Ss1.1-Pig4-TMW8037I06.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGTGTCCCAGTGGGGCCTGAGAATGGGGTGGAACTTTCCAAAGAGGAACTGATCCGTAGG AAGCGAGAAGAGTTCATTCAGAAGCATGGGAGGGGTGTGGAGAAGTCGGGCAAGTCCACA AAGTCAGATGCTCCCAAGGAGAAAGGCAAAAAAGCACCCCGTGTGTGGGCACTGGGTGGC TCTGCTAACAAGGAAGTCTTGGACTACAGTACTCCCACCACCAATGGAGCCCCCGAGGCG GCCCCGCCTGAGGACATCAACTTGATTCGAGGGACTGGGCCTGGAGGCCAGCTTCAGGAT TTGGACTGCAGCAGCTCAGATGATGAAGGGGCCACTCAAAACTCCACCAAACCTAGTTCT ACCAAAGGGACTCTGGGTGGCATGTTTGGGATGCTGAAGGGCCTTGTGGGTTCCAAGAGC TTGAGTCGAGAAGACATGGAATCTGTGCTGGATAAGATGCGTGACCATCTCATTGCTAAG AATGTGGCAGCAGACATTGCAGTCCAGCTCTGTGAATCTGTGGCCAGCAAGTTGGAAGGG AAGGTGATGGGGACCTTCAGCACGGTGACTTCCACAGTAAAGCAAGCTCTGCAGGAGTCC CTGGTGCAGATTCTGCAGCCACAGCGCCGTGTAGACATGCTGCGGGACATCATGGATGCC CAGCGTCATCAGCGCCCCTATGTGGTCACTTTCTGTGGTGTTAATGGAGTGGGGAAGTCT ACAAATCTTGCCAAGATTTCCTTCTGGCTGCTGGAGAACGGCTTCAGTGTCCTCATAGCT GCCTGTGATACATTTCGTGCTGGGGCCGTGGAGCAGCTGCGGACACACACCCGGCGCCTG AGTGCCCTGCACCCCCCAGAGAATCATGGTGGCCGCACCATGGTGCAGTTGTTTGAGAAG GGTTATGGCAAGGATGCTGCCGGCATTGCCATGGAAGCTATTGCCTTTGCTCGTAACCAA GGCTTTGATGTGGTGCTGGTGGACACAGCTGGCCGAATGCAAGACAATGCCCCTCTGATG ACCGCCCTGGCCAAGCTCATTACTGTCAACACACCTGACCTGGTGCTGTTTGTGGGGGAG GCTTTAGTAGGCAATGAGGCTGTGGACCAGCTGGTCAAGTTCAACAGAGCTTTGGCTGAC CATTCCATGGCTCAGACGCCTCGGCTCATTGATGGCATTGTGCTTACCAAATTTGATACC ATTGATGACAAGGTGGGAGCTGCTATTTCCATGACCTACATCACAAGCAAACCCATCGTC TTTGTGGGCACTGGCCAGACCTACTGTGACCTACGCAGTCTTAACGCCAAGGCTGTGGTG GCTGCCCTCATGAAGGCTTAAAGTGGCTCTTGCTGAATACCAAAATCACCGCTTCCCTCC AAAGCCCCCATCCCTGTATCAAGAACGTGCTTTAGAGTATGTGAGCAACTTGTCTTCAGT GTAGTTTAAAGGCAGAGTGAGGGGAGCATTGGGGACTTGCAGCCCTGACCCCACTCCCCG TTCAGCCGAGCCTCCATCTGCAAGGAGGGCCTAATCATGTTACAGTCACTGCCCACTACC TGCACCCCCCGGGACCTCTCCGTTCCTGCTCAGGCACCCCTTTACTCTGTCTACGGACTT GGTCTCGTGACAGTTTTGACCTGGTTAGAACATCCAACACCAGAGCTTTGCCGCATAGTG TGGTCATGGGGCTGTCTGAGCAGTTTCCAGTTTTCCAGCTTTCAGAGCCAGCTCTTAGGT CTCAAGTGGCACCTCTTCCTAGGATATACAGCTTTCAGGTCCCTGGGACCAGGATGACAC CCCCCACACTGTGGCAGTGTATGGCCTATTCTTAATTGCTGCTAATATGATAATGACCCT GCCCCATTTCCCTGAAGCATCAGCTAGGCCAGAGTGATGTGTTACAGTGAAAGAGGAGTC CCCACTTCCCTTAGAAACAGAGGGAGCTGAGCTGCAGTGCTGCACCAGGCTTCTCAGTCT CCAAAGCCTCCCACTCCCAAATCAGACGTAACTTTGCATGTTCCCCTTCCTGGAAGAAAA CTGTCAGAAGGGGATACACGTTGCCCCTGCCCCTCTTCATTCAAGCAGATCCTGGCTTCT CATCCTCCTCCACAGTGCCTGGTAGACAAGTGCTACGCTGAAGAATACAGACCTTGTTAA GACTTGTCCTGTAGCTTGGTATTACAGATGTGCTATTAGTGCAATAAGGTGAAGGCCGTC