Non-Coding RNA Search

Ss1.1-Pig4-TMW8037G10.3

Sequence:


               
               GGCTACTCGTATGAGTGTGTCCTGAGAGCCATGAAGAAGAAAGGAGAGAATATCGAGCAG
ATTCTCGACTATCTCTTTGCACATGGACAGCTCTGTGAGAAAGGCTTCGACCCTCTTTTA
GTGGAAGAGGCTCTGGAAATGCATCAGTGTTCAGAGGAAAAGATGATGGAGTTTCTTCAG
TTAATGAGCAAATTTAAGGAAATGGGCTTTGAACTGAAAGACATTAAGGAAGTTCTGCTC
CTACACAACAATGACCAGGACAATGCTTTGGAAGACCTCATGGCTCGGGCGGGAGCCAGC
TGAGATAGGCCTTGCCTAGGCCCTGCCACGGAACCACCCCTGCCAGAGGCCCTGAGCAGC
CCATCTGTGGGGAAGGAGAAGGGGTACACTTCTGGATTTTCTTTTGGGGGTGGAAGGTCA
GGTGTGGAGACGGTGCTCGCCAGGTCTCTATGAGCCGAGGCCCTGAGCTGGGGAGAAAGT
GGGAAAGATTTGGGCAGGCTCATGTGCCCAGAACTGTCCTGGCTCCTTCCATATTAAATG
TATTTGTATTTTGAGAAGTGTCCTTCCCACCTTGGCCCTCCAGAGAGACTTCTCTGGTCT
TTCTGGGGTCTGTTTGGCCTCAACCGGAACCCACCCCAGCTGCCAGAAGGAGCTGGGGAG
AAGGGGTGGGAGGGCCAGACTCAGTGCTGCTTCGGGGCTAGATGTTTTCCTCCTCTGCAA
GGGTGGACTGACCTCTAATCCAGGTTGAGTGCAATTGAGAGGTTCTTCCAGGGTTTTGTT
TTTTTCCCCCTTCATGTCACTTAGTGTTACACTGGTTCTGCAATGTCTCTGAGGTGCAAA
GAATGCCCTTTCCCCTTGGGGCCCTAGTTTGCCTTTTCTGCTAGGCAATTGCATTACTTT
CCTGCCCCAGCCTGTTTCTTTTGGTCTGGTTGAGACCACAGTCGTTTGCTACCCAGGATT
TTAGAGCCCCCTTGTTCTAGGAACAGTTGTCATTTTAAGAAATCATTGGCCCCTTCCCAG
TGCATCAAGTGGGGAAGAAAAAAACAGGCGGTGATTTGGTCACTCAGCACTAACTCCACC
TCAGTTCTCCCTGGAGAACAGCCTCTCCCTCCAGCCCTTTGCTCTAGGATGACACAGTAA
CACCTAGTCATAGAAATCCGTCTCTTTGTTTTGTATTATGTTGTACATCATTAAAGATCT
AAATACAGAGGATATACAGTCTTGATGAATCTAATGTAATTTGCTAACTATTTTCATTCT
TCAGAGAGAACTACTAATAAAAATCTAAAAGGTAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCTACTCGTATGAGTGTGTCCTGAGAGCCATGAAGAAGAAAGGAGAGAATATCGAGCAG
ATTCTCGACTATCTCTTTGCACATGGACAGCTCTGTGAGAAAGGCTTCGACCCTCTTTTA
GTGGAAGAGGCTCTGGAAATGCATCAGTGTTCAGAGGAAAAGATGATGGAGTTTCTTCAG
TTAATGAGCAAATTTAAGGAAATGGGCTTTGAACTGAAAGACATTAAGGAAGTTCTGCTC
CTACACAACAATGACCAGGACAATGCTTTGGAAGACCTCATGGCTCGGGCGGGAGCCAGC
TGAGATAGGCCTTGCCTAGGCCCTGCCACGGAACCACCCCTGCCAGAGGCCCTGAGCAGC
CCATCTGTGGGGAAGGAGAAGGGGTACACTTCTGGATTTTCTTTTGGGGGTGGAAGGTCA
GGTGTGGAGACGGTGCTCGCCAGGTCTCTATGAGCCGAGGCCCTGAGCTGGGGAGAAAGT
GGGAAAGATTTGGGCAGGCTCATGTGCCCAGAACTGTCCTGGCTCCTTCCATATTAAATG
TATTTGTATTTTGAGAAGTGTCCTTCCCACCTTGGCCCTCCAGAGAGACTTCTCTGGTCT
TTCTGGGGTCTGTTTGGCCTCAACCGGAACCCACCCCAGCTGCCAGAAGGAGCTGGGGAG
AAGGGGTGGGAGGGCCAGACTCAGTGCTGCTTCGGGGCTAGATGTTTTCCTCCTCTGCAA
GGGTGGACTGACCTCTAATCCAGGTTGAGTGCAATTGAGAGGTTCTTCCAGGGTTTTGTT
TTTTTCCCCCTTCATGTCACTTAGTGTTACACTGGTTCTGCAATGTCTCTGAGGTGCAAA
GAATGCCCTTTCCCCTTGGGGCCCTAGTTTGCCTTTTCTGCTAGGCAATTGCATTACTTT
CCTGCCCCAGCCTGTTTCTTTTGGTCTGGTTGAGACCACAGTCGTTTGCTACCCAGGATT
TTAGAGCCCCCTTGTTCTAGGAACAGTTGTCATTTTAAGAAATCATTGGCCCCTTCCCAG
TGCATCAAGTGGGGAAGAAAAAAACAGGCGGTGATTTGGTCACTCAGCACTAACTCCACC
TCAGTTCTCCCTGGAGAACAGCCTCTCCCTCCAGCCCTTTGCTCTAGGATGACACAGTAA
CACCTAGTCATAGAAATCCGTCTCTTTGTTTTGTATTATGTTGTACATCATTAAAGATCT
AAATACAGAGGATATACAGTCTTGATGAATCTAATGTAATTTGCTAACTATTTTCATTCT
TCAGAGAGAACTACTAATAAAAATCTAAAAGGTAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|55633123|ref|XP_520539.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55633123|ref|XP_520539.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               515-672, - strand, RNAz p=0.999786
               

