Non-Coding RNA Search

Ss1.1-Pig4-TMW8037F14.3

Sequence:


               
               CTCTTAGATCAGCACGTCCTGAGATAATAAATCACATAGTAACCTTGTGCCGAGATTCTG
ACCTCCCCTCCCTGGGATGTTCCTGCTGTGCTTCCAGTGACAATACAATTCACACCAAAA
ATACCGTGTCCACAGAATTGTAAAGGATGTGGTTTAGAGTGTGCCTCTCTGAGTATGAAA
ATTCACATGATTAGTGTGAATTTGGGGTGTGTGTAATTAACTGGGTTTCTTTGCCATTTT
TGTATTTTGGCTGGTGCCAAAATAGCGCCTTCTCTGTACATTTTCCACTTATGTTTTCTA
ACTTGTCCTAAAATATCAAGGGAAAAAGTACCAAAGTTCATGTAGGAAATAATGGCAGCA
CAGGTCATTTTTCAGTCACGTAGATGTGAAAATAAGGTTGCTTAACTTTGTTGTTTAGCT
GAGGTTTTTTTTTTCTCCTTGTACAATTATATTTAAACATTTTTGTAGTGGCTCTCTGGT
TTCTGAGTTCTTAGAGGCTTGATCTGTTGTGATTGTTTATTTAGTTGATGGTTTTTTGTA
ATATTCATTATTGTTTATATGTACACAGTTTAGTCTCATTGATTTCAAATGCATTTTGTT
ATGGCTGAACCGAACTGGCACCCCTGTTGGCTTGAGGGAACTGTCATAGCTTTTATTCAC
CATGGCTGAAGGCACTGCCACAGTCTTTAGCCTTAAAGAGCTTTCACTAACCACTGACAG
CTCCATGGGCATCAGGTGCAGAACCCTGGGGCACGCAGGTTGCAAAGTGCGAGCGTCCAT
AGCTGCCCTGGCTGGGTGGGATCTTGGGTTGACAGGGTAGAATATGAAGTGAAACACTTC
ACATGAAAGTAAGGTAGCTTGGGGTCCTTAATTCTGGCTCCAAATATCTCATGAGTACAT
CAAGGTCAGTGATCAGGACCAAGGAACTTCTATGACTCACAGAAAGGGAGACTGCTTCCT
GGAACTGGCCCTACAGGTCCTGGCCCACTGCAGCTTCTGCACCAGCACCGATGGCCTTGG
CGAGGAAAGTGCATGGACCGAGGCTAAGTTGGCAAAGAACCTTGTATTGCCAATGGGGCG
GGTTTCCCTGGCCTGTGCCTGGTTAACAGGCTCTTCATCTTTGGTGCCCAGATGTTTTAT
TGCTTAATTTTGTCATCATTGTATTTCATAGAAACTGTTGATAGGGCCTAAAACCCTGCA
GAAATTCTGTCTGTAAAAACCAACAGATATATTGGCCTTATGCGAATGTAGAAATTGTTT
TGTTTAGTAGATAACTTTAAATTTAAATGCTTTTAATGATAGTGTTCCTTTTTCTTATTA
AGTTGGGGTTTTTTTTAGAATTTGTAATAAATAAAAACTGCTGCTGCTTTTCCACTGTAA
AATATGCTTTCTAATGTGACCCTGTCTTTTTAAAATAAATTTTAATATTACTTATAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCTTAGATCAGCACGTCCTGAGATAATAAATCACATAGTAACCTTGTGCCGAGATTCTG
ACCTCCCCTCCCTGGGATGTTCCTGCTGTGCTTCCAGTGACAATACAATTCACACCAAAA
ATACCGTGTCCACAGAATTGTAAAGGATGTGGTTTAGAGTGTGCCTCTCTGAGTATGAAA
ATTCACATGATTAGTGTGAATTTGGGGTGTGTGTAATTAACTGGGTTTCTTTGCCATTTT
TGTATTTTGGCTGGTGCCAAAATAGCGCCTTCTCTGTACATTTTCCACTTATGTTTTCTA
ACTTGTCCTAAAATATCAAGGGAAAAAGTACCAAAGTTCATGTAGGAAATAATGGCAGCA
CAGGTCATTTTTCAGTCACGTAGATGTGAAAATAAGGTTGCTTAACTTTGTTGTTTAGCT
GAGGTTTTTTTTTTCTCCTTGTACAATTATATTTAAACATTTTTGTAGTGGCTCTCTGGT
TTCTGAGTTCTTAGAGGCTTGATCTGTTGTGATTGTTTATTTAGTTGATGGTTTTTTGTA
ATATTCATTATTGTTTATATGTACACAGTTTAGTCTCATTGATTTCAAATGCATTTTGTT
ATGGCTGAACCGAACTGGCACCCCTGTTGGCTTGAGGGAACTGTCATAGCTTTTATTCAC
CATGGCTGAAGGCACTGCCACAGTCTTTAGCCTTAAAGAGCTTTCACTAACCACTGACAG
CTCCATGGGCATCAGGTGCAGAACCCTGGGGCACGCAGGTTGCAAAGTGCGAGCGTCCAT
AGCTGCCCTGGCTGGGTGGGATCTTGGGTTGACAGGGTAGAATATGAAGTGAAACACTTC
ACATGAAAGTAAGGTAGCTTGGGGTCCTTAATTCTGGCTCCAAATATCTCATGAGTACAT
CAAGGTCAGTGATCAGGACCAAGGAACTTCTATGACTCACAGAAAGGGAGACTGCTTCCT
GGAACTGGCCCTACAGGTCCTGGCCCACTGCAGCTTCTGCACCAGCACCGATGGCCTTGG
CGAGGAAAGTGCATGGACCGAGGCTAAGTTGGCAAAGAACCTTGTATTGCCAATGGGGCG
GGTTTCCCTGGCCTGTGCCTGGTTAACAGGCTCTTCATCTTTGGTGCCCAGATGTTTTAT
TGCTTAATTTTGTCATCATTGTATTTCATAGAAACTGTTGATAGGGCCTAAAACCCTGCA
GAAATTCTGTCTGTAAAAACCAACAGATATATTGGCCTTATGCGAATGTAGAAATTGTTT
TGTTTAGTAGATAACTTTAAATTTAAATGCTTTTAATGATAGTGTTCCTTTTTCTTATTA
AGTTGGGGTTTTTTTTAGAATTTGTAATAAATAAAAACTGCTGCTGCTTTTCCACTGTAA
AATATGCTTTCTAATGTGACCCTGTCTTTTTAAAATAAATTTTAATATTACTTATAAAAA
AAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               411-1435, gnl|bosTau2|chr27 (11517417-11516399)
               

