Ss1.1-Pig4-TMW8037H12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCCTCTCGTCCCGCACGAACTTCGATCCCAAACCCGGCCCGGCAGCCTCTTGGGCCCAGG CTCAACCTTGCGCTTGCTGACGTGGGGGCTCCGCCCGACCCTAAACAAAACTGAAAGCCA GGCCCCAAGTGACTTTACCTTCCTGGGGTTGCTAAGGAGGGGTCTGCGAGAGACTGCTTT CCCACGCGTCAGGCCATGCAGGTGGCCATGAGCGGCAGGGCCCGCAAAGAGGCGGTGCAA GCCGCGGCCCGGGAACTCCTCAAGTTTGTGAACCAGAGCCCCTCTCCTTTCCACGCGGTG GCCGAGTGCCGCAGCCGCCTCCTCCAGGCTGGCTTCCGTGAACTCAAGGAGACGGAGAGC TGGGATATCAAGCCGGAGAGTAAGTACTTCCTGACCAGGAATTCCTCCACCATCATCGCT TTTGCTGTGGGAGGCCAGTATGTTCCTGGCAATGGTTTCAGCCTCATCGGGGCCCACACG GACAGCCCCTGCCTCCGGGTGAAACGGCGGTCTCGCCGCAGCCAGGTGGGCTTCCAGCAG GTTGGTGTGGAGACCTACGGTGGTGGGATCTGGAGCACTTGGTTTGACCGTGACCTGACC TTGGCTGGACGTGTCATTGTCAAGTGCCCTACCTCAGGCCGGCTGGAGCAGCGGCTGGTG CACGTGGACCGGCCCATTCTTCGCATCCCACACCTGGCCATCCACCTGCAGCGAAATGTC AATGAGAACTTCGGGCCCAACATGGAGATGCACTTAGTCCCCATTCTTGCCACAGCAGTC CAGGAGGAGCTGGAGAAGGGGACTCCTGAGCCAGGCCCTCTCAATGCTGCAGATGACCGG CACCACTCAGTCCTCATGTCCCTTCTCTGCGCCCATCTGGGGCTGAGCCCGGAGGATATC TTGGAGATGGAGCTGTGTCTCGCGGACACTCAGCCCGCGGTCCTGGGCGGTGCCTATGAG GAGTTCATCTTTGCCCCTCGACTGGACAATCTTCACAGCTGCTTCTGTGCCCTGCAGGCT TTGATCGATTCCTGCGCAGCCCCTGCCTCCCTGGCAGTGGATCCCCATGTACGCATGATC GCCCTCTACGACAACGAAGAGGTGGGGTCAGAGAGCGCGCAGGGCGCTCAGTCACTGCTG ACGGAGCTGGTGCTGCGGAGGATCTCGGCGTCGCCCCAGCACCTGACAGCCTTCGAGGAA GCCATCCCCAAGTCCTACATGATCAGCGCAGACATGGCCCACGCCGTGCACCCCAACTAC CTGGACAAGCATGAGGAGAACCACCGGCCCTTATTCCACAAGGGCCCTGTGATCAAGGTG AACAGCAAGCAGCGCTACGCCTCCAACGCAGTTTCAGAGGCTCTCATCCGAGAGGTGGCC CGCAATGTCGGGGTGCCCCTGCAGGATCTCATGGTGCGGAATGACTCCCCCTGCGGGACC ACCATTGGACCTATCTTGGCTTCTCGGCTAGGGCTGCGGGTGCTGGATTTAGGCAGCCCC CAGCTGGCCATGCACTCCATCCGGGAGACAGCCTGCACTTCTGGAGTGCTCCAGACCCTC ACTCTCTTCAAGGGCTTCTTTGAGCTGTTCCCTTCTCTGAGCCGGAACCTCCTAGTGGAT TGAGGCCTCTTGGAAAGACTTCTCTCGCACTTGAGGTGGGAAGTTCTCAGCTGAGCTGAA GCTGGATTATTAAAGTGGATTTTTCACTGAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCCTCTCGTCCCGCACGAACTTCGATCCCAAACCCGGCCCGGCAGCCTCTTGGGCCCAGG CTCAACCTTGCGCTTGCTGACGTGGGGGCTCCGCCCGACCCTAAACAAAACTGAAAGCCA GGCCCCAAGTGACTTTACCTTCCTGGGGTTGCTAAGGAGGGGTCTGCGAGAGACTGCTTT CCCACGCGTCAGGCCATGCAGGTGGCCATGAGCGGCAGGGCCCGCAAAGAGGCGGTGCAA GCCGCGGCCCGGGAACTCCTCAAGTTTGTGAACCAGAGCCCCTCTCCTTTCCACGCGGTG GCCGAGTGCCGCAGCCGCCTCCTCCAGGCTGGCTTCCGTGAACTCAAGGAGACGGAGAGC TGGGATATCAAGCCGGAGAGTAAGTACTTCCTGACCAGGAATTCCTCCACCATCATCGCT TTTGCTGTGGGAGGCCAGTATGTTCCTGGCAATGGTTTCAGCCTCATCGGGGCCCACACG GACAGCCCCTGCCTCCGGGTGAAACGGCGGTCTCGCCGCAGCCAGGTGGGCTTCCAGCAG GTTGGTGTGGAGACCTACGGTGGTGGGATCTGGAGCACTTGGTTTGACCGTGACCTGACC TTGGCTGGACGTGTCATTGTCAAGTGCCCTACCTCAGGCCGGCTGGAGCAGCGGCTGGTG CACGTGGACCGGCCCATTCTTCGCATCCCACACCTGGCCATCCACCTGCAGCGAAATGTC