TGCCCAGAGAAATAATTTATATAAGAAAATAAATTTCATAAATAAATTGCCAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGTGTCCCAGTGGGGCCTGAGAATGGGGTGGAACTTTCCAAAGAGGAACTGATCCGTAGG AAGCGAGAAGAGTTCATTCAGAAGCATGGGAGGGGTGTGGAGAAGTCGGGCAAGTCCACA AAGTCAGATGCTCCCAAGGAGAAAGGCAAAAAAGCACCCCGTGTGTGGGCACTGGGTGGC TCTGCTAACAAGGAAGTCTTGGACTACAGTACTCCCACCACCAATGGAGCCCCCGAGGCG GCCCCGCCTGAGGACATCAACTTGATTCGAGGGACTGGGCCTGGAGGCCAGCTTCAGGAT TTGGACTGCAGCAGCTCAGATGATGAAGGGGCCACTCAAAACTCCACCAAACCTAGTTCT ACCAAAGGGACTCTGGGTGGCATGTTTGGGATGCTGAAGGGCCTTGTGGGTTCCAAGAGC TTGAGTCGAGAAGACATGGAATCTGTGCTGGATAAGATGCGTGACCATCTCATTGCTAAG AATGTGGCAGCAGACATTGCAGTCCAGCTCTGTGAATCTGTGGCCAGCAAGTTGGAAGGG AAGGTGATGGGGACCTTCAGCACGGTGACTTCCACAGTAAAGCAAGCTCTGCAGGAGTCC CTGGTGCAGATTCTGCAGCCACAGCGCCGTGTAGACATGCTGCGGGACATCATGGATGCC CAGCGTCATCAGCGCCCCTATGTGGTCACTTTCTGTGGTGTTAATGGAGTGGGGAAGTCT ACAAATCTTGCCAAGATTTCCTTCTGGCTGCTGGAGAACGGCTTCAGTGTCCTCATAGCT GCCTGTGATACATTTCGTGCTGGGGCCGTGGAGCAGCTGCGGACACACACCCGGCGCCTG AGTGCCCTGCACCCCCCAGAGAATCATGGTGGCCGCACCATGGTGCAGTTGTTTGAGAAG GGTTATGGCAAGGATGCTGCCGGCATTGCCATGGAAGCTATTGCCTTTGCTCGTAACCAA GGCTTTGATGTGGTGCTGGTGGACACAGCTGGCCGAATGCAAGACAATGCCCCTCTGATG ACCGCCCTGGCCAAGCTCATTACTGTCAACACACCTGACCTGGTGCTGTTTGTGGGGGAG GCTTTAGTAGGCAATGAGGCTGTGGACCAGCTGGTCAAGTTCAACAGAGCTTTGGCTGAC CATTCCATGGCTCAGACGCCTCGGCTCATTGATGGCATTGTGCTTACCAAATTTGATACC ATTGATGACAAGGTGGGAGCTGCTATTTCCATGACCTACATCACAAGCAAACCCATCGTC TTTGTGGGCACTGGCCAGACCTACTGTGACCTACGCAGTCTTAACGCCAAGGCTGTGGTG GCTGCCCTCATGAAGGCTTAAAGTGGCTCTTGCTGAATACCAAAATCACCGCTTCCCTCC AAAGCCCCCATCCCTGTATCAAGAACGTGCTTTAGAGTATGTGAGCAACTTGTCTTCAGT GTAGTTTAAAGGCAGAGTGAGGGGAGCATTGGGGACTTGCAGCCCTGACCCCACTCCCCG TTCAGCCGAGCCTCCATCTGCAAGGAGGGCCTAATCATGTTACAGTCACTGCCCACTACC TGCACCCCCCGGGACCTCTCCGTTCCTGCTCAGGCACCCCTTTACTCTGTCTACGGACTT GGTCTCGTGACAGTTTTGACCTGGTTAGAACATCCAACACCAGAGCTTTGCCGCATAGTG TGGTCATGGGGCTGTCTGAGCAGTTTCCAGTTTTCCAGCTTTCAGAGCCAGCTCTTAGGT CTCAAGTGGCACCTCTTCCTAGGATATACAGCTTTCAGGTCCCTGGGACCAGGATGACAC CCCCCACACTGTGGCAGTGTATGGCCTATTCTTAATTGCTGCTAATATGATAATGACCCT GCCCCATTTCCCTGAAGCATCAGCTAGGCCAGAGTGATGTGTTACAGTGAAAGAGGAGTC CCCACTTCCCTTAGAAACAGAGGGAGCTGAGCTGCAGTGCTGCACCAGGCTTCTCAGTCT CCAAAGCCTCCCACTCCCAAATCAGACGTAACTTTGCATGTTCCCCTTCCTGGAAGAAAA CTGTCAGAAGGGGATACACGTTGCCCCTGCCCCTCTTCATTCAAGCAGATCCTGGCTTCT CATCCTCCTCCACAGTGCCTGGTAGACAAGTGCTACGCTGAAGAATACAGACCTTGTTAA GACTTGTCCTGTAGCTTGGTATTACAGATGTGCTATTAGTGCAATAAGGTGAAGGCCGTC TGCCCAGAGAAATAATTTATATAAGAAAATAAATTTCATAAATAAATTGCCAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 34 entry(ies) | More info |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