               
               411-1435, gnl|Hg17|chr8 (17471326-17472345)
               

               
               411-1435, gnl|Mm7|chr8 (39704745-39705759)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               411-1435, gnl|bosTau2|chr27 (11517417-11516399)
               

               
               411-1435, gnl|Hg17|chr8 (17471326-17472345)
               

               
               411-1435, gnl|Mm7|chr8 (39704745-39705759)

Expressed library(ies): 11 entry(ies)

More info

Expressed library(ies): 11 entry(ies)

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               spc (0.566829)
               

               
               sme (0.305437)
               

               
               lun (0.300978)
               

               
               aor (0.195274)
               

               
               cmu (0.186393)
               

               
               fbs (0.175346)
               

               
               eli (0.151814)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               jca (0.11396)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spc (0.566829)
               

               
               sme (0.305437)
               

               
               lun (0.300978)
               

               
               aor (0.195274)
               

               
               cmu (0.186393)
               

               
               fbs (0.175346)
               

               
               eli (0.151814)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               jca (0.11396)

	411-1435, gnl\|bosTau2\|chr27 (11517417-11516399)
	411-1435, gnl\|Hg17\|chr8 (17471326-17472345)
	411-1435, gnl\|Mm7\|chr8 (39704745-39705759)

	spc (0.566829)
	sme (0.305437)
	lun (0.300978)
	aor (0.195274)
	cmu (0.186393)
	fbs (0.175346)
	eli (0.151814)
	sug (0.127291)
	tra (0.123092)
	eep (0.122564)
	jca (0.11396)