               
               783-976, - strand, RNAz p=0.998854

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               515-672, - strand, RNAz p=0.999786
               

               
               783-976, - strand, RNAz p=0.998854

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               161-1294, gnl|bosTau2|chr8 (41057209-41058352)
               

               
               161-1294, gnl|Hg17|chr9 (34241388-34242521)
               

               
               161-1294, gnl|Mm7|chr4 (41527142-41528229)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               161-1294, gnl|bosTau2|chr8 (41057209-41058352)
               

               
               161-1294, gnl|Hg17|chr9 (34241388-34242521)
               

               
               161-1294, gnl|Mm7|chr4 (41527142-41528229)

Expressed library(ies): 16 entry(ies)

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Expressed library(ies): 16 entry(ies)

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               ssp (0.271039)
               

               
               hea (0.204499)
               

               
               nep (0.183925)
               

               
               ton (0.1755)
               

               
               sin (0.174948)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               ldo (0.0970026)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ssp (0.271039)
               

               
               hea (0.204499)
               

               
               nep (0.183925)
               

               
               ton (0.1755)
               

               
               sin (0.174948)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               ldo (0.0970026)

	515-672, - strand, RNAz p=0.999786
	783-976, - strand, RNAz p=0.998854

	161-1294, gnl\|bosTau2\|chr8 (41057209-41058352)
	161-1294, gnl\|Hg17\|chr9 (34241388-34242521)
	161-1294, gnl\|Mm7\|chr4 (41527142-41528229)

	ssp (0.271039)
	hea (0.204499)
	nep (0.183925)
	ton (0.1755)
	sin (0.174948)
	fhi (0.169578)
	nje (0.16592)
	cag (0.151194)
	hyp (0.142837)
	pty (0.142714)
	cst (0.140036)
	hlv (0.139256)
	bla (0.124347)
	eru (0.120048)
	med (0.116252)
	ldo (0.0970026)