| 1-107, gnl|bosTau2|chr29 (21570468-21570574) | |
| 1-107, gnl|Hg17|chr11 (125641977-125641871) | |
| 1-107, gnl|Mm7|chr9 (35107982-35108085) | |
| 110-286, gnl|bosTau2|chr29 (21570708-21570885) | |
| 110-286, gnl|Hg17|chr11 (125641735-125641558) | |
| 110-286, gnl|Mm7|chr9 (35108184-35108360) | |
| 355-480, gnl|bosTau2|chr29 (21571279-21571404) | |
| 355-480, gnl|canFam2|chr5 (11251941-11251835) | |
| 355-480, gnl|danRer3|chr18 (47085417-47085315) | |
| 355-480, gnl|dasNov1|scaffold_139372 (1909-1803) | |
| 355-480, gnl|echTel1|scaffold_276208 (41455-41561) | |
| 355-480, gnl|fr1|chrUn (160921221-160921327) | |
| 355-480, gnl|galGal2|chr24 (398560-398455) | |
| 355-480, gnl|hg17|chr11 (125641062-125641168) | |
| 355-480, gnl|Hg17|chr11 (125641188-125641063) | |
| 355-480, gnl|loxAfr1|scaffold_9399 (82675-82569) | |
| 355-480, gnl|mm7|chr9 (35108865-35108759) | |
| 355-480, gnl|Mm7|chr9 (35108737-35108862) | |
| 355-480, gnl|monDom2|scaffold_15 (13202958-13203064) | |
| 355-480, gnl|oryCun1|scaffold_193901 (6862-6968) | |
| 355-480, gnl|panTro1|chr9 (127724344-127724450) | |
| 355-480, gnl|rheMac2|chr14 (124410583-124410689) | |
| 355-480, gnl|rn3|chr8 (35004072-35003966) | |
| 355-480, gnl|tetNig1|chrUn_random (14329871-14329765) | |
| 355-480, gnl|xenTro1|scaffold_709 (311040-310934) | |
| 734-949, gnl|bosTau2|chr29 (21572179-21572394) | |
| 734-949, gnl|Hg17|chr11 (125640279-125640064) | |
| 734-949, gnl|Mm7|chr9 (35109618-35109833) | |
| 1113-1214, gnl|bosTau2|chr29 (21573285-21573386) | |
| 1113-1214, gnl|Hg17|chr11 (125639395-125639294) | |
| 1113-1214, gnl|Mm7|chr9 (35110516-35110617) | |
| 1570-2271, gnl|bosTau2|chr29 (21573543-21574263) | |
| 1570-2271, gnl|Hg17|chr11 (125639127-125638038) | |
| 1570-2271, gnl|Mm7|chr9 (35110762-35111817) |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-107, gnl|bosTau2|chr29 (21570468-21570574) | |
| 1-107, gnl|Hg17|chr11 (125641977-125641871) | |
| 1-107, gnl|Mm7|chr9 (35107982-35108085) | |
| 110-286, gnl|bosTau2|chr29 (21570708-21570885) | |
| 110-286, gnl|Hg17|chr11 (125641735-125641558) | |
| 110-286, gnl|Mm7|chr9 (35108184-35108360) | |
| 355-480, gnl|bosTau2|chr29 (21571279-21571404) | |
| 355-480, gnl|canFam2|chr5 (11251941-11251835) | |
| 355-480, gnl|danRer3|chr18 (47085417-47085315) | |
| 355-480, gnl|dasNov1|scaffold_139372 (1909-1803) | |
