Ss1.1-Pig4-TMW8037E19.3
|
CTTTCCCCCACTTTCCACTGGACAGTTGGAAGTGGCCATGCTTCCCTCAAGCAGGCAATT
ATAGTGGTTGCCCTTAAGTCATGTTAGGGTGTTAAGTATTGGGACAGAAGATTAGGGGAC
CCAGAACAGAGAGTTGCTAAGTACTTGACCTTGAGTGGACACTGAACCACTTTTATCCAT
TTGAAAAGTGTCAAATGGTGGGACGAATTTTATATATATATATATGGACTATATGACATG
ATGTCTCTGGAGCTGTGCTGTTCTATACAGTCGCCATTAGACACATGGTGTTCACTCCAA
TTAATAAAATACAATATTCAGCTCCACAGTCATGCTGGCTGCATGTGGCCAGTGGCTTGG
ATGGCACAGATGTACGACATCTCCATTACAGAAAATTATGTAGGACAGCACCATGTCAGG
AGTGCTCATGTGAACATTTTAGAAGCCAGGATCATGAATTCCAATTATGAGCCTAAAAGC
AGACATGTAGACTATATCATAATGATGACTATTTCAGGTGGGAAGAGGAAGTTGAGGACC
TGTTTCCAAGAGTCTAAGATCCAATTTCTAAGTTCTTTGTTTTCAGTCTTAGGTGCCCTT
CACAACATTCACTGTCCCTACGAGGTAATCAAAAAAGAGCACAACTCGAGGTTAAGGTCC
CAAAGCTTGTGATGGATGAGCTTTGGAAAAAGTGAATGCGCATGGATTTTTTAGCACACA
GGCTCTAGACATGTATGTGTAGGTTAACTCAACCACTGGAGATGTCTTCGAACAAAGGTA
TAGCTTTTCAGATTAATGATTGCATCAGGAAATAATTAGAAGGTGATATTTTTAAAATTT
TAGCAATGCTCTGAAGGATTCTTCTAAATCTGTCATCATAATGAAAAAAAAGTCATTCCC
CACAGTGCTGTCCTCAAGGACAAGTGTGGTTATAAGGGAACAGCATGTTTGGAGAGATTG
CTCTAATTCATAGTCATGTGTAATTCTAACAGCCAGAATTCCACAAGTGACCCTCGATGA
CTTTGTATATCCTACCCCTATGAGTGTGTGTAGAACCTGTGATTATGACCCATAATTATG
TTATGTTATACATTAAAAGACAGATTATCCGGGGATGGCTAATCTGACCATGTGAGCTCT
GTATAAGCAGAGAGTTTTCTCAGGCTGTTTAGCAGAAGTCAGAGATTCAAAGCAGGACTT
AAGGCACCAAGGCTGGTTTAAAATGAGGGTGGCCACATGAGAAGAAATGCAGTTCTTAAG
GAAGTGAGAGGCCCCAGCTGGCAGCCAAGGGGATGGAAATGGCAGTCCTGCAGCCACAGG
AACTGAATTCAGCCAACAACCAGAAGAAGTTTGCAGGTGGACCCTCTGGAGCAGCTAAGA
GCCCCAGCCCTGCTAGCACCTGGATTCCAGCCTTGTGAGAGCTCGGTCATGCCTGCCTGG
ACTCCTGGCCTACAGAGCTGTCAAATAATAAATGGGTGTTGTTTTAAGCTTTTAAATTTT
GCCGTGATTTTATGCAGCAATATAAAATGAATACATTAAAGCAGTGACGAGGAGAAGTCT
TGGTACTTGATTCCCTCTGGCATGCTGGGTATTCCTTGATAAACACATGTCTTACACTAG
CACATCATATACCCAGGCCACATCTGGCATTCTCTGCTGGAGATCTTGACTGATTATTAC
TGGAAGGTTTTTGGCAAAGACTTGCAGTGTCTTAGTAGCATTTCATGAGGGAACTACTAG
CACAAGATTCAGTGGGTAGGGTCCAGAGTGTAAGGAATTGTTTTCCTGGAATGGGTGTCA
CTTTATGTTGATCTAGGCTGTTGCAAGCCTGTCACTGTATTATTTAAGAATGATGAACAG
TGTTATTTTAAATTAGATATTAAGAGGAAAAAAAGTATGTCTTTATGGAGAGATCAAATA
ATCTATTCTGTGTTGAAGGACCTGATTTTTTTTTTTTTACCAAAAGCTTACTTTATTATC
TAAGCACAGATCAAATCCTATACATGCTAACCAAATTTTTGTACCTTGGATATATTTTCC
AAAATACTTCTCTGCTTCCAAGCTATTAATTGCTAATGAAGTTTTAATTTTGGTTTTTCC
ATTACTTTATGTGCTTTTAACCACATAGCCTTGATGAAAGAAAGGTTGAGCTAAAAGAAG
