Non-Coding RNA Search

Ss1.1-Pig4-TMW8037J01.3

Sequence:


               
               GTGACAAGCAACCCGCCTCTGCCCCAACCACCACAGACCACCAGCCGCACCCCAACTACC
CCGCCCAGAAGTACCACTCCCGGAGTAGCAAGTCCAGTTGCTGGAGCGGCAGCGATGAGA
AACGAGGGTCGGCCCGTTCCGAGCACAACGCCGGTCCCAGTGCCAAGAGCCTCATCCCGA
AGGAGTCTCGGCTGGATGCCTTCTGGGACTAGGGACACAAGCCATCCTCCCCTGGAAGGG
GGGAAAAAACCAACAACAGACACCAGGAAAACAGGAAACAGCCAAGAAATGTGAGACAGG
GGACTAGCCACCTTGGGACAGAGGGCGCCAACCATTCAGACTTGGCCCTCGTGGCTCACA
CTACGACACGTCCAGCATTAGCCTTGACTGAGGGCTGCTCCACCCACGGGAAACCTCTGC
TTTCGATGTAAATAATGTACACTTTGTGGATGTCATCGAGCCTAGAGTACCTTCCCCTTT
TTATATTTGTATTGACTTTAACTTATAAAAAAAAGAGAGAGAGAGAAGAAAACAATTTAA
AAAAAACTACCAACAACAAAAAGAATGTTTGATGTTGGAGAAGGGACGGCCAGCCAGCCC
GCCTGTCGTGGTGGTGTGGAGCGGGCACAGGGACAGCTGTGGCACACAGGTCCTCGCCCC
GGGTCGCCTGGGGGCAGGGGCGGGTGGGGGACTAAGCTGTTTCCATCGGATGTCTGTACA
CAGCACGTGGGGATCAGGCTTTTCCCGCCCTGATTTGCGGGGACATCCCCTCCGGCCATT
GGCCCCTTTCAAATGCTACGTGATTATGTTATAAAACGCACGCTCTCTGGCCCAGAAAGA
CCCGTGGAAGAGCTCGTTTATTTTGTGTGATTTTCATGATGACGCGACTCCTACAAAAGG
GAAAAAAAAACAACAACCCCATGTCCTTGTTTACAGAAGATCAACTCCAAACAGGCCCCC
GCTCAGCTCAGTTGCAGAAGGAAGAACAGAGAAAAAGCCTTTGGGTCGGACGCTCGGAAG
CAAAGAGAAACTCTTTGCTCTGCCTTGGGGGTCCTTTCGAGACCCTCCGCCCCGCTTGGG
CAGAGACGGCCGTGCTTCTGGGGAGCAAGGCCTCAAAGGCAGGGCGCACGCAGAGGACGT
TGGAGGCTGGGAGGAAGCATGTCTGTGTTATTTATACGATGGAATTTTACGTTTTTCCGT
GAGCATGAAGCCGAGGCAGTGTGAGGGGAGCAGGCCGCCGCCGTGCTGTCTGTTACACTA
CGTGCTGTTAGTACCATTTTGTATGTTGTGTAAAACAAGAAGCATTGAACAAAGCAAAAA
GGTGATGTATGTATATGAGAAAAATTAATTGTACGATATCATTCCAGTACATTCCGTTGT
ACATTTTAGTCTCGTTTACTTTCTCTTCATTGTTGATAAGAGGATGCGAACTGTACAGTT
TCCAGCTAGTTACCCATATTAGAGAAGAAATCAAGAGTCTTAGAAGACGACAGGAGAGGA
GGAACGTGTGTGAATCGCAGTTGTCAAAAAAAAAAAAAAATAGCCTAGCTGGCCTTATTT
GTGAAGCATAATTGCTTTTAGCATATGGAAGTATTTTTTCACATTTTCTTTGTATAAAAT
TTGTATTAAACTTAAATATCTTTTTTGATGACGGTGTTTCTTTGTGACTGAGCCCGTGGA
CTCACACAGTCTATACACGCTTTTGGGTTTCCCCACCGCCCTCCCCCCTCAATTTTTTCA
GGTTCTTCACCTTTTTTTAATTAAACTGTTTTGGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGACAAGCAACCCGCCTCTGCCCCAACCACCACAGACCACCAGCCGCACCCCAACTACC
CCGCCCAGAAGTACCACTCCCGGAGTAGCAAGTCCAGTTGCTGGAGCGGCAGCGATGAGA
AACGAGGGTCGGCCCGTTCCGAGCACAACGCCGGTCCCAGTGCCAAGAGCCTCATCCCGA
AGGAGTCTCGGCTGGATGCCTTCTGGGACTAGGGACACAAGCCATCCTCCCCTGGAAGGG
GGGAAAAAACCAACAACAGACACCAGGAAAACAGGAAACAGCCAAGAAATGTGAGACAGG
GGACTAGCCACCTTGGGACAGAGGGCGCCAACCATTCAGACTTGGCCCTCGTGGCTCACA
CTACGACACGTCCAGCATTAGCCTTGACTGAGGGCTGCTCCACCCACGGGAAACCTCTGC
TTTCGATGTAAATAATGTACACTTTGTGGATGTCATCGAGCCTAGAGTACCTTCCCCTTT
TTATATTTGTATTGACTTTAACTTATAAAAAAAAGAGAGAGAGAGAAGAAAACAATTTAA
AAAAAACTACCAACAACAAAAAGAATGTTTGATGTTGGAGAAGGGACGGCCAGCCAGCCC
GCCTGTCGTGGTGGTGTGGAGCGGGCACAGGGACAGCTGTGGCACACAGGTCCTCGCCCC
GGGTCGCCTGGGGGCAGGGGCGGGTGGGGGACTAAGCTGTTTCCATCGGATGTCTGTACA
CAGCACGTGGGGATCAGGCTTTTCCCGCCCTGATTTGCGGGGACATCCCCTCCGGCCATT
GGCCCCTTTCAAATGCTACGTGATTATGTTATAAAACGCACGCTCTCTGGCCCAGAAAGA
CCCGTGGAAGAGCTCGTTTATTTTGTGTGATTTTCATGATGACGCGACTCCTACAAAAGG
GAAAAAAAAACAACAACCCCATGTCCTTGTTTACAGAAGATCAACTCCAAACAGGCCCCC
GCTCAGCTCAGTTGCAGAAGGAAGAACAGAGAAAAAGCCTTTGGGTCGGACGCTCGGAAG
CAAAGAGAAACTCTTTGCTCTGCCTTGGGGGTCCTTTCGAGACCCTCCGCCCCGCTTGGG
CAGAGACGGCCGTGCTTCTGGGGAGCAAGGCCTCAAAGGCAGGGCGCACGCAGAGGACGT
TGGAGGCTGGGAGGAAGCATGTCTGTGTTATTTATACGATGGAATTTTACGTTTTTCCGT
GAGCATGAAGCCGAGGCAGTGTGAGGGGAGCAGGCCGCCGCCGTGCTGTCTGTTACACTA
CGTGCTGTTAGTACCATTTTGTATGTTGTGTAAAACAAGAAGCATTGAACAAAGCAAAAA
GGTGATGTATGTATATGAGAAAAATTAATTGTACGATATCATTCCAGTACATTCCGTTGT
ACATTTTAGTCTCGTTTACTTTCTCTTCATTGTTGATAAGAGGATGCGAACTGTACAGTT
TCCAGCTAGTTACCCATATTAGAGAAGAAATCAAGAGTCTTAGAAGACGACAGGAGAGGA
GGAACGTGTGTGAATCGCAGTTGTCAAAAAAAAAAAAAAATAGCCTAGCTGGCCTTATTT
GTGAAGCATAATTGCTTTTAGCATATGGAAGTATTTTTTCACATTTTCTTTGTATAAAAT
TTGTATTAAACTTAAATATCTTTTTTGATGACGGTGTTTCTTTGTGACTGAGCCCGTGGA
CTCACACAGTCTATACACGCTTTTGGGTTTCCCCACCGCCCTCCCCCCTCAATTTTTTCA
GGTTCTTCACCTTTTTTTAATTAAACTGTTTTGGAA

