Non-Coding RNA Search

Ss1.1-Pig4-TMW8037I15.5

Sequence:


               
               TAAATATAAAATAAAATAAAATAATTAAAATAGCTGAACCTACTGTCTTCTAAAGAAATT
TCTCTGTTCTTAATTCGGTACTGCACCCTGCTGGTGTCCAATACTGTACCAAATCTTACC
TGATTTTTTTTGTCTGATATCTTCCATTAAAGTTATTATTTTAGCAGAAAAAATCTGGCA
ACAAGTATCTTTTGCAACCTAGAGTACTCTCTTGACAGTCTGTACGCCATGAAAACTTGT
ATATTTAGGCAGTTGACTAGGAAATTAATCATCACTGAATTTACATTACTAAATAAACGC
ATAGTGCTTGACCAGATTTGTAACACTATTGTTTCTAATATGAACGATGGAAACACACTC
CCCAAATTGCCTTAACACAAAAGCTCTAAATTACAGTATATCAAATGATATGTTTAACTT
TAATCCTTTAATTGTTAATGGGAAGTTAATTTGTGGTACTACACAAATGTTTTATGTAGT
AAAAAAAAAATATATATTATGGGTTTATGTAAAAATATTCCCTGAATACCTACACATTGA
CCAACCCAAAAAGGTAGTAAACATTTAAGAATATTAATGAAGCTTTGACCTCCCCATTGC
ATATTTTTAAAAAATATTTCTTTCTGTAAAGTATCAATGAATGAAAATTAATTATAACTA
CCATGATTTGGAGCCCACCAATTCAGATTTATAGTTGTCTGAGAGCTACCACTTTCATTG
TGAAAGGTGTATATTAATGTGCACATAATATTCCTATATGAAAACTTCAAATACAAACAA
ATGTCTATCTAAGCTATTTTTATCTTTTTACATAGGCATTCTACATGAAAATATTTGAGT
TGGTAGTATAATTAGTAAGATCAAAATATAGTCTTAAAATTATATTTAAACTTTCTGAAA
ACTATAATAATTTACCATAAAATCACTTTGAATAATATGTTTTCATTTTCTGTATGTTTT
TCAAGTTCAAATTTTGTAGGAACAATGCATATTACCCTTTTGCTAGGTTTTCCTTTTTCA
AGGTTCCTCTTGAATGTAAATCTCAGATTATTTCCTACAGTTTAAAGCATTTAAACTTAA
TATGTTACTTATAATGTGTTAAACTACTTATCCACCATAGGTATATTACTAATACCATAA
AAGATTAATTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAAATATAAAATAAAATAAAATAATTAAAATAGCTGAACCTACTGTCTTCTAAAGAAATT
TCTCTGTTCTTAATTCGGTACTGCACCCTGCTGGTGTCCAATACTGTACCAAATCTTACC
TGATTTTTTTTGTCTGATATCTTCCATTAAAGTTATTATTTTAGCAGAAAAAATCTGGCA
ACAAGTATCTTTTGCAACCTAGAGTACTCTCTTGACAGTCTGTACGCCATGAAAACTTGT
ATATTTAGGCAGTTGACTAGGAAATTAATCATCACTGAATTTACATTACTAAATAAACGC
ATAGTGCTTGACCAGATTTGTAACACTATTGTTTCTAATATGAACGATGGAAACACACTC
CCCAAATTGCCTTAACACAAAAGCTCTAAATTACAGTATATCAAATGATATGTTTAACTT
TAATCCTTTAATTGTTAATGGGAAGTTAATTTGTGGTACTACACAAATGTTTTATGTAGT
AAAAAAAAAATATATATTATGGGTTTATGTAAAAATATTCCCTGAATACCTACACATTGA
CCAACCCAAAAAGGTAGTAAACATTTAAGAATATTAATGAAGCTTTGACCTCCCCATTGC
ATATTTTTAAAAAATATTTCTTTCTGTAAAGTATCAATGAATGAAAATTAATTATAACTA
CCATGATTTGGAGCCCACCAATTCAGATTTATAGTTGTCTGAGAGCTACCACTTTCATTG
TGAAAGGTGTATATTAATGTGCACATAATATTCCTATATGAAAACTTCAAATACAAACAA
ATGTCTATCTAAGCTATTTTTATCTTTTTACATAGGCATTCTACATGAAAATATTTGAGT
TGGTAGTATAATTAGTAAGATCAAAATATAGTCTTAAAATTATATTTAAACTTTCTGAAA
ACTATAATAATTTACCATAAAATCACTTTGAATAATATGTTTTCATTTTCTGTATGTTTT
TCAAGTTCAAATTTTGTAGGAACAATGCATATTACCCTTTTGCTAGGTTTTCCTTTTTCA
AGGTTCCTCTTGAATGTAAATCTCAGATTATTTCCTACAGTTTAAAGCATTTAAACTTAA
TATGTTACTTATAATGTGTTAAACTACTTATCCACCATAGGTATATTACTAATACCATAA
AAGATTAATTCT

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

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               13-765, gnl|bosTau2|chr9 (59526753-59526002)
               

               
               13-765, gnl|Hg17|chr3 (133879645-133880951)
               


               
               813-1148, gnl|bosTau2|chr9 (59525899-59525542)
               

               
               813-1148, gnl|Hg17|chr3 (133881001-133881306)
               

               
               813-1148, gnl|Mm7|chr9 (103760732-103760401)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               13-765, gnl|bosTau2|chr9 (59526753-59526002)
               

               
               13-765, gnl|Hg17|chr3 (133879645-133880951)
               


               
               813-1148, gnl|bosTau2|chr9 (59525899-59525542)
               

               
               813-1148, gnl|Hg17|chr3 (133881001-133881306)
               

               
               813-1148, gnl|Mm7|chr9 (103760732-103760401)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

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               fco (0.314416)
               

               
               lun (0.150489)
               

               
               kid (0.129735)
               

               
               cty (0.10408)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.314416)
               

               
               lun (0.150489)
               

               
               kid (0.129735)
               

               
               cty (0.10408)

	13-765, gnl\|bosTau2\|chr9 (59526753-59526002)
	13-765, gnl\|Hg17\|chr3 (133879645-133880951)

	813-1148, gnl\|bosTau2\|chr9 (59525899-59525542)
	813-1148, gnl\|Hg17\|chr3 (133881001-133881306)
	813-1148, gnl\|Mm7\|chr9 (103760732-103760401)