| 355-480, gnl|echTel1|scaffold_276208 (41455-41561) | |
| 355-480, gnl|fr1|chrUn (160921221-160921327) | |
| 355-480, gnl|galGal2|chr24 (398560-398455) | |
| 355-480, gnl|hg17|chr11 (125641062-125641168) | |
| 355-480, gnl|Hg17|chr11 (125641188-125641063) | |
| 355-480, gnl|loxAfr1|scaffold_9399 (82675-82569) | |
| 355-480, gnl|mm7|chr9 (35108865-35108759) | |
| 355-480, gnl|Mm7|chr9 (35108737-35108862) | |
| 355-480, gnl|monDom2|scaffold_15 (13202958-13203064) | |
| 355-480, gnl|oryCun1|scaffold_193901 (6862-6968) | |
| 355-480, gnl|panTro1|chr9 (127724344-127724450) | |
| 355-480, gnl|rheMac2|chr14 (124410583-124410689) | |
| 355-480, gnl|rn3|chr8 (35004072-35003966) | |
| 355-480, gnl|tetNig1|chrUn_random (14329871-14329765) | |
| 355-480, gnl|xenTro1|scaffold_709 (311040-310934) | |
| 734-949, gnl|bosTau2|chr29 (21572179-21572394) | |
| 734-949, gnl|Hg17|chr11 (125640279-125640064) | |
| 734-949, gnl|Mm7|chr9 (35109618-35109833) | |
| 1113-1214, gnl|bosTau2|chr29 (21573285-21573386) | |
| 1113-1214, gnl|Hg17|chr11 (125639395-125639294) | |
| 1113-1214, gnl|Mm7|chr9 (35110516-35110617) | |
| 1570-2271, gnl|bosTau2|chr29 (21573543-21574263) | |
| 1570-2271, gnl|Hg17|chr11 (125639127-125638038) | |
| 1570-2271, gnl|Mm7|chr9 (35110762-35111817) |
| Expressed library(ies): 25 entry(ies) | More info |
| Expressed library(ies): 25 entry(ies) | Help | Less info |
| cty (0.832639) | |
| pla (0.401016) | |
| cov (0.396458) | |
| nep (0.36785) | |
| cly (0.361925) | |
| csp (0.322373) | |
| eru (0.240096) | |
| ebs (0.236602) | |
| med (0.232504) | |
| mas (0.210305) | |
| fli (0.202881) | |
| jej (0.197844) | |
| nlu (0.191681) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| eli (0.151814) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| nca (0.136874) | |
| nmm (0.132802) | |
| ese (0.126502) | |
| jca (0.11396) |
| Expressed library(ies): 25 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cty (0.832639) | |
| pla (0.401016) | |
| cov (0.396458) | |
| nep (0.36785) | |
| cly (0.361925) | |
| csp (0.322373) | |
| eru (0.240096) | |
| ebs (0.236602) | |
| med (0.232504) | |
| mas (0.210305) | |
| fli (0.202881) | |
| jej (0.197844) | |
| nlu (0.191681) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| eli (0.151814) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| nca (0.136874) | |
| nmm (0.132802) | |
| ese (0.126502) | |
| jca (0.11396) |