Ss1.1-Pig4-TMW8037G01.3
|
CGCCCCCGCCAGCGCCCGGCTCAGCGCCGCCGCCCCTCCTCGCCTGCTCGCCGCGCGATG
GCCTCGCTGCGAGCGGAGCGCGCCGCCGGGGGCCCGCGGCTCCCCGCGACCCGCGCCGGG
CGACCGGCAGCGCTCCGCCTCCTCCTGCTGCTGGGCGCTGTCCTGAAGCCCCAGGAGTCC
CTGGCTCAGCATTTTCCCACCCCAGATTACTTAAATTTAGAAGGGAAAACACTGGAGGAG
AACTATGAGACAGATGCCCAACTTTGCTGGCACGATTATAAGGATTATATGGACTCTATC
AAAAAGGATTGGTGTGACTGGGCCCTGATTAGCAGGCCTTATAGCATCCTTCAAGAATGC
CTGGAACAGAAAGCAGATGCGTTCAAGCTGGGCTTCCCCAATCCCTGGGCAGAACGGATC
ATCTTTGAGGCTCACCGGATCCACTTTGCCAACTGCTCCCTGGTGCAGCCCACCTTCTCA
GACCCCCCAGAGGATGTGCTCCTGGCCATGATCATGGTCCCCATCTGCCTCATCCCCTTC
CTCGTCACCCTCGTGGTATGGAGGAGTAAAGACCCTGAAGCCCAGACCTAGGGTGGCGTG
AGCTCTTCAGTAGCCATCTTCCTCCTTCCCTCTGCCACCACCAGGTCTCTCTCCTCCCCT
CCCGACTTCCTTCCCTCACTCCCACCCCAACCGCAGAGCCTTAGATTGGTGGAAATGGAA
GCTGGGTGGTGTCATGGCACAAGTTCTGTAATCTTGAAAATAAAACTTTTTTTTTTTTTT
AAAAAAAAAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CGCCCCCGCCAGCGCCCGGCTCAGCGCCGCCGCCCCTCCTCGCCTGCTCGCCGCGCGATG
GCCTCGCTGCGAGCGGAGCGCGCCGCCGGGGGCCCGCGGCTCCCCGCGACCCGCGCCGGG
CGACCGGCAGCGCTCCGCCTCCTCCTGCTGCTGGGCGCTGTCCTGAAGCCCCAGGAGTCC
CTGGCTCAGCATTTTCCCACCCCAGATTACTTAAATTTAGAAGGGAAAACACTGGAGGAG
AACTATGAGACAGATGCCCAACTTTGCTGGCACGATTATAAGGATTATATGGACTCTATC
AAAAAGGATTGGTGTGACTGGGCCCTGATTAGCAGGCCTTATAGCATCCTTCAAGAATGC
CTGGAACAGAAAGCAGATGCGTTCAAGCTGGGCTTCCCCAATCCCTGGGCAGAACGGATC
ATCTTTGAGGCTCACCGGATCCACTTTGCCAACTGCTCCCTGGTGCAGCCCACCTTCTCA
GACCCCCCAGAGGATGTGCTCCTGGCCATGATCATGGTCCCCATCTGCCTCATCCCCTTC
CTCGTCACCCTCGTGGTATGGAGGAGTAAAGACCCTGAAGCCCAGACCTAGGGTGGCGTG
AGCTCTTCAGTAGCCATCTTCCTCCTTCCCTCTGCCACCACCAGGTCTCTCTCCTCCCCT
CCCGACTTCCTTCCCTCACTCCCACCCCAACCGCAGAGCCTTAGATTGGTGGAAATGGAA
GCTGGGTGGTGTCATGGCACAAGTTCTGTAATCTTGAAAATAAAACTTTTTTTTTTTTTT
AAAAAAAAAAAAAAAAAAAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
2-185, gnl|bosTau2|chr19 (38967336-38967154) |
|
2-185, gnl|canFam2|chr9 (23570731-23570201) |
|
2-185, gnl|dasNov1|scaffold_7434 (17946-17444) |
|
2-185, gnl|hg17|chr17 (38166371-38166889) |
|
2-185, gnl|Hg17|chr17 (38166748-38166929) |
|
2-185, gnl|mm7|chr11 (101355102-101355577) |
|
2-185, gnl|Mm7|chr11 (101355432-101355635) |
|
2-185, gnl|monDom2|scaffold_18 (53311388-53311990) |
|
2-185, gnl|panTro1|chr19 (41352442-41352960) |
|
2-185, gnl|rheMac2|chr16 (52883595-52884021) |
|
2-185, gnl|rn3|chr10 (90289458-90289933) |
| |
|
334-780, gnl|bosTau2|chr19 (38965996-38965551) |
|
334-780, gnl|Hg17|chr17 (38168139-38168577) |
|
334-780, gnl|Mm7|chr11 (101356848-101357281) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
2-185, gnl|bosTau2|chr19 (38967336-38967154) |
|
2-185, gnl|canFam2|chr9 (23570731-23570201) |
|
2-185, gnl|dasNov1|scaffold_7434 (17946-17444) |
|
2-185, gnl|hg17|chr17 (38166371-38166889) |
|
2-185, gnl|Hg17|chr17 (38166748-38166929) |
|
2-185, gnl|mm7|chr11 (101355102-101355577) |
|
2-185, gnl|Mm7|chr11 (101355432-101355635) |
|
2-185, gnl|monDom2|scaffold_18 (53311388-53311990) |
|
2-185, gnl|panTro1|chr19 (41352442-41352960) |
|
2-185, gnl|rheMac2|chr16 (52883595-52884021) |
|
2-185, gnl|rn3|chr10 (90289458-90289933) |
| |
|
334-780, gnl|bosTau2|chr19 (38965996-38965551) |
|
334-780, gnl|Hg17|chr17 (38168139-38168577) |
|
334-780, gnl|Mm7|chr11 (101356848-101357281) |
|
nlu (0.575043) |
|
jca (0.45584) |
|
cly (0.361925) |
|
fbs (0.350693) |
|
hyp (0.285673) |
|
ese (0.253004) |
|
eep (0.245128) |
|
jej (0.197844) |
|
cut (0.169924) |
|
fhi (0.169578) |
|
nje (0.16592) |
|
cag (0.151194) |
|
pty (0.142714) |
|
lnt (0.142308) |
|
hlv (0.139256) |
|
pla (0.133672) |
|
nmm (0.132802) |
|
ute (0.132784) |
|
cov (0.132153) |
|
eru (0.120048) |
|
clu (0.119646) |
|
eje (0.0988338) |
|
nlu (0.575043) |
|
jca (0.45584) |
|
cly (0.361925) |
|
fbs (0.350693) |
|
hyp (0.285673) |
|
ese (0.253004) |
|
eep (0.245128) |
|
jej (0.197844) |
|
cut (0.169924) |
|
fhi (0.169578) |
|
nje (0.16592) |
|
cag (0.151194) |
|
pty (0.142714) |
|
lnt (0.142308) |
|
hlv (0.139256) |
|
pla (0.133672) |
|
nmm (0.132802) |
|
ute (0.132784) |
|
cov (0.132153) |
|
eru (0.120048) |
|
clu (0.119646) |
|
eje (0.0988338) |
