGCCCCCTGAATCCGCAGGAGGGGTGGTGTTTGCTGTTTGCACCTCT
CCTCCTCGGACAGGCAGGGTGGCTCTAGGGCCGAGAGCCGGAGGCAGCCTCTCTAGGGGA
AGGAACCCACAAGGGGTGGGTAGGTCGGCCTCGTGCGGGACATGGAGATGGCTTTGAAAC
ACCGCTGATCCCTGGAGGCCACGGAGCAGCCTCGGCTGTCAACCGAATCCCAGAGACCCT
GGCTCGCTCATCTTGCTCACCAACTGTTCAGATCCGGTTCCTTTGTTTGCTTCTGTTCTT
ATTCTTTTGCAATTTCCACATCTTTTGACAGTCGGGGGGGGGAAACACACCACCCACGAT
AAAGGGTTCGTTCCATCCCGGGTAGCGCTGTTCCTTAACTCTGGCAGAACGCTTCTGAGA
AGGTTTCCTTTTTTATATTTAAAATGTTACTTTTCTGTATGATGTGCATGCGAGTTTACC
GTAACTTTTCTTAAACTTTTTAGTGCCGTTTCTAGTATATTCCTGTAAATGTCAGTTACT
GAAAATGAGTCCAATGTAAGTAGTTTTAGCTTGTTTATTGCAATGCTGGCCTCAACACAA
CAGAATAAAAATGGTAGAAAGTATTCTTTGATGTTTCTGGTAATCATGGACCCTGCTCCT
GGGGCATTTGTTTTGTTTTCATAATAAAAGGAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAAGTCCATGGATTTTAAACTTGGCGTTTTTTAAAGTCGCCCTGTTTTGAAAGGTGTTTT
CTAAGCAGATCTTTAATGGAATCGAGAGCCTCTGAGCGGAGCTACACGCGGCAGGAGCGC
GCCAGGTCCCGAAGCAGGGTGGCTCCTGGGCAGTGCAGGCGGCTGGGGGACAGACTCCAG
CCGAGGGGCCCTGAGGTGCTGGGGCTCCCCTGGGATCAGGGGGGAGCTCGAGCCCCGGAG
CTCAGCCCCGTGGGCGTTTCCTTATCCGCGGGTCCTGGCTCCTTCCATCTGACAGACCCG
CTGGCTTCGATGCTACCGAGGGCTGGGTCCGGGCTGAGCCATCGTGGTTCGTTGGTGCTG
CAGTGTTGTCAGGGTTTCTGTCCAGACTTCCAAGCTGCTTTCAAAGTGTGTGTGGTGGGG
GGAGGCGCTCCTCAGCCCCCTGAATCCGCAGGAGGGGTGGTGTTTGCTGTTTGCACCTCT
CCTCCTCGGACAGGCAGGGTGGCTCTAGGGCCGAGAGCCGGAGGCAGCCTCTCTAGGGGA
AGGAACCCACAAGGGGTGGGTAGGTCGGCCTCGTGCGGGACATGGAGATGGCTTTGAAAC
ACCGCTGATCCCTGGAGGCCACGGAGCAGCCTCGGCTGTCAACCGAATCCCAGAGACCCT
GGCTCGCTCATCTTGCTCACCAACTGTTCAGATCCGGTTCCTTTGTTTGCTTCTGTTCTT
ATTCTTTTGCAATTTCCACATCTTTTGACAGTCGGGGGGGGGAAACACACCACCCACGAT
AAAGGGTTCGTTCCATCCCGGGTAGCGCTGTTCCTTAACTCTGGCAGAACGCTTCTGAGA
AGGTTTCCTTTTTTATATTTAAAATGTTACTTTTCTGTATGATGTGCATGCGAGTTTACC
GTAACTTTTCTTAAACTTTTTAGTGCCGTTTCTAGTATATTCCTGTAAATGTCAGTTACT
GAAAATGAGTCCAATGTAAGTAGTTTTAGCTTGTTTATTGCAATGCTGGCCTCAACACAA
CAGAATAAAAATGGTAGAAAGTATTCTTTGATGTTTCTGGTAATCATGGACCCTGCTCCT
GGGGCATTTGTTTTGTTTTCATAATAAAAGGAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               279-1123, gnl|bosTau2|chr11 (83917937-83918762)
               

               
               279-1123, gnl|Hg17|chr9 (133925851-133924985)
               

               
               279-1123, gnl|Mm7|chr2 (27453635-27452895)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               279-1123, gnl|bosTau2|chr11 (83917937-83918762)
               

               
               279-1123, gnl|Hg17|chr9 (133925851-133924985)
               

               
               279-1123, gnl|Mm7|chr2 (27453635-27452895)

Expressed library(ies): 16 entry(ies)

More info

Expressed library(ies): 16 entry(ies)

Help | Less info


               
               eye (0.511509)
               

               
               sin (0.349895)
               

               
               thg (0.253582)
               

               
               pan (0.23596)
               

               
               hea (0.204499)
               

               
               nbm (0.198649)
               

               
               duo (0.172801)
               

               
               fco (0.157208)
               

               
               cag (0.151194)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               ssp (0.13552)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               med (0.116252)
               

               
               ldo (0.0970026)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.511509)
               

               
               sin (0.349895)
               

               
               thg (0.253582)
               

               
               pan (0.23596)
               

               
               hea (0.204499)
               

               
               nbm (0.198649)
               

               
               duo (0.172801)
               

               
               fco (0.157208)
               

               
               cag (0.151194)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               ssp (0.13552)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               med (0.116252)
               

               
               ldo (0.0970026)

	279-1123, gnl\|bosTau2\|chr11 (83917937-83918762)
	279-1123, gnl\|Hg17\|chr9 (133925851-133924985)
	279-1123, gnl\|Mm7\|chr2 (27453635-27452895)

	eye (0.511509)
	sin (0.349895)
	thg (0.253582)
	pan (0.23596)
	hea (0.204499)
	nbm (0.198649)
	duo (0.172801)
	fco (0.157208)
	cag (0.151194)
	lnt (0.142308)
	hlv (0.139256)
	ssp (0.13552)
	ese (0.126502)
	bla (0.124347)
	med (0.116252)
	ldo (0.0970026)