Non-Coding RNA Search

Ss1.1-Pig4-TMW8037G13.3

Sequence:


               
               GGAAATACGGATTAGGAACTGGGCTCCACCTTCCCCCGGTACCTGTGGGCCTTGGCCCTC
TCTGCCCCTCAAGCTGTAGAAGTGCAGTCTTTTGAGCAATGTTTTCAGGCCCAGCCTGTG
CAGGGGGAAAGCTAGAGCTTGGGCAGGCTCTCTGGCTGAGGGAGCAGAGAGCCCAGGGCT
TCTGTCTCCCTGGGGGTGTTAGATATGTTCCACTCTGATTTGCTTCGTGCTTATGGGGAG
AGGGGAGGTCTTCCAGAGGCAGGGCCTCTGAAGCCCAAGTCTGAATAGCTCTGGGGGATG
ACTTGGGCCGGACTGCGTGCATGTGCATCCCAAGGCCATGGCAGGGGTGCCAGGGCAAGG
CTGGAGAGCAAGCCCATGAGATATGGAAAAATCCCTGGCAGCCTTGCTGATGTGGAATTT
TCCCCATTCCAGAGTCACCCAGTAATGGCGGGGGCAGTGGGGCTCTGATGCGGCTTATGC
CCCACTGGGTGGCCAGCTGGTTTTGCACTGCTCACAGCTGGAGCTGAGCATTTCCAATTC
CAGACCAGCATTAGTCCCCATCCTTGGCCCTGCATCTCTGGAGAGAAAGAGGGACACCTG
GGACTGGAAAAGGGTCTGGATGGGGCACCTGCATCCTGACGACACTGTGCTCAGCCCTGA
TGGGCCACTGGAGAGGTGGGGTCGGTGGAGCAGCCCCCAAGTGGTGTGAACAGCCCCAAC
TCCTCTCATCCACATTTCAGCTGCCCAAAAATGCTTGTCCTCATTATGCACTGGCTCTGG
AGCCAGAGGCCATTACCTCCCATTGAATAAAAAAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAAATACGGATTAGGAACTGGGCTCCACCTTCCCCCGGTACCTGTGGGCCTTGGCCCTC
TCTGCCCCTCAAGCTGTAGAAGTGCAGTCTTTTGAGCAATGTTTTCAGGCCCAGCCTGTG
CAGGGGGAAAGCTAGAGCTTGGGCAGGCTCTCTGGCTGAGGGAGCAGAGAGCCCAGGGCT
TCTGTCTCCCTGGGGGTGTTAGATATGTTCCACTCTGATTTGCTTCGTGCTTATGGGGAG
AGGGGAGGTCTTCCAGAGGCAGGGCCTCTGAAGCCCAAGTCTGAATAGCTCTGGGGGATG
ACTTGGGCCGGACTGCGTGCATGTGCATCCCAAGGCCATGGCAGGGGTGCCAGGGCAAGG
CTGGAGAGCAAGCCCATGAGATATGGAAAAATCCCTGGCAGCCTTGCTGATGTGGAATTT
TCCCCATTCCAGAGTCACCCAGTAATGGCGGGGGCAGTGGGGCTCTGATGCGGCTTATGC
CCCACTGGGTGGCCAGCTGGTTTTGCACTGCTCACAGCTGGAGCTGAGCATTTCCAATTC
CAGACCAGCATTAGTCCCCATCCTTGGCCCTGCATCTCTGGAGAGAAAGAGGGACACCTG
GGACTGGAAAAGGGTCTGGATGGGGCACCTGCATCCTGACGACACTGTGCTCAGCCCTGA
TGGGCCACTGGAGAGGTGGGGTCGGTGGAGCAGCCCCCAAGTGGTGTGAACAGCCCCAAC
TCCTCTCATCCACATTTCAGCTGCCCAAAAATGCTTGTCCTCATTATGCACTGGCTCTGG
AGCCAGAGGCCATTACCTCCCATTGAATAAAAAAGA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               254-565, + strand, RNAz p=0.991531
               

               
               323-473, - strand, RNAz p=0.954187

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               254-565, + strand, RNAz p=0.991531
               

               
               323-473, - strand, RNAz p=0.954187

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               86-683, gnl|bosTau2|chr17 (42752346-42751764)
               

               
               86-683, gnl|canFam2|chr26 (26684390-26685056)
               

               
               86-683, gnl|dasNov1|scaffold_41359 (10196-9621)
               

               
               86-683, gnl|echTel1|scaffold_115304 (551-4)
               

               
               86-683, gnl|hg17|chr22 (29295471-29296111)
               

               
               86-683, gnl|Hg17|chr22 (29296325-29295670)
               

               
               86-683, gnl|mm7|chr11 (3935424-3934861)
               

               
               86-683, gnl|Mm7|chr11 (3934684-3935235)
               

               
               86-683, gnl|oryCun1|scaffold_203644 (9439-8918)
               

               
               86-683, gnl|panTro1|chr23 (29387386-29388027)
               

               
               86-683, gnl|rheMac2|chr10 (74430283-74430919)
               

               
               86-683, gnl|rn3|chr14 (84655330-84654745)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               86-683, gnl|bosTau2|chr17 (42752346-42751764)
               

               
               86-683, gnl|canFam2|chr26 (26684390-26685056)
               

               
               86-683, gnl|dasNov1|scaffold_41359 (10196-9621)
               

               
               86-683, gnl|echTel1|scaffold_115304 (551-4)
               

               
               86-683, gnl|hg17|chr22 (29295471-29296111)
               

               
               86-683, gnl|Hg17|chr22 (29296325-29295670)
               

               
               86-683, gnl|mm7|chr11 (3935424-3934861)
               

               
               86-683, gnl|Mm7|chr11 (3934684-3935235)
               

               
               86-683, gnl|oryCun1|scaffold_203644 (9439-8918)
               

               
               86-683, gnl|panTro1|chr23 (29387386-29388027)
               

               
               86-683, gnl|rheMac2|chr10 (74430283-74430919)
               

               
               86-683, gnl|rn3|chr14 (84655330-84654745)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fhi (0.169578)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.169578)

	254-565, + strand, RNAz p=0.991531
	323-473, - strand, RNAz p=0.954187

	86-683, gnl\|bosTau2\|chr17 (42752346-42751764)
	86-683, gnl\|canFam2\|chr26 (26684390-26685056)
	86-683, gnl\|dasNov1\|scaffold_41359 (10196-9621)
	86-683, gnl\|echTel1\|scaffold_115304 (551-4)
	86-683, gnl\|hg17\|chr22 (29295471-29296111)
	86-683, gnl\|Hg17\|chr22 (29296325-29295670)
	86-683, gnl\|mm7\|chr11 (3935424-3934861)
	86-683, gnl\|Mm7\|chr11 (3934684-3935235)
	86-683, gnl\|oryCun1\|scaffold_203644 (9439-8918)
	86-683, gnl\|panTro1\|chr23 (29387386-29388027)
	86-683, gnl\|rheMac2\|chr10 (74430283-74430919)
	86-683, gnl\|rn3\|chr14 (84655330-84654745)