Non-Coding RNA Search

Ss1.1-Pig4-TMW8037F03.5

Sequence:


               
               CCCCTAGCCTGGGAACCTCCATATGCCTCGGGAGCGGCCCAAGAAATAGCTAAAAAAGAC
AAAATAAATAAATAAATAAATAAATGGGAGCAAAGGCCATCTCTGAAAAGTTAAAACAGG
CCAGAAATGGCACTTGCCCTTAAAAATAACCTGTAGGCTATAGAATAGAGTTAATTGTCC
CTTACAGTTAGGGAATGTTTAGGGCAAGTGAAAACTTTCAGATAATATTAGCTATTTTTG
ATGATAATCTTTCTAAACATACAATGTACTTCCTCAGTTATCAAGTACGTTCATCGTAAT
TTAAGATTTTTTACTGATCAGTTAAATTCTATGGCAGTTGTAGTTTGTGGGATGTGAAAT
TAGAAGGATATGCATCCTAGGAGATAACCAGGAAAATACAATTCATAAAGTCATTTACTT
GTCCCTAACACAAGTTTAGTGATATATAACTGTTGAACCTATAGACAGTATGACATTGCT
GCCTTTCTGCAAAATAAATTATTGAATCAGTGGTTGAAATATTGTTTTCTTCAGTGGATT
TTCTTCATAAAATCATCTTTATTGTAATCTGTGTTTCTTGACTTGTCATCAACATTGAGA
GCATTTTCTTTTCGTTTTCTCTCATAAACTTAATGAGCCACATCTATTTCTTGGTCAGTT
GTAAGTCATTCTTCTATTCTGCTTGGATTGTTCATTTTAAGTGAAGGAGGCATAGCCTTT
AATGTTCAGGCAAACATTTAAAAAAATAATGATGGAGTATATCTAATTGTAGAGCTGATA
AATTCTCTAACATGATAAATTCCAGCAAACAAGGTTAAGTAGTTAAACGGGAGATTAAAC
AGTTTTAGTAAATACTTGATTTTATCTGAGGTCTAGGTATATCAATACACTGAAACCACA
TAGTGGGAGTTCTCCTGTGATTCAAGTGGATTGAGGATCAGGCGTTGTCACTGCAGGGTC
TTGGGTTGCTGCTGTGGCACAAGTTTGTTCCCTGGTGAGGGAACTTCCACATGGCATGGG
CATGGCCAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCCTAGCCTGGGAACCTCCATATGCCTCGGGAGCGGCCCAAGAAATAGCTAAAAAAGAC
AAAATAAATAAATAAATAAATAAATGGGAGCAAAGGCCATCTCTGAAAAGTTAAAACAGG
CCAGAAATGGCACTTGCCCTTAAAAATAACCTGTAGGCTATAGAATAGAGTTAATTGTCC
CTTACAGTTAGGGAATGTTTAGGGCAAGTGAAAACTTTCAGATAATATTAGCTATTTTTG
ATGATAATCTTTCTAAACATACAATGTACTTCCTCAGTTATCAAGTACGTTCATCGTAAT
TTAAGATTTTTTACTGATCAGTTAAATTCTATGGCAGTTGTAGTTTGTGGGATGTGAAAT
TAGAAGGATATGCATCCTAGGAGATAACCAGGAAAATACAATTCATAAAGTCATTTACTT
GTCCCTAACACAAGTTTAGTGATATATAACTGTTGAACCTATAGACAGTATGACATTGCT
GCCTTTCTGCAAAATAAATTATTGAATCAGTGGTTGAAATATTGTTTTCTTCAGTGGATT
TTCTTCATAAAATCATCTTTATTGTAATCTGTGTTTCTTGACTTGTCATCAACATTGAGA
GCATTTTCTTTTCGTTTTCTCTCATAAACTTAATGAGCCACATCTATTTCTTGGTCAGTT
GTAAGTCATTCTTCTATTCTGCTTGGATTGTTCATTTTAAGTGAAGGAGGCATAGCCTTT
AATGTTCAGGCAAACATTTAAAAAAATAATGATGGAGTATATCTAATTGTAGAGCTGATA
AATTCTCTAACATGATAAATTCCAGCAAACAAGGTTAAGTAGTTAAACGGGAGATTAAAC
AGTTTTAGTAAATACTTGATTTTATCTGAGGTCTAGGTATATCAATACACTGAAACCACA
TAGTGGGAGTTCTCCTGTGATTCAAGTGGATTGAGGATCAGGCGTTGTCACTGCAGGGTC
TTGGGTTGCTGCTGTGGCACAAGTTTGTTCCCTGGTGAGGGAACTTCCACATGGCATGGG
CATGGCCAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               175-798, gnl|bosTau2|chr4 (59661119-59660505)
               

               
               175-798, gnl|Hg17|chr7 (138506438-138507035)
               

               
               175-798, gnl|Mm7|chr6 (38487147-38488064)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               175-798, gnl|bosTau2|chr4 (59661119-59660505)
               

               
               175-798, gnl|Hg17|chr7 (138506438-138507035)
               

               
               175-798, gnl|Mm7|chr6 (38487147-38488064)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

Help | Less info


               
               cte (0.29274)
               

               
               pgl (0.236967)
               

               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               liv (0.146284)
               

               
               cbl (0.114797)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)
               

               
               pgl (0.236967)
               

               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               liv (0.146284)
               

               
               cbl (0.114797)

	175-798, gnl\|bosTau2\|chr4 (59661119-59660505)
	175-798, gnl\|Hg17\|chr7 (138506438-138507035)
	175-798, gnl\|Mm7\|chr6 (38487147-38488064)

	cte (0.29274)
	pgl (0.236967)
	cmu (0.186393)
	sag (0.182715)
	liv (0.146284)
	cbl (0.114797)