GAAAATGAGAGGCTAAGACTGTCAAAAGGCCATAAATTGAAGTCATAATCAAATCTGAGG
GTCCTAAGGGAACTCAGACATCTGATCTCTTTTCTTTAAAGAGGAAACTTTTCCCAGCTA
TGTAGCAGTGTTTGTAGCATGTAGAATTCAGTTTGATAGTTGTAAACTTTTAATTATTAA
TCTTAACAGATATGTGCCATGATAATATGCTTACTTTATTTCTTCAATGCATGTGAACCT
ACAGTGCTGAAGAGACCCCACCACAGTATTACTTAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
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CTTTCCCCCACTTTCCACTGGACAGTTGGAAGTGGCCATGCTTCCCTCAAGCAGGCAATT
ATAGTGGTTGCCCTTAAGTCATGTTAGGGTGTTAAGTATTGGGACAGAAGATTAGGGGAC
CCAGAACAGAGAGTTGCTAAGTACTTGACCTTGAGTGGACACTGAACCACTTTTATCCAT
TTGAAAAGTGTCAAATGGTGGGACGAATTTTATATATATATATATGGACTATATGACATG
ATGTCTCTGGAGCTGTGCTGTTCTATACAGTCGCCATTAGACACATGGTGTTCACTCCAA
TTAATAAAATACAATATTCAGCTCCACAGTCATGCTGGCTGCATGTGGCCAGTGGCTTGG
ATGGCACAGATGTACGACATCTCCATTACAGAAAATTATGTAGGACAGCACCATGTCAGG
AGTGCTCATGTGAACATTTTAGAAGCCAGGATCATGAATTCCAATTATGAGCCTAAAAGC
AGACATGTAGACTATATCATAATGATGACTATTTCAGGTGGGAAGAGGAAGTTGAGGACC
TGTTTCCAAGAGTCTAAGATCCAATTTCTAAGTTCTTTGTTTTCAGTCTTAGGTGCCCTT
CACAACATTCACTGTCCCTACGAGGTAATCAAAAAAGAGCACAACTCGAGGTTAAGGTCC
CAAAGCTTGTGATGGATGAGCTTTGGAAAAAGTGAATGCGCATGGATTTTTTAGCACACA
GGCTCTAGACATGTATGTGTAGGTTAACTCAACCACTGGAGATGTCTTCGAACAAAGGTA
TAGCTTTTCAGATTAATGATTGCATCAGGAAATAATTAGAAGGTGATATTTTTAAAATTT
TAGCAATGCTCTGAAGGATTCTTCTAAATCTGTCATCATAATGAAAAAAAAGTCATTCCC
CACAGTGCTGTCCTCAAGGACAAGTGTGGTTATAAGGGAACAGCATGTTTGGAGAGATTG
CTCTAATTCATAGTCATGTGTAATTCTAACAGCCAGAATTCCACAAGTGACCCTCGATGA
CTTTGTATATCCTACCCCTATGAGTGTGTGTAGAACCTGTGATTATGACCCATAATTATG
TTATGTTATACATTAAAAGACAGATTATCCGGGGATGGCTAATCTGACCATGTGAGCTCT
GTATAAGCAGAGAGTTTTCTCAGGCTGTTTAGCAGAAGTCAGAGATTCAAAGCAGGACTT
AAGGCACCAAGGCTGGTTTAAAATGAGGGTGGCCACATGAGAAGAAATGCAGTTCTTAAG
GAAGTGAGAGGCCCCAGCTGGCAGCCAAGGGGATGGAAATGGCAGTCCTGCAGCCACAGG
AACTGAATTCAGCCAACAACCAGAAGAAGTTTGCAGGTGGACCCTCTGGAGCAGCTAAGA
GCCCCAGCCCTGCTAGCACCTGGATTCCAGCCTTGTGAGAGCTCGGTCATGCCTGCCTGG
ACTCCTGGCCTACAGAGCTGTCAAATAATAAATGGGTGTTGTTTTAAGCTTTTAAATTTT
GCCGTGATTTTATGCAGCAATATAAAATGAATACATTAAAGCAGTGACGAGGAGAAGTCT
TGGTACTTGATTCCCTCTGGCATGCTGGGTATTCCTTGATAAACACATGTCTTACACTAG
CACATCATATACCCAGGCCACATCTGGCATTCTCTGCTGGAGATCTTGACTGATTATTAC
TGGAAGGTTTTTGGCAAAGACTTGCAGTGTCTTAGTAGCATTTCATGAGGGAACTACTAG