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               56-655, gnl|bosTau2|chr25 (2060026-2060646)
               

               
               56-655, gnl|Hg17|chr20 (45272962-45272343)
               

               
               56-655, gnl|Mm7|chr2 (165526405-165525799)
               


               
               695-1776, gnl|bosTau2|chr25 (2060665-2061763)
               

               
               695-1776, gnl|Hg17|chr20 (45272317-45271272)
               

               
               695-1776, gnl|Mm7|chr2 (165525780-165524680)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               56-655, gnl|bosTau2|chr25 (2060026-2060646)
               

               
               56-655, gnl|Hg17|chr20 (45272962-45272343)
               

               
               56-655, gnl|Mm7|chr2 (165526405-165525799)
               


               
               695-1776, gnl|bosTau2|chr25 (2060665-2061763)
               

               
               695-1776, gnl|Hg17|chr20 (45272317-45271272)
               

               
               695-1776, gnl|Mm7|chr2 (165525780-165524680)

Expressed library(ies): 16 entry(ies)

More info

Expressed library(ies): 16 entry(ies)

Help | Less info


               
               pro (0.512033)
               

               
               cmu (0.372787)
               

               
               cte (0.29274)
               

               
               csk (0.281492)
               

               
               fcc (0.197785)
               

               
               sto (0.179824)
               

               
               fbs (0.175346)
               

               
               lun (0.150489)
               

               
               ski (0.146735)
               

               
               spl (0.143184)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               thg (0.126791)
               

               
               pgl (0.118483)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)
               

               
               cmu (0.372787)
               

               
               cte (0.29274)
               

               
               csk (0.281492)
               

               
               fcc (0.197785)
               

               
               sto (0.179824)
               

               
               fbs (0.175346)
               

               
               lun (0.150489)
               

               
               ski (0.146735)
               

               
               spl (0.143184)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               thg (0.126791)
               

               
               pgl (0.118483)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

	56-655, gnl\|bosTau2\|chr25 (2060026-2060646)
	56-655, gnl\|Hg17\|chr20 (45272962-45272343)
	56-655, gnl\|Mm7\|chr2 (165526405-165525799)

	695-1776, gnl\|bosTau2\|chr25 (2060665-2061763)
	695-1776, gnl\|Hg17\|chr20 (45272317-45271272)
	695-1776, gnl\|Mm7\|chr2 (165525780-165524680)

	pro (0.512033)
	cmu (0.372787)
	cte (0.29274)
	csk (0.281492)
	fcc (0.197785)
	sto (0.179824)
	fbs (0.175346)
	lun (0.150489)
	ski (0.146735)
	spl (0.143184)
	cst (0.140036)
	hlv (0.139256)
	thg (0.126791)
	pgl (0.118483)
	cty (0.10408)
	ldo (0.0970026)