Non-Coding RNA Search

Ss1.1-Pig4-TMW8037I22.3

Sequence:


               
               GCGGCCCAGAGGGAGGCGGCAGTTGGTCCCTGTACAGTTTTATTGTACCGAGAGACTCTC
CCTGTATTATACGCCTTTAAATGGAGTCAACTTTTTAATTATATATATAAAGATAAAGAT
ATATAAATATATATAAATATAAACTTTTTAAAACTGTGAAAAAATAGCTATGAAATTATA
AAAAAAAAAGCGAACACATTCTGACGTGCAGAATATTATTTTTTATTTCCTGTTAGATCG
TGCGTGTCTAGCACCCAGCTTCACGGGCCCCCCCCCTTGTCCCGAGCACACCCCCCCCCC
GCCCGCCCCCCGGCCCAGGTGTACTGTACGCGCCCCCAGGACGGAGAAGGACTTGGGAGA
AGGGAGGCTGAGGGAGGGAGGGGAGCCGGCCGAGCTCGGCGCCCTGCTCAGCCCACGAAA
GCACTTAGCAGCCCCCGCACCTTCCAGGGCGACGGGAGGCCTCGTCCAGACAATCTCAAG
GGAAGGAAAAGCCAGACTTTGGTTTCGTTTTTTGGGGGAATTATTGTTTTCCTTTTTTTC
TTTTTTAAAGTTTCTTTTGGAATTTTGTTTGTTGGCGAATTCTGTGTGATCTTTTTCATA
AAAAAAGGAAAAAGAAAAGAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGCCCAGAGGGAGGCGGCAGTTGGTCCCTGTACAGTTTTATTGTACCGAGAGACTCTC
CCTGTATTATACGCCTTTAAATGGAGTCAACTTTTTAATTATATATATAAAGATAAAGAT
ATATAAATATATATAAATATAAACTTTTTAAAACTGTGAAAAAATAGCTATGAAATTATA
AAAAAAAAAGCGAACACATTCTGACGTGCAGAATATTATTTTTTATTTCCTGTTAGATCG
TGCGTGTCTAGCACCCAGCTTCACGGGCCCCCCCCCTTGTCCCGAGCACACCCCCCCCCC
GCCCGCCCCCCGGCCCAGGTGTACTGTACGCGCCCCCAGGACGGAGAAGGACTTGGGAGA
AGGGAGGCTGAGGGAGGGAGGGGAGCCGGCCGAGCTCGGCGCCCTGCTCAGCCCACGAAA
GCACTTAGCAGCCCCCGCACCTTCCAGGGCGACGGGAGGCCTCGTCCAGACAATCTCAAG
GGAAGGAAAAGCCAGACTTTGGTTTCGTTTTTTGGGGGAATTATTGTTTTCCTTTTTTTC
TTTTTTAAAGTTTCTTTTGGAATTTTGTTTGTTGGCGAATTCTGTGTGATCTTTTTCATA
AAAAAAGGAAAAAGAAAAGAAAAA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               401-624, gnl|bosTau2|chr25 (37253224-37253442)
               

               
               401-624, gnl|Hg17|chr7 (5119902-5119683)
               

               
               401-624, gnl|Mm7|chr5 (141705989-141705729)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               401-624, gnl|bosTau2|chr25 (37253224-37253442)
               

               
               401-624, gnl|Hg17|chr7 (5119902-5119683)
               

               
               401-624, gnl|Mm7|chr5 (141705989-141705729)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               che (0.136314)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               ecc (0.115035)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               che (0.136314)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               ecc (0.115035)

	401-624, gnl\|bosTau2\|chr25 (37253224-37253442)
	401-624, gnl\|Hg17\|chr7 (5119902-5119683)
	401-624, gnl\|Mm7\|chr5 (141705989-141705729)