CACAAGATTCAGTGGGTAGGGTCCAGAGTGTAAGGAATTGTTTTCCTGGAATGGGTGTCA
CTTTATGTTGATCTAGGCTGTTGCAAGCCTGTCACTGTATTATTTAAGAATGATGAACAG
TGTTATTTTAAATTAGATATTAAGAGGAAAAAAAGTATGTCTTTATGGAGAGATCAAATA
ATCTATTCTGTGTTGAAGGACCTGATTTTTTTTTTTTTACCAAAAGCTTACTTTATTATC
TAAGCACAGATCAAATCCTATACATGCTAACCAAATTTTTGTACCTTGGATATATTTTCC
AAAATACTTCTCTGCTTCCAAGCTATTAATTGCTAATGAAGTTTTAATTTTGGTTTTTCC
ATTACTTTATGTGCTTTTAACCACATAGCCTTGATGAAAGAAAGGTTGAGCTAAAAGAAG
GAAAATGAGAGGCTAAGACTGTCAAAAGGCCATAAATTGAAGTCATAATCAAATCTGAGG
GTCCTAAGGGAACTCAGACATCTGATCTCTTTTCTTTAAAGAGGAAACTTTTCCCAGCTA
TGTAGCAGTGTTTGTAGCATGTAGAATTCAGTTTGATAGTTGTAAACTTTTAATTATTAA
TCTTAACAGATATGTGCCATGATAATATGCTTACTTTATTTCTTCAATGCATGTGAACCT
ACAGTGCTGAAGAGACCCCACCACAGTATTACTTAA
|
|
40-1574, gnl|bosTau2|chr11 (3996830-3998362) |
|
40-1574, gnl|Hg17|chr2 (98697608-98696030) |
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40-1574, gnl|Mm7|chr1 (37683927-37682544) |
| |
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1587-1934, gnl|bosTau2|chr11 (3999662-4000009) |
|
1587-1934, gnl|Hg17|chr2 (98696017-98695641) |
| |
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1968-2241, gnl|bosTau2|chr11 (4000008-4000273) |
|
1968-2241, gnl|Hg17|chr2 (98695642-98695316) |
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1968-2241, gnl|Mm7|chr1 (37681929-37681694) |
| |
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2262-2436, gnl|bosTau2|chr11 (4000265-4000437) |
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2262-2436, gnl|canFam2|chr10 (47179575-47179221) |
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2262-2436, gnl|dasNov1|scaffold_7579 (15086-15564) |
|
2262-2436, gnl|echTel1|scaffold_300865 (1110-774) |
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2262-2436, gnl|hg17|chr2 (98695115-98695462) |
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2262-2436, gnl|Hg17|chr2 (98695324-98695162) |
|
2262-2436, gnl|loxAfr1|scaffold_14546 (4266-3921) |
|
2262-2436, gnl|mm7|chr1 (37681467-37681807) |
|
2262-2436, gnl|Mm7|chr1 (37681699-37681536) |
|
2262-2436, gnl|monDom2|scaffold_11 (14469175-14469461) |
|
2262-2436, gnl|oryCun1|scaffold_201464 (31689-31340) |
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2262-2436, gnl|panTro1|chr12 (101405481-101405828) |
