Non-Coding RNA Search

Ss1.1-Pig4-TMW8037J06.3

Sequence:


               
               CGAGAGCAGCAGGAGCTCAAGAAACGGGACCAAGAAACCGTGGCACTTGAAGCTGAATTC
CAATATGCTGAAACTGTATTTCGAGATAAGTCTGGTCGTAAGAGGAATTTGAAACTGGAA
CGTTTAGAGCAGCGGAGAAAAGCAGAGAAGGACTCGGAGAGAGACGAGCTGTATGCTCAG
TGGGGGAAAGGGCTTGCCCAGAGCCGACAGCAGCAACAAAATGTGGAGGATGCAATGAAA
GAAATGCAAAAGCCTCTGGCGCGCTATATTGATGATGAAGATCTGGATCGGATGTTGAGA
GAACAAGAAAGAGAGGGAGACCCCATGGCCAACTTTATCAAGAAGAATAAGGCCAAGGAG
AACAAGACTAAGAAAGTGAGACCTCGCTATAATGGCCCAGCACCTCCTCCCAACAGATTC
AATATCTGGCCTGGATATCGCTGGGATGGAGTGGACAGATCCAATGGATTTGAACAGAAG
CGCTTTGCCAGGCTTGCCAGCAAGAAGGCTGTGGAGGAACTTGCCTACAAGTGGAGTGTT
GAGGATATGTAACTTTTCTGAGGCTGTGGACTTGGTGGTGGATTGTGGTAGTGGACATAG
GGCAGCCATACATCCGGCTGTAACAGTCATCTGTGCTAATAATCAGGGCCCACACAGACC
AGCAGCTTACTGAATGCCAGTTTTGATGACAGAAGAATATTTGAGATGTGCTGTTTGGAC
TGAAGTACCTATACTTTTCAGGTGTGCCAACACTGCCTGTTGCTGGCTTTCAGAGGAAGT
GTTGATTTCTCTGTCCCAGGGTTTGTTCTTGGTTAGAGTTTTTCTTTTTTAATAAACATA
CATTTATTTCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGAGAGCAGCAGGAGCTCAAGAAACGGGACCAAGAAACCGTGGCACTTGAAGCTGAATTC
CAATATGCTGAAACTGTATTTCGAGATAAGTCTGGTCGTAAGAGGAATTTGAAACTGGAA
CGTTTAGAGCAGCGGAGAAAAGCAGAGAAGGACTCGGAGAGAGACGAGCTGTATGCTCAG
TGGGGGAAAGGGCTTGCCCAGAGCCGACAGCAGCAACAAAATGTGGAGGATGCAATGAAA
GAAATGCAAAAGCCTCTGGCGCGCTATATTGATGATGAAGATCTGGATCGGATGTTGAGA
GAACAAGAAAGAGAGGGAGACCCCATGGCCAACTTTATCAAGAAGAATAAGGCCAAGGAG
AACAAGACTAAGAAAGTGAGACCTCGCTATAATGGCCCAGCACCTCCTCCCAACAGATTC
AATATCTGGCCTGGATATCGCTGGGATGGAGTGGACAGATCCAATGGATTTGAACAGAAG
CGCTTTGCCAGGCTTGCCAGCAAGAAGGCTGTGGAGGAACTTGCCTACAAGTGGAGTGTT
GAGGATATGTAACTTTTCTGAGGCTGTGGACTTGGTGGTGGATTGTGGTAGTGGACATAG
GGCAGCCATACATCCGGCTGTAACAGTCATCTGTGCTAATAATCAGGGCCCACACAGACC
AGCAGCTTACTGAATGCCAGTTTTGATGACAGAAGAATATTTGAGATGTGCTGTTTGGAC
TGAAGTACCTATACTTTTCAGGTGTGCCAACACTGCCTGTTGCTGGCTTTCAGAGGAAGT
GTTGATTTCTCTGTCCCAGGGTTTGTTCTTGGTTAGAGTTTTTCTTTTTTAATAAACATA
CATTTATTTCTC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|50799747|ref|XP_428429.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|50799747|ref|XP_428429.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               191-385, gnl|bosTau2|chr15 (13293344-13293539)
               

               
               191-385, gnl|Hg17|chr11 (116133877-116133682)
               

               
               191-385, gnl|Mm7|chr9 (46250197-46250391)
               


               
               456-849, gnl|bosTau2|chr15 (13305057-13305455)
               

               
               456-849, gnl|Hg17|chr11 (116124504-116124107)
               

               
               456-849, gnl|Mm7|chr9 (46256616-46256979)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               191-385, gnl|bosTau2|chr15 (13293344-13293539)
               

               
               191-385, gnl|Hg17|chr11 (116133877-116133682)
               

               
               191-385, gnl|Mm7|chr9 (46250197-46250391)
               


               
               456-849, gnl|bosTau2|chr15 (13305057-13305455)
               

               
               456-849, gnl|Hg17|chr11 (116124504-116124107)
               

               
               456-849, gnl|Mm7|chr9 (46256616-46256979)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               tes (0.415628)
               

               
               cte (0.29274)
               

               
               fty (0.17584)
               

               
               sin (0.174948)
               

               
               cje (0.165235)
               

               
               cst (0.140036)
               

               
               ste (0.135208)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.415628)
               

               
               cte (0.29274)
               

               
               fty (0.17584)
               

               
               sin (0.174948)
               

               
               cje (0.165235)
               

               
               cst (0.140036)
               

               
               ste (0.135208)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)

	191-385, gnl\|bosTau2\|chr15 (13293344-13293539)
	191-385, gnl\|Hg17\|chr11 (116133877-116133682)
	191-385, gnl\|Mm7\|chr9 (46250197-46250391)

	456-849, gnl\|bosTau2\|chr15 (13305057-13305455)
	456-849, gnl\|Hg17\|chr11 (116124504-116124107)
	456-849, gnl\|Mm7\|chr9 (46256616-46256979)

	tes (0.415628)
	cte (0.29274)
	fty (0.17584)
	sin (0.174948)
	cje (0.165235)
	cst (0.140036)
	ste (0.135208)
	bla (0.124347)
	pgl (0.118483)
	jca (0.11396)
	nbm (0.0993246)