Non-Coding RNA Search

Ss1.1-Pig4-TMW8037I24.3

Sequence:


               
               AAAGACTGAACCGGCCACAGGCTTCATTGATGGAGACTTGATTGAGAGTTTCCTGGATAT
CAGCCGACCCAAGATGCAGGAGGTTGTGGCCAACCTACAGTACGACGATGGCAGCGGAAT
GAAGCGAGAGGCCACCGCAGATGACCTGATCAAGGTCGTGGAGGAGTTGACTCGGATCCA
TTAGCCCCGGGCAGGGCTCCCCTTTCCCAGACCCTCTCTGACGGCTTTGCCCTCCTGCTC
TCCTCCTCCTCCCCCGCCATTGTCTTCTTGGCCGCGGGAAACCTTTCCCTGAGCCAGCTG
CCCGCAAGCCACAGCCTACCTGTGTGGAAACGGGGATTTTGTAGAACTAAAACCAGTTCA
CTGGAGACCTGGGAAAGGGCTGAAGGTGAAATATTTTCTCCCTGGATTTTTACCAGTCTC
ACATGATTCCAGCCATCACCTGGGGCCACCAAGCCTTGATTGGTGTAGCCCCGGCTGTCC
TCCTTCTGGGGGCACTCTTGCAGCTCTTTGGCTGAAAGGAAGCTCTGTGTGTGTGTCTCC
CACACTCGTGCATTGTCCTCTACTATCTTTTTATTTAGGATGGGGCTGTGGGGAGGTTGT
GGGAGGGGGGGAAGGGGAGGGGCCCGTTGTCTTTGAAGTGAGAGCTTCCTGTGCTTTCTT
CTGCTGCCTCTGAGAGCTCTGGGGCTGGAGGCCTGACCACCAGGCCGTGGGCTTCCCGAG
TGTAAAACCTGCGATGGTGGATGATCACCAAGCCACAGCCTTTCTGTCTCTGGGGAGCTG
CCTTCTTCAGAGGGAAGGAGGTGGGGGGACGTGAATTGGTGGTTAGTTTCTGAGTTTTAC
CAAATAAAGTAGAGTCTAAGACGAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAGACTGAACCGGCCACAGGCTTCATTGATGGAGACTTGATTGAGAGTTTCCTGGATAT
CAGCCGACCCAAGATGCAGGAGGTTGTGGCCAACCTACAGTACGACGATGGCAGCGGAAT
GAAGCGAGAGGCCACCGCAGATGACCTGATCAAGGTCGTGGAGGAGTTGACTCGGATCCA
TTAGCCCCGGGCAGGGCTCCCCTTTCCCAGACCCTCTCTGACGGCTTTGCCCTCCTGCTC
TCCTCCTCCTCCCCCGCCATTGTCTTCTTGGCCGCGGGAAACCTTTCCCTGAGCCAGCTG
CCCGCAAGCCACAGCCTACCTGTGTGGAAACGGGGATTTTGTAGAACTAAAACCAGTTCA
CTGGAGACCTGGGAAAGGGCTGAAGGTGAAATATTTTCTCCCTGGATTTTTACCAGTCTC
ACATGATTCCAGCCATCACCTGGGGCCACCAAGCCTTGATTGGTGTAGCCCCGGCTGTCC
TCCTTCTGGGGGCACTCTTGCAGCTCTTTGGCTGAAAGGAAGCTCTGTGTGTGTGTCTCC
CACACTCGTGCATTGTCCTCTACTATCTTTTTATTTAGGATGGGGCTGTGGGGAGGTTGT
GGGAGGGGGGGAAGGGGAGGGGCCCGTTGTCTTTGAAGTGAGAGCTTCCTGTGCTTTCTT
CTGCTGCCTCTGAGAGCTCTGGGGCTGGAGGCCTGACCACCAGGCCGTGGGCTTCCCGAG
TGTAAAACCTGCGATGGTGGATGATCACCAAGCCACAGCCTTTCTGTCTCTGGGGAGCTG
CCTTCTTCAGAGGGAAGGAGGTGGGGGGACGTGAATTGGTGGTTAGTTTCTGAGTTTTAC
CAAATAAAGTAGAGTCTAAGACGAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|12805469|gb|AAH02210.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|12805469|gb|AAH02210.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               137-296, - strand, RNAz p=0.998579
               

               
               584-866, + strand, RNAz p=0.996904

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               137-296, - strand, RNAz p=0.998579
               

               
               584-866, + strand, RNAz p=0.996904

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_001923, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_001923, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               98-866, gnl|bosTau2|chr29 (30873972-30873201)
               

               
               98-866, gnl|Hg17|chr11 (60824270-60823499)
               

               
               98-866, gnl|Mm7|chr19 (10309201-10309947)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               98-866, gnl|bosTau2|chr29 (30873972-30873201)
               

               
               98-866, gnl|Hg17|chr11 (60824270-60823499)
               

               
               98-866, gnl|Mm7|chr19 (10309201-10309947)

Expressed library(ies): 14 entry(ies)

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Expressed library(ies): 14 entry(ies)

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               fcc (0.39557)
               

               
               nbm (0.297974)
               

               
               fce (0.271592)
               

               
               ece (0.229305)
               

               
               jca (0.22792)
               

               
               fbs (0.175346)
               

               
               nco (0.161734)
               

               
               cag (0.151194)
               

               
               cov (0.132153)
               

               
               cly (0.120642)
               

               
               clu (0.119646)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.39557)
               

               
               nbm (0.297974)
               

               
               fce (0.271592)
               

               
               ece (0.229305)
               

               
               jca (0.22792)
               

               
               fbs (0.175346)
               

               
               nco (0.161734)
               

               
               cag (0.151194)
               

               
               cov (0.132153)
               

               
               cly (0.120642)
               

               
               clu (0.119646)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

	137-296, - strand, RNAz p=0.998579
	584-866, + strand, RNAz p=0.996904

	98-866, gnl\|bosTau2\|chr29 (30873972-30873201)
	98-866, gnl\|Hg17\|chr11 (60824270-60823499)
	98-866, gnl\|Mm7\|chr19 (10309201-10309947)

	fcc (0.39557)
	nbm (0.297974)
	fce (0.271592)
	ece (0.229305)
	jca (0.22792)
	fbs (0.175346)
	nco (0.161734)
	cag (0.151194)
	cov (0.132153)
	cly (0.120642)
	clu (0.119646)
	ecc (0.115035)
	cty (0.10408)
	jej (0.0989218)