Non-Coding RNA Search

Ss1.1-Pig4-TMW8037H24.3

Sequence:


               
               ACTGGCCCACTTGATGTCCATATGGTAGAAAGTGGCTCGTTCCTGGTAGAAGGGGGCTGT
CATTTCAGAATTATCATTGATTCCCATTCCCCTGCCAACTCCAACATTTGTTTGTACTCC
AGAAAGACAAACTGCCATTTCCTGCTGGATGGGGAGTAGACAGGGTTCAAGGTTATGCCA
GAGCCTTGCAGGATGGAGCACCTCTGGAAGAGTCAGGTCTGCCTTGGAATTTTCCTCCTG
TCATTGCCCCAGAGCCTGACCTGAAAATTTCCCATGTTCAATGCTCAAGTCATCCATTTT
GCAAAAGCTGCTTCTTTCATGGTAGAAAACAAATCATATGGAGACATCACTACTTTTATG
ATGAAAAAAGGGCTTTAGAAACAAAATACACGCACGCATGCATGCACCAACACGCACAAC
CATAGCTTCAATCTTGTACTTAGTTTGGGGAAAGGAAAAAGAATTTCCTGTGGATTTTTT
TTTTAAAGTGCACCTCTCTTGTTTGACACAAACTCTGCAAGAAGACCACTGTGATTAAAA
CATACATACAGCCTGCCTAAGTGTTCCACGGTTTCAGTTGAATTTCATTCTTCAGCCTTT
ACACATGAGGTCAAGACATGACCAGAATATAAAGCTAGGAGAAAAGGAAGTATTTGATCT
TTGCTCAATGCTTAATTTATTTTTTACTGTGCCATTCTAACGAGAATATTTATAAAATCC
AGTAGCATGAATGCTTCTCCGTAGTAATACTAATTTTGTGCCTTTGTCTGCTTTCTTAAG
ACCAATTGTTCACACTTTGTAGATATTAGACAAATATATTTCGATTAAATACTATACTTT
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTGGCCCACTTGATGTCCATATGGTAGAAAGTGGCTCGTTCCTGGTAGAAGGGGGCTGT
CATTTCAGAATTATCATTGATTCCCATTCCCCTGCCAACTCCAACATTTGTTTGTACTCC
AGAAAGACAAACTGCCATTTCCTGCTGGATGGGGAGTAGACAGGGTTCAAGGTTATGCCA
GAGCCTTGCAGGATGGAGCACCTCTGGAAGAGTCAGGTCTGCCTTGGAATTTTCCTCCTG
TCATTGCCCCAGAGCCTGACCTGAAAATTTCCCATGTTCAATGCTCAAGTCATCCATTTT
GCAAAAGCTGCTTCTTTCATGGTAGAAAACAAATCATATGGAGACATCACTACTTTTATG
ATGAAAAAAGGGCTTTAGAAACAAAATACACGCACGCATGCATGCACCAACACGCACAAC
CATAGCTTCAATCTTGTACTTAGTTTGGGGAAAGGAAAAAGAATTTCCTGTGGATTTTTT
TTTTAAAGTGCACCTCTCTTGTTTGACACAAACTCTGCAAGAAGACCACTGTGATTAAAA
CATACATACAGCCTGCCTAAGTGTTCCACGGTTTCAGTTGAATTTCATTCTTCAGCCTTT
ACACATGAGGTCAAGACATGACCAGAATATAAAGCTAGGAGAAAAGGAAGTATTTGATCT
TTGCTCAATGCTTAATTTATTTTTTACTGTGCCATTCTAACGAGAATATTTATAAAATCC
AGTAGCATGAATGCTTCTCCGTAGTAATACTAATTTTGTGCCTTTGTCTGCTTTCTTAAG
ACCAATTGTTCACACTTTGTAGATATTAGACAAATATATTTCGATTAAATACTATACTTT
AAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               43-839, gnl|bosTau2|chr22 (4303699-4302889)
               

               
               43-839, gnl|Hg17|chr3 (31678097-31677320)
               

               
               43-839, gnl|Mm7|chr9 (114897326-114898048)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               43-839, gnl|bosTau2|chr22 (4303699-4302889)
               

               
               43-839, gnl|Hg17|chr3 (31678097-31677320)
               

               
               43-839, gnl|Mm7|chr9 (114897326-114898048)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               ski (0.29347)
               

               
               gul (0.177588)
               

               
               nje (0.16592)
               

               
               fco (0.157208)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               eje (0.0988338)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ski (0.29347)
               

               
               gul (0.177588)
               

               
               nje (0.16592)
               

               
               fco (0.157208)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               eje (0.0988338)

	43-839, gnl\|bosTau2\|chr22 (4303699-4302889)
	43-839, gnl\|Hg17\|chr3 (31678097-31677320)
	43-839, gnl\|Mm7\|chr9 (114897326-114898048)

	ski (0.29347)
	gul (0.177588)
	nje (0.16592)
	fco (0.157208)
	ret (0.128733)
	thg (0.126791)
	eje (0.0988338)