AATGAGAACTTCGGGCCCAACATGGAGATGCACTTAGTCCCCATTCTTGCCACAGCAGTC CAGGAGGAGCTGGAGAAGGGGACTCCTGAGCCAGGCCCTCTCAATGCTGCAGATGACCGG CACCACTCAGTCCTCATGTCCCTTCTCTGCGCCCATCTGGGGCTGAGCCCGGAGGATATC TTGGAGATGGAGCTGTGTCTCGCGGACACTCAGCCCGCGGTCCTGGGCGGTGCCTATGAG GAGTTCATCTTTGCCCCTCGACTGGACAATCTTCACAGCTGCTTCTGTGCCCTGCAGGCT TTGATCGATTCCTGCGCAGCCCCTGCCTCCCTGGCAGTGGATCCCCATGTACGCATGATC GCCCTCTACGACAACGAAGAGGTGGGGTCAGAGAGCGCGCAGGGCGCTCAGTCACTGCTG ACGGAGCTGGTGCTGCGGAGGATCTCGGCGTCGCCCCAGCACCTGACAGCCTTCGAGGAA GCCATCCCCAAGTCCTACATGATCAGCGCAGACATGGCCCACGCCGTGCACCCCAACTAC CTGGACAAGCATGAGGAGAACCACCGGCCCTTATTCCACAAGGGCCCTGTGATCAAGGTG AACAGCAAGCAGCGCTACGCCTCCAACGCAGTTTCAGAGGCTCTCATCCGAGAGGTGGCC CGCAATGTCGGGGTGCCCCTGCAGGATCTCATGGTGCGGAATGACTCCCCCTGCGGGACC ACCATTGGACCTATCTTGGCTTCTCGGCTAGGGCTGCGGGTGCTGGATTTAGGCAGCCCC CAGCTGGCCATGCACTCCATCCGGGAGACAGCCTGCACTTCTGGAGTGCTCCAGACCCTC ACTCTCTTCAAGGGCTTCTTTGAGCTGTTCCCTTCTCTGAGCCGGAACCTCCTAGTGGAT TGAGGCCTCTTGGAAAGACTTCTCTCGCACTTGAGGTGGGAAGTTCTCAGCTGAGCTGAA GCTGGATTATTAAAGTGGATTTTTCACTGAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 81 entry(ies) | More info |
| Aligned organism(s): 81 entry(ies) | Help | Less info |
| 6-157, gnl|bosTau2|chr2 (64475022-64475173) | |
| 6-157, gnl|Hg17|chr2 (220077970-220077825) | |
| 6-157, gnl|Mm7|chr1 (75543721-75543579) | |
| 383-500, gnl|bosTau2|chr2 (64475971-64476088) | |
| 383-500, gnl|Hg17|chr2 (220077007-220076890) | |
| 383-500, gnl|Mm7|chr1 (75542847-75542730) | |
| 623-755, gnl|bosTau2|chr2 (64476604-64476736) | |
| 623-755, gnl|canFam2|chr37 (28906560-28906694) | |
| 623-755, gnl|danRer3|chr6 (9479048-9479173) | |
| 623-755, gnl|echTel1|scaffold_281463 (48810-48939) | |
| 623-755, gnl|fr1|chrUn (18336742-18336616) | |
| 623-755, gnl|galGal2|chr7 (22966594-22966460) | |
| 623-755, gnl|hg17|chr2 (220076191-220076325) | |
| 623-755, gnl|Hg17|chr2 (220076327-220076195) | |
| 623-755, gnl|loxAfr1|scaffold_145 (187424-187558) | |
| 623-755, gnl|mm7|chr1 (75542017-75542151) | |
| 623-755, gnl|Mm7|chr1 (75542153-75542021) | |
| 623-755, gnl|monDom2|scaffold_39 (1230781-1230647) | |
| 623-755, gnl|oryCun1|scaffold_201000 (77230-77096) | |
| 623-755, gnl|panTro1|chr13 (110240071-110240205) | |
| 623-755, gnl|rheMac2|chr12 (83233328-83233462) | |
| 623-755, gnl|rn3|chr9 (74740558-74740692) | |
| 623-755, gnl|tetNig1|chr3 (973092-972966) | |
| 623-755, gnl|xenTro1|scaffold_31 (2911634-2911498) | |
| 827-941, gnl|bosTau2|chr2 (64477221-64477336) | |
| 827-941, gnl|canFam2|chr37 (28905967-28906107) | |
| 827-941, gnl|danRer3|chr6 (9472787-9472904) | |
| 827-941, gnl|dasNov1|scaffold_29372 (3648-3513) | |
| 827-941, gnl|echTel1|scaffold_281463 (48612-48733) | |
