Non-Coding RNA Search

Ss1.1-Pig4-TMW8037E16.5

Sequence:


               
               AGGAGAATGGAGACCAAACCTGTGATAACCTGTCTCAAAACCCTCCTCATCATCTACTCC
TTCGTCTTCTGGATCACTGGCGTGATCCTGCTGGCCGTCGGAGTCTGGGGCAAGCTCACT
CTGGGCACCTATATCTCCCTCATTGCCGAGAACTCCACAAATGCCCCCTACGTGCTCATC
GGAACTGGCACCACTATCGTCGTTTTTGGCCTGTTCGGATGCTTTGCCACATGCCGTGGT
AGCCCATGGATGCTGAAACTGTATGCCATGTTTCTGTCCCTGGTGTTCCTGGCTGAGCTC
GTCGCTGGCATTTCAGGCTTTGTGTTTCGCCATGAGATCAAGGACACCTTCCTGAGAACT
TACACGGACGCCATGCAGAATTACAATGGCAACGACGAGAGGAGCCGGGCTGTGGATCAT
GTGCAGCGCAGCCTGAGCTGCTGTGGCGTGCAGAACTACACCAACTGGAGCACCAGCCCC
TACTTCCTGGAGCACGGCATCCCCCCGAGCTGCTGCATGAACGAGACCGACTGCAATCCC
CAGGACCTGCACAACCTGACCGTGGCTGCCACTAAAGTGAACCAGAAGGGCTGTTATGAT
CTGGTGACCAGTTTCATGGAGACCAACATGGGGATCATCGCGGGAGTGGCTTTTGGAATC
GCATTCTCCCAGCTGATTGGCATGCTGCTGGCCTGCTGCCTGTCCCGGTTCATCACGGCC
AACCAGTATGAGATGGTGTAAGGAGTCTTTCAACAACGATGGAGTAAGAAACCTGTTTCC
AAAAGGCATGGCAGCAATCTTTGAAAGACCTCCAAAGAATGTTAGAGCACAGTACCTAGT
ACACCTGTCCTAACCCTCCCACCCCGCGTGCAACTGACTCTCCCACACAGCCTCTGCTCC
ATCGTTCCGCCTGCTTCATGCATAGCGTTCCATTTTGTGAAGCCCTGTTGTGCCAGAGTG
TAGCCAGGTTCCCTGCATCTAGTCCAAGGGGACCCCACCTGAGGCCCTGTGCGTGCCTGC
TCCTCCATCTGTACTTGGTCCGCAGCCCATTGTAGGTGACTAGTTCTTCACGCCGTCACT
GGCCCTGCCGGGCCCTGCATGTCGTGTGGGAGGCTCCTGTTAGCCCTTGATGATGACTGA
TAAATGCCACACTCCCTTAGATGTAGATAAGCAGATAGCTATCTGTTCTTTTGGCTTCAT
CTCCTTTGGCTGGGTTTTCCTTTTTACTAAGGTTCTTTGCTACCTTATTCGGGCTGCCTA
GGACATGTGGAGAGAGGCATTGGTAACTGTTCAGGAGAAGCAAAGGACCTGGGTCATATG
CACGAAGGGAATGGTCGAGCTTTGGGCAGCATCCTTCCTTGCTCCTTGTGGTTCCATGCC
TGGGAATGCGGAGACCCTTTAGTGCCCCTAGGCCTCTCAGTTGAAAGCTGTCTTGTTGCT
TCCTGTGAAGGAAATAATATTACTTCTGGTTTTCTTCGATTAACTGCTATTATTTTACTA
CTTATTTCTATTTTTTTTCTTTGCATTGACATCATAGACATTGAGGACCTCATCAAATCA
ATTTAAAAACGAGTGTGAAGGGGGAACAAAAGTCAAAATATTTTTAAACAATCTTAAAAA
AGAATGCCTCTGTCTCGCATGCCAACAAGAATGCATTGATATCGTGAACATTTGTGATAC
ATGTATTAATAAATAGAATCGTTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGAGAATGGAGACCAAACCTGTGATAACCTGTCTCAAAACCCTCCTCATCATCTACTCC
TTCGTCTTCTGGATCACTGGCGTGATCCTGCTGGCCGTCGGAGTCTGGGGCAAGCTCACT
CTGGGCACCTATATCTCCCTCATTGCCGAGAACTCCACAAATGCCCCCTACGTGCTCATC
GGAACTGGCACCACTATCGTCGTTTTTGGCCTGTTCGGATGCTTTGCCACATGCCGTGGT
AGCCCATGGATGCTGAAACTGTATGCCATGTTTCTGTCCCTGGTGTTCCTGGCTGAGCTC
GTCGCTGGCATTTCAGGCTTTGTGTTTCGCCATGAGATCAAGGACACCTTCCTGAGAACT
TACACGGACGCCATGCAGAATTACAATGGCAACGACGAGAGGAGCCGGGCTGTGGATCAT
GTGCAGCGCAGCCTGAGCTGCTGTGGCGTGCAGAACTACACCAACTGGAGCACCAGCCCC
TACTTCCTGGAGCACGGCATCCCCCCGAGCTGCTGCATGAACGAGACCGACTGCAATCCC
CAGGACCTGCACAACCTGACCGTGGCTGCCACTAAAGTGAACCAGAAGGGCTGTTATGAT
CTGGTGACCAGTTTCATGGAGACCAACATGGGGATCATCGCGGGAGTGGCTTTTGGAATC
GCATTCTCCCAGCTGATTGGCATGCTGCTGGCCTGCTGCCTGTCCCGGTTCATCACGGCC
AACCAGTATGAGATGGTGTAAGGAGTCTTTCAACAACGATGGAGTAAGAAACCTGTTTCC
AAAAGGCATGGCAGCAATCTTTGAAAGACCTCCAAAGAATGTTAGAGCACAGTACCTAGT
ACACCTGTCCTAACCCTCCCACCCCGCGTGCAACTGACTCTCCCACACAGCCTCTGCTCC
ATCGTTCCGCCTGCTTCATGCATAGCGTTCCATTTTGTGAAGCCCTGTTGTGCCAGAGTG
TAGCCAGGTTCCCTGCATCTAGTCCAAGGGGACCCCACCTGAGGCCCTGTGCGTGCCTGC
TCCTCCATCTGTACTTGGTCCGCAGCCCATTGTAGGTGACTAGTTCTTCACGCCGTCACT
GGCCCTGCCGGGCCCTGCATGTCGTGTGGGAGGCTCCTGTTAGCCCTTGATGATGACTGA
TAAATGCCACACTCCCTTAGATGTAGATAAGCAGATAGCTATCTGTTCTTTTGGCTTCAT
CTCCTTTGGCTGGGTTTTCCTTTTTACTAAGGTTCTTTGCTACCTTATTCGGGCTGCCTA
GGACATGTGGAGAGAGGCATTGGTAACTGTTCAGGAGAAGCAAAGGACCTGGGTCATATG
CACGAAGGGAATGGTCGAGCTTTGGGCAGCATCCTTCCTTGCTCCTTGTGGTTCCATGCC
TGGGAATGCGGAGACCCTTTAGTGCCCCTAGGCCTCTCAGTTGAAAGCTGTCTTGTTGCT
TCCTGTGAAGGAAATAATATTACTTCTGGTTTTCTTCGATTAACTGCTATTATTTTACTA
CTTATTTCTATTTTTTTTCTTTGCATTGACATCATAGACATTGAGGACCTCATCAAATCA
ATTTAAAAACGAGTGTGAAGGGGGAACAAAAGTCAAAATATTTTTAAACAATCTTAAAAA
AGAATGCCTCTGTCTCGCATGCCAACAAGAATGCATTGATATCGTGAACATTTGTGATAC
ATGTATTAATAAATAGAATCGTTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57114011|ref|NP_001009070.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57114011|ref|NP_001009070.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               493-768, gnl|bosTau2|chr14 (27626979-27627253)
               