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2262-2436, gnl|rheMac2|chr13 (98510131-98510474) |
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2262-2436, gnl|rn3|chr9 (36386288-36386635) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
40-1574, gnl|bosTau2|chr11 (3996830-3998362) |
|
40-1574, gnl|Hg17|chr2 (98697608-98696030) |
|
40-1574, gnl|Mm7|chr1 (37683927-37682544) |
| |
|
1587-1934, gnl|bosTau2|chr11 (3999662-4000009) |
|
1587-1934, gnl|Hg17|chr2 (98696017-98695641) |
| |
|
1968-2241, gnl|bosTau2|chr11 (4000008-4000273) |
|
1968-2241, gnl|Hg17|chr2 (98695642-98695316) |
|
1968-2241, gnl|Mm7|chr1 (37681929-37681694) |
| |
|
2262-2436, gnl|bosTau2|chr11 (4000265-4000437) |
|
2262-2436, gnl|canFam2|chr10 (47179575-47179221) |
|
2262-2436, gnl|dasNov1|scaffold_7579 (15086-15564) |
|
2262-2436, gnl|echTel1|scaffold_300865 (1110-774) |
|
2262-2436, gnl|hg17|chr2 (98695115-98695462) |
|
2262-2436, gnl|Hg17|chr2 (98695324-98695162) |
|
2262-2436, gnl|loxAfr1|scaffold_14546 (4266-3921) |
|
2262-2436, gnl|mm7|chr1 (37681467-37681807) |
|
2262-2436, gnl|Mm7|chr1 (37681699-37681536) |
|
2262-2436, gnl|monDom2|scaffold_11 (14469175-14469461) |
|
2262-2436, gnl|oryCun1|scaffold_201464 (31689-31340) |
|
2262-2436, gnl|panTro1|chr12 (101405481-101405828) |
|
2262-2436, gnl|rheMac2|chr13 (98510131-98510474) |
|
2262-2436, gnl|rn3|chr9 (36386288-36386635) |
|
spl (0.715922) |
|
thg (0.380373) |
|
sin (0.349895) |
|
cut (0.339847) |
|
liv (0.292569) |
|
pty (0.285429) |
|
csk (0.281492) |
|
col (0.195008) |
|
sag (0.182715) |
|
fty (0.17584) |
|
duo (0.172801) |
|
lyg (0.133103) |
|
cov (0.132153) |
|
kid (0.129735) |
|
bla (0.124347) |
|
tra (0.123092) |
|
ebs (0.118301) |
|
med (0.116252) |
|
nbm (0.0993246) |
|
jej (0.0989218) |
|
spl (0.715922) |
|
thg (0.380373) |
|
sin (0.349895) |
|
cut (0.339847) |
|
liv (0.292569) |
|
pty (0.285429) |
|
csk (0.281492) |
|
col (0.195008) |
|
sag (0.182715) |
|
fty (0.17584) |
|
duo (0.172801) |
|
lyg (0.133103) |
|
cov (0.132153) |
|
kid (0.129735) |
|
bla (0.124347) |
|
tra (0.123092) |
|
ebs (0.118301) |
|
med (0.116252) |
|
nbm (0.0993246) |
|
jej (0.0989218) |
