Non-Coding RNA Search

Ss1.1-Pig4-TMW8037E17.5

Sequence:


               
               TTGAACTTAAGGGCATTATGTTGTGAAGAAATGGGGGCTGCAGTGACTCGTGCAGTCCGG
AATTTCAACCTAGAGAACCGGGCGGAACGGGAAATCAGCAAGTTGAAACCTTCCCCTGCT
CCCAGGCACCCCTCCACCAAGACCCTCCTGCGAGAGCAGATAAACAGCCATCCAGAAATT
AAGGGAGAAATTGCTAGAAAAGATGACAAACTGTTGTCACTACTAAAAGATGTGTATGTT
GATTCCACAGATCCCGTGTCTTCTGTGCAGGTCAAGGATACAGGAGCACATCAGAAGCCA
AAGGAGTTCAGGTTGCCGAAAGACCATCAGTTTGACATGATGAATGTTAAGAACATTCCC
AAAGGCAAAATTTCTATTGTAGAGGCATTGACACTTCTCAATAATCATAAACTGTATCCA
GACACATGGACTGCTGAGAAAATAGCCAAAGAATACCATCTAGAACAGCAAGATGTGAAT
TCCCTTCTCAAATATTTTGTTACCTTTGAAGTCAAAATCTTCCCTCCGGGAGGCAAGAAG
GCAATACAATCAAAATGAAGAAAATCTTGAAATTACTTTTCCTATATGTCTTCCACATCC
TCATGCCCTGTTTATTTTCTCATTTTTAGCATACTAAATTATATAAATTACCAAATGTAT
AAAGCGCCTTCCTTGCGAGAACATGCTATTTATTGAGCTCTGCTGAATTTTCAGGATTGC
TGATAGAAGGAATTTTGTTCTCTTTTAAATTTTAATTTGGTTTAGGCATATGTTCATATG
TAATATCAGCATGGCTAATCAGCACATGTATAAACGTATTATAAATAAAAGAGTTATCGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGAACTTAAGGGCATTATGTTGTGAAGAAATGGGGGCTGCAGTGACTCGTGCAGTCCGG
AATTTCAACCTAGAGAACCGGGCGGAACGGGAAATCAGCAAGTTGAAACCTTCCCCTGCT
CCCAGGCACCCCTCCACCAAGACCCTCCTGCGAGAGCAGATAAACAGCCATCCAGAAATT
AAGGGAGAAATTGCTAGAAAAGATGACAAACTGTTGTCACTACTAAAAGATGTGTATGTT
GATTCCACAGATCCCGTGTCTTCTGTGCAGGTCAAGGATACAGGAGCACATCAGAAGCCA
AAGGAGTTCAGGTTGCCGAAAGACCATCAGTTTGACATGATGAATGTTAAGAACATTCCC
AAAGGCAAAATTTCTATTGTAGAGGCATTGACACTTCTCAATAATCATAAACTGTATCCA
GACACATGGACTGCTGAGAAAATAGCCAAAGAATACCATCTAGAACAGCAAGATGTGAAT
TCCCTTCTCAAATATTTTGTTACCTTTGAAGTCAAAATCTTCCCTCCGGGAGGCAAGAAG
GCAATACAATCAAAATGAAGAAAATCTTGAAATTACTTTTCCTATATGTCTTCCACATCC
TCATGCCCTGTTTATTTTCTCATTTTTAGCATACTAAATTATATAAATTACCAAATGTAT
AAAGCGCCTTCCTTGCGAGAACATGCTATTTATTGAGCTCTGCTGAATTTTCAGGATTGC
TGATAGAAGGAATTTTGTTCTCTTTTAAATTTTAATTTGGTTTAGGCATATGTTCATATG
TAATATCAGCATGGCTAATCAGCACATGTATAAACGTATTATAAATAAAAGAGTTATCGT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|14031084|emb|CAC38368.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|14031084|emb|CAC38368.1|

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               4-167, gnl|bosTau2|chr9 (28916772-28916934)
               

               
               4-167, gnl|Hg17|chr6 (97452424-97452262)
               

               
               4-167, gnl|Mm7|chr4 (24967942-24968102)
               


               
               369-830, gnl|bosTau2|chr11 (61612539-61612993)
               

               
               369-830, gnl|Hg17|chr15 (47236150-47236600)
               

               
               369-830, gnl|Mm7|chrX (90648858-90648479)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-167, gnl|bosTau2|chr9 (28916772-28916934)
               

               
               4-167, gnl|Hg17|chr6 (97452424-97452262)
               

               
               4-167, gnl|Mm7|chr4 (24967942-24968102)
               


               
               369-830, gnl|bosTau2|chr11 (61612539-61612993)
               

               
               369-830, gnl|Hg17|chr15 (47236150-47236600)
               

               
               369-830, gnl|Mm7|chrX (90648858-90648479)

Expressed library(ies): 9 entry(ies)

More info

Expressed library(ies): 9 entry(ies)

Help | Less info


               
               ova (0.387397)
               

               
               fty (0.17584)
               

               
               fco (0.157208)
               

               
               cag (0.151194)
               

               
               ski (0.146735)
               

               
               lnt (0.142308)
               

               
               che (0.136314)
               

               
               bla (0.124347)
               

               
               tra (0.123092)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ova (0.387397)
               

               
               fty (0.17584)
               

               
               fco (0.157208)
               

               
               cag (0.151194)
               

               
               ski (0.146735)
               

               
               lnt (0.142308)
               

               
               che (0.136314)
               

               
               bla (0.124347)
               

               
               tra (0.123092)

	4-167, gnl\|bosTau2\|chr9 (28916772-28916934)
	4-167, gnl\|Hg17\|chr6 (97452424-97452262)
	4-167, gnl\|Mm7\|chr4 (24967942-24968102)

	369-830, gnl\|bosTau2\|chr11 (61612539-61612993)
	369-830, gnl\|Hg17\|chr15 (47236150-47236600)
	369-830, gnl\|Mm7\|chrX (90648858-90648479)

	ova (0.387397)
	fty (0.17584)
	fco (0.157208)
	cag (0.151194)
	ski (0.146735)
	lnt (0.142308)
	che (0.136314)
	bla (0.124347)
	tra (0.123092)