Non-Coding RNA Search

Ss1.1-Pig4-TMW8037H04.3

Sequence:


               
               AACAAAATCCTCTTGATGAGCAACACATTTTCCAGCTGCCAATCAGACCAACTGCTATAA
AAAATTTGTATCAAAATGAGAAGCCACAGAAATGGAGAGTGGAAATAAATAGTGGTCAAA
AGAAGGTGAAAACAGTTTGGCAACTGAGTGACAGCCCACCTTTCGACCATCTGAGTTTTC
ATAAACCTGATTTTTCTGAATTAACATTAAACGGTAGCCTGGAAGAAAGGATATCCTTTA
TTAACATGGTTACCTGCAGCCAGGTGCATTTCAAGTGAAGGATGCTGATGGGGCCCTCTG
TAAGCACAAGTCAAAAAAATAAAAAATAAAAAAGGAAAAAAGAAAAGATAATCATCAGAG
AACCTGAAAACAGAAATGTATGTAAATCTTCGAAGCAGAAAAATGAGGACGCCCCTGAAG
AAGATCCTGGAGGTTCTCTGTGAAAGATGCAGCTACAAAACGGATGACCCTGTCTCAGCT
CAGGCTCCGCAGAAGGAGCACCAGGAGAACGGCAGCGATGAGTATACAGAGGGTGCAGAC
TGTAGGCACCACGATCTCGGATACAATCTGCATGTAACTTAGCAAAGGCTCTGCAGTGAG
GGAGAGAACACAGCAGAATAGAATGTGGTCATTGTGGTGAATGTAGCTTCATCCTGAAAA
CTTCAACTGTCTGAAAAAACCTGGAAAATGGCACCATCACACTTTCACATTATTTTAATT
TGGCATAAAAGAGAACCTGGTGAATTAAGTGTTAAAAAAAATTGAGGGCTTTTTAAGATA
TTTCAGAAAATATGAATAAAGGATGCTTAAATCTGATTCTTCCACAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACAAAATCCTCTTGATGAGCAACACATTTTCCAGCTGCCAATCAGACCAACTGCTATAA
AAAATTTGTATCAAAATGAGAAGCCACAGAAATGGAGAGTGGAAATAAATAGTGGTCAAA
AGAAGGTGAAAACAGTTTGGCAACTGAGTGACAGCCCACCTTTCGACCATCTGAGTTTTC
ATAAACCTGATTTTTCTGAATTAACATTAAACGGTAGCCTGGAAGAAAGGATATCCTTTA
TTAACATGGTTACCTGCAGCCAGGTGCATTTCAAGTGAAGGATGCTGATGGGGCCCTCTG
TAAGCACAAGTCAAAAAAATAAAAAATAAAAAAGGAAAAAAGAAAAGATAATCATCAGAG
AACCTGAAAACAGAAATGTATGTAAATCTTCGAAGCAGAAAAATGAGGACGCCCCTGAAG
AAGATCCTGGAGGTTCTCTGTGAAAGATGCAGCTACAAAACGGATGACCCTGTCTCAGCT
CAGGCTCCGCAGAAGGAGCACCAGGAGAACGGCAGCGATGAGTATACAGAGGGTGCAGAC
TGTAGGCACCACGATCTCGGATACAATCTGCATGTAACTTAGCAAAGGCTCTGCAGTGAG
GGAGAGAACACAGCAGAATAGAATGTGGTCATTGTGGTGAATGTAGCTTCATCCTGAAAA
CTTCAACTGTCTGAAAAAACCTGGAAAATGGCACCATCACACTTTCACATTATTTTAATT
TGGCATAAAAGAGAACCTGGTGAATTAAGTGTTAAAAAAAATTGAGGGCTTTTTAAGATA
TTTCAGAAAATATGAATAAAGGATGCTTAAATCTGATTCTTCCACAGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61858938|ref|XP_614706.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61858938|ref|XP_614706.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               77-189, - strand, RNAz p=0.557473

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               77-189, - strand, RNAz p=0.557473

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               77-189, gnl|bosTau2|chr10 (6985768-6985656)
               

               
               77-189, gnl|Hg17|chr15 (64619490-64619602)
               

               
               77-189, gnl|Mm7|chr9 (64172623-64172511)
               


               
               345-822, gnl|bosTau2|chr10 (6980021-6979549)
               

               
               345-822, gnl|Hg17|chr15 (64627770-64628233)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               77-189, gnl|bosTau2|chr10 (6985768-6985656)
               

               
               77-189, gnl|Hg17|chr15 (64619490-64619602)
               

               
               77-189, gnl|Mm7|chr9 (64172623-64172511)
               


               
               345-822, gnl|bosTau2|chr10 (6980021-6979549)
               

               
               345-822, gnl|Hg17|chr15 (64627770-64628233)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               che (0.408942)
               

               
               ova (0.387397)
               

               
               sto (0.179824)
               

               
               cut (0.169924)
               

               
               cje (0.165235)
               

               
               ski (0.146735)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               pla (0.133672)
               

               
               tra (0.123092)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               che (0.408942)
               

               
               ova (0.387397)
               

               
               sto (0.179824)
               

               
               cut (0.169924)
               

               
               cje (0.165235)
               

               
               ski (0.146735)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               pla (0.133672)
               

               
               tra (0.123092)

	77-189, gnl\|bosTau2\|chr10 (6985768-6985656)
	77-189, gnl\|Hg17\|chr15 (64619490-64619602)
	77-189, gnl\|Mm7\|chr9 (64172623-64172511)

	345-822, gnl\|bosTau2\|chr10 (6980021-6979549)
	345-822, gnl\|Hg17\|chr15 (64627770-64628233)

	che (0.408942)
	ova (0.387397)
	sto (0.179824)
	cut (0.169924)
	cje (0.165235)
	ski (0.146735)
	spl (0.143184)
	csk (0.140746)
	pla (0.133672)
	tra (0.123092)