| 827-941, gnl|fr1|chrUn (18337629-18337503) | |
| 827-941, gnl|galGal2|chr7 (22967503-22967343) | |
| 827-941, gnl|hg17|chr2 (220075647-220075785) | |
| 827-941, gnl|Hg17|chr2 (220075764-220075649) | |
| 827-941, gnl|loxAfr1|scaffold_145 (186850-186990) | |
| 827-941, gnl|mm7|chr1 (75541528-75541667) | |
| 827-941, gnl|Mm7|chr1 (75541645-75541530) | |
| 827-941, gnl|monDom2|scaffold_39 (1231425-1231285) | |
| 827-941, gnl|oryCun1|scaffold_201000 (77743-77601) | |
| 827-941, gnl|panTro1|chr13 (110239529-110239667) | |
| 827-941, gnl|rheMac2|chr12 (83232797-83232935) | |
| 827-941, gnl|rn3|chr9 (74740045-74740184) | |
| 827-941, gnl|tetNig1|chr3 (973791-973652) | |
| 827-941, gnl|xenTro1|scaffold_31 (2912457-2912331) | |
| 1100-1263, gnl|bosTau2|chr2 (64480179-64480342) | |
| 1100-1263, gnl|canFam2|chr37 (28902702-28902894) | |
| 1100-1263, gnl|danRer3|chr6 (9471915-9472092) | |
| 1100-1263, gnl|dasNov1|scaffold_29372 (6523-6329) | |
| 1100-1263, gnl|echTel1|scaffold_281463 (48285-48442) | |
| 1100-1263, gnl|fr1|chrUn (18338492-18338292) | |
| 1100-1263, gnl|galGal2|chr7 (22968667-22968487) | |
| 1100-1263, gnl|hg17|chr2 (220072199-220072393) | |
| 1100-1263, gnl|Hg17|chr2 (220072368-220072205) | |
| 1100-1263, gnl|loxAfr1|scaffold_145 (183411-183608) | |
| 1100-1263, gnl|mm7|chr1 (75538800-75538994) | |
| 1100-1263, gnl|Mm7|chr1 (75538969-75538806) | |
| 1100-1263, gnl|monDom2|scaffold_39 (1233846-1233650) | |
| 1100-1263, gnl|oryCun1|scaffold_201000 (80510-80329) | |
| 1100-1263, gnl|panTro1|chr13 (110236062-110236256) | |
| 1100-1263, gnl|rheMac2|chr12 (83228751-83228945) | |
| 1100-1263, gnl|rn3|chr9 (74737021-74737215) | |
| 1100-1263, gnl|tetNig1|chr3 (974421-974234) | |
| 1100-1263, gnl|xenTro1|scaffold_31 (2917610-2917413) | |
| 1402-1573, gnl|bosTau2|chr2 (64487752-64487923) | |
| 1402-1573, gnl|canFam2|chr37 (28897983-28898191) | |
| 1402-1573, gnl|danRer3|chr6 (9464407-9464595) | |
| 1402-1573, gnl|dasNov1|scaffold_29372 (9303-9096) | |
| 1402-1573, gnl|echTel1|scaffold_243174 (835-1036) | |
| 1402-1573, gnl|fr1|chrUn (18339383-18339184) | |
| 1402-1573, gnl|galGal2|chr7 (22969816-22969599) | |
| 1402-1573, gnl|hg17|chr2 (220065075-220065283) | |
| 1402-1573, gnl|Hg17|chr2 (220065252-220065081) | |
| 1402-1573, gnl|loxAfr1|scaffold_145 (180304-180513) | |
| 1402-1573, gnl|mm7|chr1 (75535694-75535903) | |
| 1402-1573, gnl|Mm7|chr1 (75535871-75535700) | |
| 1402-1573, gnl|monDom2|scaffold_39 (1234555-1234341) | |
| 1402-1573, gnl|oryCun1|scaffold_201000 (82367-82159) | |
| 1402-1573, gnl|panTro1|chr13 (110228980-110229188) | |
| 1402-1573, gnl|rheMac2|chr12 (83221103-83221309) | |