               
               1440-1621, gnl|bosTau2|chr26 (15567456-15567636)
               

               
               1440-1621, gnl|Hg17|chrX (38304121-38304303)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               493-768, gnl|bosTau2|chr14 (27626979-27627253)
               


               
               1440-1621, gnl|bosTau2|chr26 (15567456-15567636)
               

               
               1440-1621, gnl|Hg17|chrX (38304121-38304303)

Expressed library(ies): 34 entry(ies)

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Expressed library(ies): 34 entry(ies)

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               cbr (3.32736)
               

               
               fce (1.08637)
               

               
               fhi (1.01747)
               

               
               fcc (0.988924)
               

               
               ece (0.687916)
               

               
               fco (0.628832)
               

               
               ebs (0.591506)
               

               
               ecc (0.575175)
               

               
               fbs (0.526039)
               

               
               eye (0.511509)
               

               
               cty (0.41632)
               

               
               ese (0.253004)
               

               
               cbe (0.239234)
               

               
               pgl (0.236967)
               

               
               eje (0.197668)
               

               
               sag (0.182715)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               rec (0.17307)
               

               
               mcp (0.170648)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               hyp (0.142837)
               

               
               ssp (0.13552)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               spc (0.113366)
               

               
               ldo (0.0970026)

Expressed library(ies): 34 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbr (3.32736)
               

               
               fce (1.08637)
               

               
               fhi (1.01747)
               

               
               fcc (0.988924)
               

               
               ece (0.687916)
               

               
               fco (0.628832)
               

               
               ebs (0.591506)
               

               
               ecc (0.575175)
               

               
               fbs (0.526039)
               

               
               eye (0.511509)
               

               
               cty (0.41632)
               

               
               ese (0.253004)
               

               
               cbe (0.239234)
               

               
               pgl (0.236967)
               

               
               eje (0.197668)
               

               
               sag (0.182715)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               rec (0.17307)
               

               
               mcp (0.170648)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               hyp (0.142837)
               

               
               ssp (0.13552)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               spc (0.113366)
               

               
               ldo (0.0970026)

	493-768, gnl\|bosTau2\|chr14 (27626979-27627253)

	1440-1621, gnl\|bosTau2\|chr26 (15567456-15567636)
	1440-1621, gnl\|Hg17\|chrX (38304121-38304303)

	cbr (3.32736)
	fce (1.08637)
	fhi (1.01747)
	fcc (0.988924)
	ece (0.687916)
	fco (0.628832)
	ebs (0.591506)
	ecc (0.575175)
	fbs (0.526039)
	eye (0.511509)
	cty (0.41632)
	ese (0.253004)
	cbe (0.239234)
	pgl (0.236967)
	eje (0.197668)
	sag (0.182715)
	fty (0.17584)
	ton (0.1755)
	rec (0.17307)
	mcp (0.170648)
	nje (0.16592)
	cki (0.165235)
	hyp (0.142837)
	ssp (0.13552)
	nmm (0.132802)
	kid (0.129735)
	sug (0.127291)
	thg (0.126791)
	eep (0.122564)
	cly (0.120642)
	eru (0.120048)
	med (0.116252)
	spc (0.113366)
	ldo (0.0970026)