| 1402-1573, gnl|rn3|chr9 (74734265-74734471) | |
| 1402-1573, gnl|tetNig1|chr3 (975072-974889) | |
| 1402-1573, gnl|xenTro1|scaffold_31 (2919244-2919039) |
| Aligned organism(s): 81 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 6-157, gnl|bosTau2|chr2 (64475022-64475173) | |
| 6-157, gnl|Hg17|chr2 (220077970-220077825) | |
| 6-157, gnl|Mm7|chr1 (75543721-75543579) | |
| 383-500, gnl|bosTau2|chr2 (64475971-64476088) | |
| 383-500, gnl|Hg17|chr2 (220077007-220076890) | |
| 383-500, gnl|Mm7|chr1 (75542847-75542730) | |
| 623-755, gnl|bosTau2|chr2 (64476604-64476736) | |
| 623-755, gnl|canFam2|chr37 (28906560-28906694) | |
| 623-755, gnl|danRer3|chr6 (9479048-9479173) | |
| 623-755, gnl|echTel1|scaffold_281463 (48810-48939) | |
| 623-755, gnl|fr1|chrUn (18336742-18336616) | |
| 623-755, gnl|galGal2|chr7 (22966594-22966460) | |
| 623-755, gnl|hg17|chr2 (220076191-220076325) | |
| 623-755, gnl|Hg17|chr2 (220076327-220076195) | |
| 623-755, gnl|loxAfr1|scaffold_145 (187424-187558) | |
| 623-755, gnl|mm7|chr1 (75542017-75542151) | |
| 623-755, gnl|Mm7|chr1 (75542153-75542021) | |
| 623-755, gnl|monDom2|scaffold_39 (1230781-1230647) | |
| 623-755, gnl|oryCun1|scaffold_201000 (77230-77096) | |
| 623-755, gnl|panTro1|chr13 (110240071-110240205) | |
| 623-755, gnl|rheMac2|chr12 (83233328-83233462) | |
| 623-755, gnl|rn3|chr9 (74740558-74740692) | |
| 623-755, gnl|tetNig1|chr3 (973092-972966) | |
| 623-755, gnl|xenTro1|scaffold_31 (2911634-2911498) | |
| 827-941, gnl|bosTau2|chr2 (64477221-64477336) | |
| 827-941, gnl|canFam2|chr37 (28905967-28906107) | |
| 827-941, gnl|danRer3|chr6 (9472787-9472904) | |
| 827-941, gnl|dasNov1|scaffold_29372 (3648-3513) | |
| 827-941, gnl|echTel1|scaffold_281463 (48612-48733) | |
| 827-941, gnl|fr1|chrUn (18337629-18337503) | |
| 827-941, gnl|galGal2|chr7 (22967503-22967343) | |
| 827-941, gnl|hg17|chr2 (220075647-220075785) | |
| 827-941, gnl|Hg17|chr2 (220075764-220075649) | |
| 827-941, gnl|loxAfr1|scaffold_145 (186850-186990) | |
| 827-941, gnl|mm7|chr1 (75541528-75541667) | |
| 827-941, gnl|Mm7|chr1 (75541645-75541530) | |
| 827-941, gnl|monDom2|scaffold_39 (1231425-1231285) | |
| 827-941, gnl|oryCun1|scaffold_201000 (77743-77601) | |
| 827-941, gnl|panTro1|chr13 (110239529-110239667) | |
| 827-941, gnl|rheMac2|chr12 (83232797-83232935) | |
| 827-941, gnl|rn3|chr9 (74740045-74740184) | |
| 827-941, gnl|tetNig1|chr3 (973791-973652) | |
| 827-941, gnl|xenTro1|scaffold_31 (2912457-2912331) | |
| 1100-1263, gnl|bosTau2|chr2 (64480179-64480342) | |
| 1100-1263, gnl|canFam2|chr37 (28902702-28902894) | |
| 1100-1263, gnl|danRer3|chr6 (9471915-9472092) | |
| 1100-1263, gnl|dasNov1|scaffold_29372 (6523-6329) | |
| 1100-1263, gnl|echTel1|scaffold_281463 (48285-48442) | |
| 1100-1263, gnl|fr1|chrUn (18338492-18338292) | |
| 1100-1263, gnl|galGal2|chr7 (22968667-22968487) | |
| 1100-1263, gnl|hg17|chr2 (220072199-220072393) | |
| 1100-1263, gnl|Hg17|chr2 (220072368-220072205) | |
| 1100-1263, gnl|loxAfr1|scaffold_145 (183411-183608) | |
| 1100-1263, gnl|mm7|chr1 (75538800-75538994) | |
| 1100-1263, gnl|Mm7|chr1 (75538969-75538806) | |
| 1100-1263, gnl|monDom2|scaffold_39 (1233846-1233650) | |
| 1100-1263, gnl|oryCun1|scaffold_201000 (80510-80329) | |
| 1100-1263, gnl|panTro1|chr13 (110236062-110236256) | |
| 1100-1263, gnl|rheMac2|chr12 (83228751-83228945) | |
| 1100-1263, gnl|rn3|chr9 (74737021-74737215) | |
| 1100-1263, gnl|tetNig1|chr3 (974421-974234) | |
| 1100-1263, gnl|xenTro1|scaffold_31 (2917610-2917413) | |
| 1402-1573, gnl|bosTau2|chr2 (64487752-64487923) | |
| 1402-1573, gnl|canFam2|chr37 (28897983-28898191) | |
| 1402-1573, gnl|danRer3|chr6 (9464407-9464595) | |
| 1402-1573, gnl|dasNov1|scaffold_29372 (9303-9096) | |
| 1402-1573, gnl|echTel1|scaffold_243174 (835-1036) | |
| 1402-1573, gnl|fr1|chrUn (18339383-18339184) | |
| 1402-1573, gnl|galGal2|chr7 (22969816-22969599) | |
| 1402-1573, gnl|hg17|chr2 (220065075-220065283) | |
| 1402-1573, gnl|Hg17|chr2 (220065252-220065081) | |
| 1402-1573, gnl|loxAfr1|scaffold_145 (180304-180513) | |
| 1402-1573, gnl|mm7|chr1 (75535694-75535903) | |
| 1402-1573, gnl|Mm7|chr1 (75535871-75535700) | |
| 1402-1573, gnl|monDom2|scaffold_39 (1234555-1234341) | |
| 1402-1573, gnl|oryCun1|scaffold_201000 (82367-82159) | |
| 1402-1573, gnl|panTro1|chr13 (110228980-110229188) | |
| 1402-1573, gnl|rheMac2|chr12 (83221103-83221309) | |
| 1402-1573, gnl|rn3|chr9 (74734265-74734471) | |
| 1402-1573, gnl|tetNig1|chr3 (975072-974889) | |
| 1402-1573, gnl|xenTro1|scaffold_31 (2919244-2919039) |
| Expressed library(ies): 13 entry(ies) | More info |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
| jej (0.890296) | |
| cov (0.396458) | |
| pla (0.267344) | |
| clu (0.239292) | |
| nlu (0.191681) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| nje (0.16592) | |
| cag (0.151194) | |
| pty (0.142714) | |
| eep (0.122564) | |
| cty (0.10408) | |
| nbm (0.0993246) |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| jej (0.890296) | |
| cov (0.396458) | |
| pla (0.267344) | |
| clu (0.239292) | |
| nlu (0.191681) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| nje (0.16592) | |
| cag (0.151194) | |
| pty (0.142714) | |
| eep (0.122564) | |
| cty (0.10408) | |
| nbm (0.0993246) |